Wall clock time and date at job start Tue Mar 31 2020 15:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31302 * 1 3 3 Si 1.86793 * 120.00243 * 2 1 4 4 H 1.48499 * 109.47499 * 240.00070 * 3 2 1 5 5 H 1.48504 * 109.47078 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47016 * 120.00064 * 3 2 1 7 7 C 1.38988 * 119.99729 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00048 * 180.02562 * 7 2 1 9 9 N 1.37323 * 119.99669 * 0.27332 * 7 2 1 10 10 C 1.36495 * 126.06352 * 179.72547 * 9 7 2 11 11 C 1.35680 * 107.50672 * 179.97438 * 10 9 7 12 12 N 1.40591 * 126.08549 * 179.97438 * 11 10 9 13 13 C 1.34774 * 120.00586 * 180.02562 * 12 11 10 14 14 O 1.21305 * 119.99402 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.00447 * 180.02562 * 13 12 11 16 16 N 1.46900 * 109.47187 * 185.59430 * 15 13 12 17 17 C 1.47061 * 111.00186 * 210.87820 * 16 15 13 18 18 S 1.79694 * 111.72766 * 184.44056 * 17 16 15 19 19 C 1.82755 * 102.39421 * 93.60531 * 18 17 16 20 20 C 1.43982 * 113.17155 * 282.31587 * 19 18 17 21 21 S 1.82761 * 113.16719 * 66.54284 * 20 19 18 22 22 C 1.47066 * 110.99995 * 75.85386 * 16 15 13 23 23 C 1.40653 * 107.83703 * 0.02562 * 11 10 9 24 24 N 1.30906 * 108.38609 * 359.74858 * 23 11 10 25 25 H 0.96998 * 119.99376 * 359.97438 * 1 2 3 26 26 H 1.07994 * 126.24826 * 359.94561 * 10 9 7 27 27 H 0.97004 * 119.99641 * 0.02562 * 12 11 10 28 28 H 1.08994 * 109.46986 * 305.59913 * 15 13 12 29 29 H 1.08998 * 109.47022 * 65.59657 * 15 13 12 30 30 H 1.09006 * 109.02838 * 305.02018 * 17 16 15 31 31 H 1.08999 * 109.02926 * 63.85774 * 17 16 15 32 32 H 1.08998 * 108.74176 * 161.36069 * 19 18 17 33 33 H 1.08999 * 108.64874 * 43.20235 * 19 18 17 34 34 H 1.09006 * 108.74635 * 305.59207 * 20 19 18 35 35 H 1.08998 * 108.74878 * 187.49905 * 20 19 18 36 36 H 1.08999 * 109.03158 * 206.77584 * 22 16 15 37 37 H 1.09003 * 109.02715 * 325.61848 * 22 16 15 38 38 H 1.07995 * 125.80579 * 179.97438 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2471 1.6176 0.0000 4 1 3.1008 1.6964 -1.2125 5 1 1.2821 2.7464 0.0006 6 1 3.1008 1.6962 1.2125 7 6 2.0079 -1.2037 -0.0005 8 1 3.0878 -1.2038 -0.0001 9 7 1.3212 -2.3929 -0.0067 10 6 1.8748 -3.6405 -0.0133 11 6 0.8577 -4.5384 -0.0174 12 7 0.9888 -5.9382 -0.0250 13 6 -0.1103 -6.7181 -0.0289 14 8 -1.2129 -6.2122 -0.0254 15 6 0.0303 -8.2185 -0.0365 16 7 -1.2964 -8.8339 -0.1746 17 6 -1.3479 -10.1345 0.5099 18 16 -2.9203 -10.9633 0.2460 19 6 -2.5679 -12.0214 -1.2018 20 6 -2.5650 -11.2966 -2.4459 21 16 -1.1958 -10.0927 -2.5734 22 6 -1.7835 -8.7313 -1.5585 23 6 -0.3514 -3.8198 -0.0138 24 7 -0.0717 -2.5410 -0.0024 25 1 -0.4849 0.8401 0.0004 26 1 2.9299 -3.8708 -0.0153 27 1 1.8705 -6.3426 -0.0274 28 1 0.6597 -8.5201 -0.8736 29 1 0.4869 -8.5453 0.8977 30 1 -0.5448 -10.7672 0.1318 31 1 -1.2029 -9.9794 1.5790 32 1 -3.3234 -12.8053 -1.2549 33 1 -1.5914 -12.4858 -1.0647 34 1 -3.5106 -10.7632 -2.5428 35 1 -2.4822 -12.0094 -3.2664 36 1 -2.8735 -8.7369 -1.5529 37 1 -1.4365 -7.7918 -1.9886 38 1 -1.3420 -4.2499 -0.0161 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900440591.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:03 Heat of formation + Delta-G solvation = 49.185317 kcal Electronic energy + Delta-G solvation = -22846.479391 eV Core-core repulsion = 19364.175318 eV Total energy + Delta-G solvation = -3482.304073 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.077 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.67664 -40.34518 -37.77701 -35.82369 -34.98284 -34.90921 -32.25191 -30.45878 -29.45997 -28.81630 -26.68172 -24.46418 -24.12953 -22.81426 -21.69428 -21.14011 -19.33366 -18.24818 -17.98055 -17.46356 -17.33657 -17.19392 -17.05116 -16.43363 -16.02954 -15.81570 -15.62359 -15.18247 -14.99572 -14.79032 -14.77341 -14.62831 -14.06119 -13.46941 -13.27108 -13.20944 -13.03737 -12.89601 -12.84804 -12.78437 -12.27241 -12.13748 -11.75730 -11.30751 -10.96835 -10.90109 -10.80396 -10.57973 -10.07985 -9.37494 -8.99395 -8.87810 -8.48660 -8.45517 -6.22499 0.49836 0.62893 1.25783 1.32465 1.39788 1.45008 1.56330 1.58023 1.90298 1.97493 2.18813 2.56362 2.66259 2.98131 3.10371 3.75231 3.80072 3.96786 4.09725 4.11942 4.17145 4.29193 4.35020 4.39669 4.46140 4.53523 4.64223 4.68105 4.74146 5.01607 5.10036 5.31559 5.51752 5.53637 5.77532 5.97886 6.35673 6.76344 6.84747 7.46767 7.52346 7.71849 8.53808 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.037156 B = 0.002284 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.400113 B =12256.163339 C =12333.975789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C -0.008 4.008 3 Si 1.019 2.981 4 H -0.253 1.253 5 H -0.279 1.279 6 H -0.253 1.253 7 C -0.355 4.355 8 H 0.141 0.859 9 N -0.170 5.170 10 C -0.083 4.083 11 C -0.039 4.039 12 N -0.620 5.620 13 C 0.492 3.508 14 O -0.560 6.560 15 C 0.063 3.937 16 N -0.550 5.550 17 C 0.109 3.891 18 S -0.260 6.260 19 C -0.077 4.077 20 C -0.066 4.066 21 S -0.334 6.334 22 C 0.131 3.869 23 C -0.061 4.061 24 N -0.312 5.312 25 H 0.276 0.724 26 H 0.188 0.812 27 H 0.419 0.581 28 H 0.092 0.908 29 H 0.137 0.863 30 H 0.088 0.912 31 H 0.126 0.874 32 H 0.142 0.858 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.138 0.862 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.188 -25.168 -2.350 25.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.219 4.219 3 Si 0.838 3.162 4 H -0.177 1.177 5 H -0.204 1.204 6 H -0.177 1.177 7 C -0.486 4.486 8 H 0.158 0.842 9 N 0.061 4.939 10 C -0.233 4.233 11 C -0.146 4.146 12 N -0.266 5.266 13 C 0.279 3.721 14 O -0.438 6.438 15 C -0.070 4.070 16 N -0.277 5.277 17 C -0.128 4.128 18 S -0.032 6.032 19 C -0.227 4.227 20 C -0.215 4.215 21 S -0.111 6.111 22 C -0.107 4.107 23 C -0.237 4.237 24 N -0.144 5.144 25 H 0.085 0.915 26 H 0.205 0.795 27 H 0.256 0.744 28 H 0.110 0.890 29 H 0.155 0.845 30 H 0.106 0.894 31 H 0.144 0.856 32 H 0.160 0.840 33 H 0.122 0.878 34 H 0.110 0.890 35 H 0.156 0.844 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 0.396 -23.316 -2.083 23.412 hybrid contribution 1.088 -0.268 -0.419 1.196 sum 1.483 -23.584 -2.503 23.763 Atomic orbital electron populations 1.70407 1.08442 1.29075 1.37545 1.26893 0.96472 1.04382 0.94195 0.84655 0.77530 0.73738 0.80284 1.17707 1.20394 1.17671 1.20565 0.92933 0.80944 1.54133 0.84194 1.44826 1.03595 1.04830 1.40662 1.22017 0.98848 0.84236 1.18209 1.17325 0.92565 0.83980 1.20685 1.42480 1.09954 1.02164 1.72022 1.21335 0.83658 0.90385 0.76695 1.90604 1.27543 1.75730 1.49915 1.21819 0.90582 0.88525 1.06064 1.59106 1.26463 1.24367 1.17780 1.23743 0.96858 0.89672 1.02556 1.87308 1.22413 1.51987 1.41470 1.22294 1.08189 0.99697 0.92483 1.22149 0.98108 0.99433 1.01788 1.87210 1.34581 1.21148 1.68163 1.23869 1.03085 0.97450 0.86339 1.24144 0.99050 0.90934 1.09524 1.78141 0.92085 1.16713 1.27466 0.91481 0.79524 0.74373 0.88979 0.84487 0.89405 0.85603 0.84014 0.87797 0.89033 0.84397 0.88860 0.89086 0.81783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.62 11.81 21.66 0.26 -48.36 16 2 C -0.01 -0.43 5.50 84.95 0.47 0.04 16 3 Si 1.02 39.07 29.55 68.60 2.03 41.10 16 4 H -0.25 -9.04 7.11 99.48 0.71 -8.33 16 5 H -0.28 -10.64 7.11 99.48 0.71 -9.93 16 6 H -0.25 -9.02 7.11 99.48 0.71 -8.31 16 7 C -0.35 -19.00 10.25 84.01 0.86 -18.14 16 8 H 0.14 6.46 7.83 -2.91 -0.02 6.43 16 9 N -0.17 -9.55 3.74 -190.02 -0.71 -10.26 16 10 C -0.08 -3.84 11.49 83.37 0.96 -2.88 16 11 C -0.04 -1.80 6.90 37.73 0.26 -1.54 16 12 N -0.62 -20.43 5.47 -303.93 -1.66 -22.09 16 13 C 0.49 16.08 7.22 87.66 0.63 16.72 16 14 O -0.56 -24.18 12.92 -3.11 -0.04 -24.22 16 15 C 0.06 1.30 5.53 85.56 0.47 1.78 16 16 N -0.55 -12.38 3.87 -934.36 -3.62 -16.00 16 17 C 0.11 1.80 5.14 127.66 0.66 2.46 16 18 S -0.26 -4.44 21.32 -56.49 -1.20 -5.65 16 19 C -0.08 -0.75 5.62 69.28 0.39 -0.36 16 20 C -0.07 -0.76 5.62 69.28 0.39 -0.37 16 21 S -0.33 -6.24 21.21 -56.49 -1.20 -7.44 16 22 C 0.13 3.15 5.09 127.66 0.65 3.80 16 23 C -0.06 -3.39 10.85 85.42 0.93 -2.47 16 24 N -0.31 -19.16 10.40 -56.47 -0.59 -19.75 16 25 H 0.28 14.95 8.31 -92.71 -0.77 14.18 16 26 H 0.19 6.76 8.06 -2.91 -0.02 6.74 16 27 H 0.42 9.66 8.83 -92.71 -0.82 8.84 16 28 H 0.09 1.59 7.90 -2.39 -0.02 1.57 16 29 H 0.14 1.92 7.76 -2.39 -0.02 1.90 16 30 H 0.09 1.14 7.63 -2.51 -0.02 1.12 16 31 H 0.13 1.91 8.12 -2.52 -0.02 1.89 16 32 H 0.14 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.10 0.85 7.99 -2.39 -0.02 0.83 16 34 H 0.09 1.18 8.00 -2.39 -0.02 1.16 16 35 H 0.14 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.09 2.40 7.65 -2.52 -0.02 2.38 16 37 H 0.09 2.69 6.95 -2.51 -0.02 2.67 16 38 H 0.17 9.27 5.92 -2.91 -0.02 9.25 16 Total: -1.00 -79.72 338.03 0.20 -79.52 By element: Atomic # 1 Polarization: 33.83 SS G_CDS: 0.28 Total: 34.11 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: 6.66 Total: -0.97 kcal Atomic # 7 Polarization: -110.13 SS G_CDS: -6.32 Total: -116.45 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.04 Total: -24.22 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 2.03 Total: 41.10 kcal Atomic # 16 Polarization: -10.68 SS G_CDS: -2.40 Total: -13.08 kcal Total: -79.72 0.20 -79.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900440591.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.702 kcal (2) G-P(sol) polarization free energy of solvation -79.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds