Wall clock time and date at job start Tue Mar 31 2020 15:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31302 * 1 3 3 Si 1.86793 * 120.00243 * 2 1 4 4 H 1.48499 * 109.47499 * 240.00070 * 3 2 1 5 5 H 1.48504 * 109.47078 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47016 * 120.00064 * 3 2 1 7 7 C 1.38988 * 119.99729 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00048 * 180.02562 * 7 2 1 9 9 N 1.37323 * 119.99669 * 0.27332 * 7 2 1 10 10 C 1.36495 * 126.06352 * 179.72547 * 9 7 2 11 11 C 1.35680 * 107.50672 * 179.97438 * 10 9 7 12 12 N 1.40591 * 126.08549 * 179.97438 * 11 10 9 13 13 C 1.34774 * 120.00586 * 180.02562 * 12 11 10 14 14 O 1.21305 * 119.99402 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.00447 * 180.02562 * 13 12 11 16 16 N 1.46900 * 109.47187 * 185.59430 * 15 13 12 17 17 C 1.47061 * 111.00186 * 210.87820 * 16 15 13 18 18 S 1.79694 * 111.72766 * 184.44056 * 17 16 15 19 19 C 1.82755 * 102.39421 * 93.60531 * 18 17 16 20 20 C 1.43982 * 113.17155 * 282.31587 * 19 18 17 21 21 S 1.82761 * 113.16719 * 66.54284 * 20 19 18 22 22 C 1.47066 * 110.99995 * 75.85386 * 16 15 13 23 23 C 1.40653 * 107.83703 * 0.02562 * 11 10 9 24 24 N 1.30906 * 108.38609 * 359.74858 * 23 11 10 25 25 H 0.96998 * 119.99376 * 359.97438 * 1 2 3 26 26 H 1.07994 * 126.24826 * 359.94561 * 10 9 7 27 27 H 0.97004 * 119.99641 * 0.02562 * 12 11 10 28 28 H 1.08994 * 109.46986 * 305.59913 * 15 13 12 29 29 H 1.08998 * 109.47022 * 65.59657 * 15 13 12 30 30 H 1.09006 * 109.02838 * 305.02018 * 17 16 15 31 31 H 1.08999 * 109.02926 * 63.85774 * 17 16 15 32 32 H 1.08998 * 108.74176 * 161.36069 * 19 18 17 33 33 H 1.08999 * 108.64874 * 43.20235 * 19 18 17 34 34 H 1.09006 * 108.74635 * 305.59207 * 20 19 18 35 35 H 1.08998 * 108.74878 * 187.49905 * 20 19 18 36 36 H 1.08999 * 109.03158 * 206.77584 * 22 16 15 37 37 H 1.09003 * 109.02715 * 325.61848 * 22 16 15 38 38 H 1.07995 * 125.80579 * 179.97438 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2471 1.6176 0.0000 4 1 3.1008 1.6964 -1.2125 5 1 1.2821 2.7464 0.0006 6 1 3.1008 1.6962 1.2125 7 6 2.0079 -1.2037 -0.0005 8 1 3.0878 -1.2038 -0.0001 9 7 1.3212 -2.3929 -0.0067 10 6 1.8748 -3.6405 -0.0133 11 6 0.8577 -4.5384 -0.0174 12 7 0.9888 -5.9382 -0.0250 13 6 -0.1103 -6.7181 -0.0289 14 8 -1.2129 -6.2122 -0.0254 15 6 0.0303 -8.2185 -0.0365 16 7 -1.2964 -8.8339 -0.1746 17 6 -1.3479 -10.1345 0.5099 18 16 -2.9203 -10.9633 0.2460 19 6 -2.5679 -12.0214 -1.2018 20 6 -2.5650 -11.2966 -2.4459 21 16 -1.1958 -10.0927 -2.5734 22 6 -1.7835 -8.7313 -1.5585 23 6 -0.3514 -3.8198 -0.0138 24 7 -0.0717 -2.5410 -0.0024 25 1 -0.4849 0.8401 0.0004 26 1 2.9299 -3.8708 -0.0153 27 1 1.8705 -6.3426 -0.0274 28 1 0.6597 -8.5201 -0.8736 29 1 0.4869 -8.5453 0.8977 30 1 -0.5448 -10.7672 0.1318 31 1 -1.2029 -9.9794 1.5790 32 1 -3.3234 -12.8053 -1.2549 33 1 -1.5914 -12.4858 -1.0647 34 1 -3.5106 -10.7632 -2.5428 35 1 -2.4822 -12.0094 -3.2664 36 1 -2.8735 -8.7369 -1.5529 37 1 -1.4365 -7.7918 -1.9886 38 1 -1.3420 -4.2499 -0.0161 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900440591.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:03 Heat of formation + Delta-G solvation = 73.717170 kcal Electronic energy + Delta-G solvation = -22845.415610 eV Core-core repulsion = 19364.175318 eV Total energy + Delta-G solvation = -3481.240292 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.077 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.93451 -38.82135 -36.72921 -34.42763 -34.11234 -33.11705 -30.27849 -29.08621 -28.61750 -27.25681 -24.81562 -23.91145 -23.06678 -20.98402 -20.17932 -19.37354 -17.63938 -17.24816 -17.05978 -16.49406 -16.28033 -15.87682 -15.49831 -15.30217 -14.87145 -14.55784 -14.39608 -14.10217 -13.97840 -13.55682 -13.19963 -13.04735 -12.82853 -12.55983 -12.08082 -11.93915 -11.66650 -11.54655 -11.39146 -11.21765 -10.93955 -10.59452 -10.54707 -10.23987 -10.09601 -9.19046 -9.13136 -8.77929 -8.54381 -8.20799 -8.09643 -8.03124 -6.66791 -6.53336 -4.20389 1.15070 1.34071 2.01409 2.16941 2.86415 3.03382 3.06380 3.08549 3.10350 3.70138 3.76973 3.95720 4.29528 4.44483 4.58574 4.68360 4.69606 4.81105 4.86099 4.94665 5.04274 5.15588 5.17583 5.21771 5.25888 5.29986 5.50557 6.25538 6.34923 6.50694 6.61882 6.93506 6.98992 7.16728 7.27618 7.88471 8.22373 8.31886 8.67148 8.91377 9.40603 9.70172 10.42664 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.037156 B = 0.002284 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.400113 B =12256.163339 C =12333.975789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.046 3.954 3 Si 0.934 3.066 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.324 4.324 8 H 0.115 0.885 9 N -0.143 5.143 10 C -0.085 4.085 11 C -0.057 4.057 12 N -0.627 5.627 13 C 0.494 3.506 14 O -0.515 6.515 15 C 0.048 3.952 16 N -0.530 5.530 17 C 0.103 3.897 18 S -0.216 6.216 19 C -0.091 4.091 20 C -0.074 4.074 21 S -0.322 6.322 22 C 0.123 3.877 23 C -0.034 4.034 24 N -0.261 5.261 25 H 0.275 0.725 26 H 0.145 0.855 27 H 0.395 0.605 28 H 0.071 0.929 29 H 0.102 0.898 30 H 0.070 0.930 31 H 0.120 0.880 32 H 0.117 0.883 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.112 0.888 36 H 0.107 0.893 37 H 0.121 0.879 38 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.200 -22.769 -2.169 22.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.192 1.192 7 C -0.456 4.456 8 H 0.133 0.867 9 N 0.089 4.911 10 C -0.236 4.236 11 C -0.163 4.163 12 N -0.271 5.271 13 C 0.278 3.722 14 O -0.390 6.390 15 C -0.086 4.086 16 N -0.257 5.257 17 C -0.135 4.135 18 S 0.012 5.988 19 C -0.241 4.241 20 C -0.223 4.223 21 S -0.099 6.099 22 C -0.115 4.115 23 C -0.209 4.209 24 N -0.092 5.092 25 H 0.086 0.914 26 H 0.162 0.838 27 H 0.228 0.772 28 H 0.089 0.911 29 H 0.121 0.879 30 H 0.088 0.912 31 H 0.138 0.862 32 H 0.135 0.865 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.130 0.870 36 H 0.125 0.875 37 H 0.139 0.861 38 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -2.029 -20.840 -1.903 21.025 hybrid contribution 1.905 -0.774 -0.435 2.102 sum -0.125 -21.615 -2.338 21.741 Atomic orbital electron populations 1.70213 1.06106 1.28046 1.35337 1.25637 0.95703 1.00238 0.95537 0.85905 0.79142 0.79703 0.79440 1.19186 1.20146 1.19182 1.19806 0.91600 0.80598 1.53597 0.86727 1.44533 1.04047 1.03271 1.39247 1.21256 0.96810 0.85435 1.20129 1.17254 0.94239 0.81255 1.23542 1.42502 1.08129 1.04539 1.71937 1.20247 0.84760 0.88168 0.78981 1.90613 1.25613 1.74383 1.48369 1.21886 0.90115 0.93078 1.03494 1.59168 1.26074 1.22612 1.17803 1.23715 0.96603 0.90726 1.02491 1.87130 1.21353 1.51060 1.39264 1.22260 1.06765 1.00319 0.94737 1.22048 0.99858 1.00034 1.00406 1.87249 1.32991 1.21047 1.68607 1.24216 1.03929 0.97684 0.85690 1.24112 0.98044 0.90721 1.08031 1.78252 0.90102 1.15143 1.25681 0.91435 0.83799 0.77223 0.91059 0.87949 0.91176 0.86219 0.86529 0.88939 0.88685 0.86971 0.87531 0.86140 0.80737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.74 11.81 55.50 0.66 -21.08 16 2 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 3 Si 0.93 19.05 29.55 -169.99 -5.02 14.02 16 4 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 7 C -0.32 -8.62 10.25 -14.81 -0.15 -8.77 16 8 H 0.12 2.71 7.83 -52.49 -0.41 2.30 16 9 N -0.14 -3.96 3.74 -11.41 -0.04 -4.00 16 10 C -0.09 -2.01 11.49 -16.39 -0.19 -2.20 16 11 C -0.06 -1.31 6.90 -83.84 -0.58 -1.89 16 12 N -0.63 -10.77 5.47 -10.00 -0.05 -10.83 16 13 C 0.49 8.22 7.22 -10.99 -0.08 8.14 16 14 O -0.51 -10.76 12.92 5.54 0.07 -10.68 16 15 C 0.05 0.55 5.53 -4.98 -0.03 0.52 16 16 N -0.53 -6.27 3.87 -246.68 -0.96 -7.23 16 17 C 0.10 0.96 5.14 60.15 0.31 1.27 16 18 S -0.22 -2.01 21.32 -107.50 -2.29 -4.31 16 19 C -0.09 -0.58 5.62 32.98 0.19 -0.40 16 20 C -0.07 -0.52 5.62 32.98 0.19 -0.34 16 21 S -0.32 -3.29 21.21 -107.50 -2.28 -5.57 16 22 C 0.12 1.48 5.09 60.16 0.31 1.79 16 23 C -0.03 -0.89 10.85 -17.04 -0.18 -1.07 16 24 N -0.26 -7.64 10.40 30.80 0.32 -7.32 16 25 H 0.28 7.12 8.31 -40.82 -0.34 6.78 16 26 H 0.14 2.82 8.06 -52.49 -0.42 2.40 16 27 H 0.40 5.13 8.83 -40.82 -0.36 4.77 16 28 H 0.07 0.73 7.90 -51.93 -0.41 0.32 16 29 H 0.10 0.92 7.76 -51.93 -0.40 0.51 16 30 H 0.07 0.57 7.63 -51.72 -0.39 0.18 16 31 H 0.12 1.04 8.12 -51.73 -0.42 0.62 16 32 H 0.12 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.09 0.56 7.99 -51.93 -0.42 0.15 16 34 H 0.09 0.70 8.00 -51.92 -0.42 0.28 16 35 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.11 1.32 7.65 -51.73 -0.40 0.92 16 37 H 0.12 1.71 6.95 -51.72 -0.36 1.35 16 38 H 0.18 4.61 5.92 -52.49 -0.31 4.29 16 LS Contribution 338.03 15.07 5.09 5.09 Total: -1.00 -34.00 338.03 -9.53 -43.53 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -4.70 Total: 10.23 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -0.32 Total: -1.86 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: -0.08 Total: -50.46 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.07 Total: -10.68 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.02 Total: 14.02 kcal Atomic # 16 Polarization: -5.30 SS G_CDS: -4.57 Total: -9.88 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.00 -9.53 -43.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900440591.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.247 kcal (2) G-P(sol) polarization free energy of solvation -34.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds