Wall clock time and date at job start Tue Mar 31 2020 15:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47090 * 113.42032 * 3 2 1 5 5 C 1.37102 * 120.00099 * 273.29502 * 4 3 2 6 6 H 1.08002 * 120.00289 * 190.75019 * 5 4 3 7 7 C 1.38957 * 119.99922 * 10.74343 * 5 4 3 8 8 N 1.31412 * 119.99547 * 9.85795 * 7 5 4 9 9 Si 1.86796 * 120.00046 * 189.86167 * 7 5 4 10 10 H 1.48494 * 109.47370 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47145 * 120.00348 * 9 7 5 12 12 H 1.48507 * 109.46985 * 239.99777 * 9 7 5 13 13 C 1.34778 * 120.00397 * 93.29396 * 4 3 2 14 14 O 1.21288 * 120.00222 * 174.27853 * 13 4 3 15 15 C 1.50697 * 119.99540 * 354.27365 * 13 4 3 16 16 H 1.08995 * 109.47311 * 324.51711 * 15 13 4 17 17 O 1.42897 * 109.47048 * 84.52435 * 15 13 4 18 18 C 1.50707 * 109.47096 * 204.52142 * 15 13 4 19 19 C 1.38262 * 119.99787 * 266.85812 * 18 15 13 20 20 C 1.38213 * 119.99753 * 179.80631 * 19 18 15 21 21 C 1.38251 * 120.00043 * 0.42251 * 20 19 18 22 22 C 1.38221 * 120.00273 * 359.80660 * 21 20 19 23 23 C 1.38212 * 119.99948 * 87.12354 * 18 15 13 24 24 C 1.50694 * 120.00187 * 359.97438 * 23 18 15 25 25 F 1.39903 * 109.47262 * 182.85039 * 24 23 18 26 26 F 1.39904 * 109.47169 * 302.84970 * 24 23 18 27 27 F 1.39899 * 109.47511 * 62.84939 * 24 23 18 28 28 H 1.08996 * 109.47457 * 353.41529 * 3 2 1 29 29 H 1.08998 * 109.46934 * 233.41532 * 3 2 1 30 30 H 0.96998 * 119.99507 * 179.97438 * 8 7 5 31 31 H 0.96694 * 114.00667 * 59.99813 * 17 15 13 32 32 H 1.07998 * 120.00274 * 359.97438 * 19 18 15 33 33 H 1.08002 * 119.99732 * 180.20076 * 20 19 18 34 34 H 1.08001 * 120.00216 * 179.78755 * 21 20 19 35 35 H 1.07998 * 120.00284 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0960 0.5499 -1.2674 5 6 3.2606 -0.2718 -2.3525 6 1 3.7794 0.0880 -3.2287 7 6 2.7599 -1.5678 -2.3249 8 7 1.9657 -1.9446 -1.3480 9 14 3.2157 -2.7741 -3.6763 10 1 4.1157 -2.1080 -4.6516 11 1 3.9091 -3.9449 -3.0815 12 1 1.9839 -3.2285 -4.3704 13 6 3.3833 1.8629 -1.3668 14 8 3.8846 2.2989 -2.3815 15 6 3.0816 2.7893 -0.2171 16 1 2.1630 2.4701 0.2752 17 8 4.1608 2.7541 0.7188 18 6 2.9116 4.1942 -0.7353 19 6 3.9923 5.0562 -0.7631 20 6 3.8374 6.3434 -1.2421 21 6 2.5998 6.7718 -1.6852 22 6 1.5184 5.9116 -1.6531 23 6 1.6743 4.6227 -1.1776 24 6 0.4952 3.6849 -1.1423 25 9 -0.6218 4.3191 -1.6966 26 9 0.7923 2.5342 -1.8805 27 9 0.2206 3.3307 0.1829 28 1 2.9718 -1.0200 0.1178 29 1 2.9710 0.6133 0.8252 30 1 1.6159 -2.8491 -1.3290 31 1 5.0116 3.0265 0.3486 32 1 4.9581 4.7229 -0.4131 33 1 4.6823 7.0157 -1.2668 34 1 2.4780 7.7787 -2.0563 35 1 0.5516 6.2464 -1.9988 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900464998.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:42 Heat of formation + Delta-G solvation = -150.651070 kcal Electronic energy + Delta-G solvation = -29760.252730 eV Core-core repulsion = 25116.936787 eV Total energy + Delta-G solvation = -4643.315943 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.86378 -47.43641 -47.19582 -40.14582 -38.60565 -36.39097 -35.67128 -34.25687 -32.28670 -31.83239 -31.25655 -27.76331 -27.10132 -25.74658 -24.53656 -22.22637 -21.73509 -19.67309 -18.53566 -18.22640 -18.08559 -17.98183 -17.42429 -16.46485 -15.99482 -15.66032 -15.17676 -14.84070 -14.55370 -14.46525 -14.15599 -14.09677 -13.90940 -13.73846 -13.42032 -13.38718 -13.26177 -12.98402 -12.92010 -12.68376 -12.56796 -12.01585 -11.83244 -11.52336 -11.49405 -11.26883 -11.22081 -11.11438 -10.60559 -10.48961 -10.38826 -10.30861 -9.33479 -9.22083 -9.00400 -8.50130 -8.17701 -6.50656 -4.06459 0.94941 1.23324 2.90588 3.01568 3.18477 3.24592 3.35030 3.50465 3.73431 3.97304 4.07112 4.17701 4.24206 4.45679 4.55537 4.70354 4.78964 4.83037 4.89208 4.92949 5.18650 5.28322 5.34892 5.51650 5.58531 5.65582 5.83840 6.14330 6.18156 6.29239 6.32973 6.72364 6.74948 7.39925 7.53543 7.75524 8.19853 8.87884 8.91393 9.10806 9.59061 10.49010 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.015838 B = 0.005555 C = 0.005017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.518455 B = 5039.569458 C = 5580.026468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C 0.251 3.749 3 C 0.213 3.787 4 N -0.424 5.424 5 C -0.301 4.301 6 H 0.112 0.888 7 C 0.029 3.971 8 N -0.885 5.885 9 Si 0.937 3.063 10 H -0.267 1.267 11 H -0.278 1.278 12 H -0.281 1.281 13 C 0.427 3.573 14 O -0.566 6.566 15 C 0.115 3.885 16 H 0.119 0.881 17 O -0.538 6.538 18 C -0.034 4.034 19 C -0.100 4.100 20 C -0.087 4.087 21 C -0.126 4.126 22 C -0.074 4.074 23 C -0.170 4.170 24 C 0.498 3.502 25 F -0.181 7.181 26 F -0.155 7.155 27 F -0.176 7.176 28 H 0.143 0.857 29 H 0.084 0.916 30 H 0.275 0.725 31 H 0.379 0.621 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.823 12.846 3.833 13.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.156 5.156 2 C -0.067 4.067 3 C 0.086 3.914 4 N -0.143 5.143 5 C -0.428 4.428 6 H 0.130 0.870 7 C -0.173 4.173 8 N -0.525 5.525 9 Si 0.764 3.236 10 H -0.191 1.191 11 H -0.203 1.203 12 H -0.207 1.207 13 C 0.213 3.787 14 O -0.449 6.449 15 C 0.052 3.948 16 H 0.137 0.863 17 O -0.344 6.344 18 C -0.035 4.035 19 C -0.118 4.118 20 C -0.105 4.105 21 C -0.144 4.144 22 C -0.092 4.092 23 C -0.172 4.172 24 C 0.444 3.556 25 F -0.163 7.163 26 F -0.136 7.136 27 F -0.157 7.157 28 H 0.161 0.839 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.228 0.772 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.816 12.624 3.767 13.299 hybrid contribution 0.518 -0.825 -1.038 1.423 sum 2.334 11.800 2.728 12.334 Atomic orbital electron populations 1.80875 1.13502 1.11771 1.09449 1.29116 0.95234 0.90543 0.91822 1.19196 0.81907 1.03897 0.86439 1.43626 1.54769 1.05739 1.10201 1.19924 1.34487 0.92714 0.95682 0.86998 1.25333 0.95122 0.98329 0.98526 1.69732 1.30416 1.20093 1.32309 0.85670 0.78430 0.79491 0.80038 1.19113 1.20334 1.20734 1.20200 0.86720 0.82727 0.89011 1.90569 1.47509 1.75078 1.31721 1.21256 0.92783 0.90280 0.90460 0.86345 1.86606 1.19435 1.90611 1.37701 1.19889 0.92390 0.95901 0.95281 1.20793 0.97957 0.93421 0.99586 1.21284 0.97517 0.95648 0.96008 1.21096 0.92530 0.99883 1.00917 1.20946 1.00216 0.91534 0.96468 1.19801 0.93068 0.95739 1.08582 1.18423 0.82510 0.80439 0.74209 1.93124 1.55518 1.81976 1.85666 1.93390 1.92775 1.50714 1.76717 1.93187 1.94322 1.92606 1.35578 0.83946 0.89772 0.91399 0.77213 0.84926 0.85032 0.84984 0.84549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -11.79 18.54 42.15 0.78 -11.01 16 2 C 0.25 5.86 12.81 -20.76 -0.27 5.59 16 3 C 0.21 4.52 4.83 -6.83 -0.03 4.48 16 4 N -0.42 -9.98 2.59 -117.94 -0.31 -10.29 16 5 C -0.30 -7.72 9.50 -14.93 -0.14 -7.86 16 6 H 0.11 3.02 7.22 -52.49 -0.38 2.64 16 7 C 0.03 0.71 5.24 -17.46 -0.09 0.62 16 8 N -0.88 -22.01 8.33 55.50 0.46 -21.54 16 9 Si 0.94 19.85 29.56 -169.99 -5.03 14.82 16 10 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 11 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 12 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 13 C 0.43 9.53 5.27 -10.99 -0.06 9.47 16 14 O -0.57 -14.12 15.86 5.55 0.09 -14.04 16 15 C 0.11 2.11 1.86 -29.03 -0.05 2.05 16 16 H 0.12 2.30 4.31 -51.93 -0.22 2.08 16 17 O -0.54 -8.23 12.40 -35.23 -0.44 -8.66 16 18 C -0.03 -0.56 4.40 -104.62 -0.46 -1.02 16 19 C -0.10 -1.34 9.31 -39.58 -0.37 -1.71 16 20 C -0.09 -0.96 10.05 -39.59 -0.40 -1.36 16 21 C -0.13 -1.40 10.05 -39.58 -0.40 -1.80 16 22 C -0.07 -0.99 9.43 -39.58 -0.37 -1.37 16 23 C -0.17 -2.87 5.37 -104.63 -0.56 -3.43 16 24 C 0.50 9.39 2.81 36.00 0.10 9.50 16 25 F -0.18 -3.14 15.98 2.25 0.04 -3.11 16 26 F -0.15 -3.52 14.77 2.25 0.03 -3.48 16 27 F -0.18 -3.33 15.56 2.25 0.04 -3.29 16 28 H 0.14 3.08 6.19 -51.93 -0.32 2.76 16 29 H 0.08 1.52 6.23 -51.93 -0.32 1.20 16 30 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 31 H 0.38 4.55 7.31 45.56 0.33 4.88 16 32 H 0.13 1.45 6.43 -52.49 -0.34 1.11 16 33 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.14 1.58 7.16 -52.49 -0.38 1.21 16 LS Contribution 315.11 15.07 4.75 4.75 Total: -1.00 -31.32 315.11 -4.29 -35.61 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -1.61 Total: 7.06 kcal Atomic # 6 Polarization: 16.28 SS G_CDS: -3.10 Total: 13.18 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: 0.94 Total: -42.84 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: -0.35 Total: -22.70 kcal Atomic # 9 Polarization: -9.99 SS G_CDS: 0.10 Total: -9.88 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.03 Total: 14.82 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.32 -4.29 -35.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900464998.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.040 kcal (2) G-P(sol) polarization free energy of solvation -31.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds