Wall clock time and date at job start Tue Mar 31 2020 15:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47090 * 113.42032 * 3 2 1 5 5 C 1.37102 * 120.00099 * 273.29502 * 4 3 2 6 6 H 1.08002 * 120.00289 * 190.75019 * 5 4 3 7 7 C 1.38957 * 119.99922 * 10.74343 * 5 4 3 8 8 N 1.31412 * 119.99547 * 9.85795 * 7 5 4 9 9 Si 1.86796 * 120.00046 * 189.86167 * 7 5 4 10 10 H 1.48494 * 109.47370 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47145 * 120.00348 * 9 7 5 12 12 H 1.48507 * 109.46985 * 239.99777 * 9 7 5 13 13 C 1.34778 * 120.00397 * 93.29396 * 4 3 2 14 14 O 1.21288 * 120.00222 * 174.27853 * 13 4 3 15 15 C 1.50697 * 119.99540 * 354.27365 * 13 4 3 16 16 H 1.08995 * 109.47311 * 324.51711 * 15 13 4 17 17 O 1.42897 * 109.47048 * 84.52435 * 15 13 4 18 18 C 1.50707 * 109.47096 * 204.52142 * 15 13 4 19 19 C 1.38262 * 119.99787 * 266.85812 * 18 15 13 20 20 C 1.38213 * 119.99753 * 179.80631 * 19 18 15 21 21 C 1.38251 * 120.00043 * 0.42251 * 20 19 18 22 22 C 1.38221 * 120.00273 * 359.80660 * 21 20 19 23 23 C 1.38212 * 119.99948 * 87.12354 * 18 15 13 24 24 C 1.50694 * 120.00187 * 359.97438 * 23 18 15 25 25 F 1.39903 * 109.47262 * 182.85039 * 24 23 18 26 26 F 1.39904 * 109.47169 * 302.84970 * 24 23 18 27 27 F 1.39899 * 109.47511 * 62.84939 * 24 23 18 28 28 H 1.08996 * 109.47457 * 353.41529 * 3 2 1 29 29 H 1.08998 * 109.46934 * 233.41532 * 3 2 1 30 30 H 0.96998 * 119.99507 * 179.97438 * 8 7 5 31 31 H 0.96694 * 114.00667 * 59.99813 * 17 15 13 32 32 H 1.07998 * 120.00274 * 359.97438 * 19 18 15 33 33 H 1.08002 * 119.99732 * 180.20076 * 20 19 18 34 34 H 1.08001 * 120.00216 * 179.78755 * 21 20 19 35 35 H 1.07998 * 120.00284 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0960 0.5499 -1.2674 5 6 3.2606 -0.2718 -2.3525 6 1 3.7794 0.0880 -3.2287 7 6 2.7599 -1.5678 -2.3249 8 7 1.9657 -1.9446 -1.3480 9 14 3.2157 -2.7741 -3.6763 10 1 4.1157 -2.1080 -4.6516 11 1 3.9091 -3.9449 -3.0815 12 1 1.9839 -3.2285 -4.3704 13 6 3.3833 1.8629 -1.3668 14 8 3.8846 2.2989 -2.3815 15 6 3.0816 2.7893 -0.2171 16 1 2.1630 2.4701 0.2752 17 8 4.1608 2.7541 0.7188 18 6 2.9116 4.1942 -0.7353 19 6 3.9923 5.0562 -0.7631 20 6 3.8374 6.3434 -1.2421 21 6 2.5998 6.7718 -1.6852 22 6 1.5184 5.9116 -1.6531 23 6 1.6743 4.6227 -1.1776 24 6 0.4952 3.6849 -1.1423 25 9 -0.6218 4.3191 -1.6966 26 9 0.7923 2.5342 -1.8805 27 9 0.2206 3.3307 0.1829 28 1 2.9718 -1.0200 0.1178 29 1 2.9710 0.6133 0.8252 30 1 1.6159 -2.8491 -1.3290 31 1 5.0116 3.0265 0.3486 32 1 4.9581 4.7229 -0.4131 33 1 4.6823 7.0157 -1.2668 34 1 2.4780 7.7787 -2.0563 35 1 0.5516 6.2464 -1.9988 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900464998.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:19:41 Heat of formation + Delta-G solvation = -171.365268 kcal Electronic energy + Delta-G solvation = -29761.150965 eV Core-core repulsion = 25116.936787 eV Total energy + Delta-G solvation = -4644.214178 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.34220 -48.87216 -48.76666 -41.51108 -40.00668 -37.85977 -37.38231 -36.14158 -33.74392 -33.33554 -32.32119 -29.46519 -28.60989 -27.08819 -26.18549 -23.38057 -22.96303 -21.24773 -19.93557 -19.72942 -19.65955 -19.57872 -18.90044 -18.11393 -17.48150 -17.05049 -16.69832 -16.03341 -15.97201 -15.86360 -15.66498 -15.53544 -15.39516 -15.22615 -14.95692 -14.92567 -14.80088 -14.78183 -14.34876 -14.01078 -13.70960 -13.68159 -13.34604 -13.29356 -13.04911 -12.97845 -12.65390 -12.34503 -12.24225 -12.18203 -12.09977 -11.81753 -11.18667 -10.46017 -10.18878 -10.05605 -9.86533 -8.38345 -6.01405 -0.11063 0.23118 1.30680 1.43906 1.54689 1.56645 1.69084 1.95165 2.26630 2.33539 2.46774 2.61626 2.88334 2.96110 2.97959 3.23823 3.31270 3.43031 3.59818 3.72943 3.87029 4.01194 4.16891 4.37032 4.46881 4.50802 4.62078 4.86055 5.00473 5.17811 5.29871 5.37033 5.42642 5.81388 5.88892 6.29823 6.46444 7.01717 7.04226 7.26651 7.77536 8.58877 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.015838 B = 0.005555 C = 0.005017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.518455 B = 5039.569458 C = 5580.026468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C 0.261 3.739 3 C 0.218 3.782 4 N -0.439 5.439 5 C -0.328 4.328 6 H 0.090 0.910 7 C -0.001 4.001 8 N -0.899 5.899 9 Si 0.995 3.005 10 H -0.270 1.270 11 H -0.262 1.262 12 H -0.288 1.288 13 C 0.430 3.570 14 O -0.595 6.595 15 C 0.131 3.869 16 H 0.104 0.896 17 O -0.531 6.531 18 C -0.067 4.067 19 C -0.107 4.107 20 C -0.076 4.076 21 C -0.113 4.113 22 C -0.083 4.083 23 C -0.195 4.195 24 C 0.491 3.509 25 F -0.177 7.177 26 F -0.185 7.185 27 F -0.182 7.182 28 H 0.141 0.859 29 H 0.117 0.883 30 H 0.276 0.724 31 H 0.395 0.605 32 H 0.155 0.845 33 H 0.176 0.824 34 H 0.175 0.825 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.364 14.990 4.015 16.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.188 5.188 2 C -0.056 4.056 3 C 0.091 3.909 4 N -0.158 5.158 5 C -0.455 4.455 6 H 0.108 0.892 7 C -0.201 4.201 8 N -0.539 5.539 9 Si 0.819 3.181 10 H -0.194 1.194 11 H -0.186 1.186 12 H -0.215 1.215 13 C 0.218 3.782 14 O -0.480 6.480 15 C 0.068 3.932 16 H 0.122 0.878 17 O -0.338 6.338 18 C -0.068 4.068 19 C -0.124 4.124 20 C -0.093 4.093 21 C -0.130 4.130 22 C -0.101 4.101 23 C -0.197 4.197 24 C 0.437 3.563 25 F -0.158 7.158 26 F -0.166 7.166 27 F -0.163 7.163 28 H 0.158 0.842 29 H 0.134 0.866 30 H 0.086 0.914 31 H 0.246 0.754 32 H 0.173 0.827 33 H 0.193 0.807 34 H 0.192 0.808 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 3.370 14.775 3.974 15.667 hybrid contribution 0.058 -1.340 -1.109 1.740 sum 3.428 13.435 2.865 14.159 Atomic orbital electron populations 1.80854 1.14498 1.12928 1.10518 1.29563 0.95706 0.89533 0.90848 1.19329 0.80571 1.04398 0.86594 1.43759 1.55327 1.06347 1.10401 1.19827 1.35707 0.93835 0.96146 0.89215 1.25971 0.94694 0.99115 1.00321 1.69819 1.30593 1.20275 1.33227 0.84835 0.77698 0.77892 0.77697 1.19407 1.18640 1.21489 1.20974 0.84734 0.82674 0.89793 1.90526 1.48457 1.75666 1.33359 1.20835 0.92872 0.90677 0.88835 0.87838 1.86581 1.19837 1.90705 1.36698 1.19909 0.93680 0.95490 0.97723 1.21201 0.97816 0.94121 0.99304 1.21832 0.98909 0.95023 0.93578 1.21637 0.91506 1.01067 0.98836 1.21268 1.02009 0.90612 0.96170 1.19851 0.92124 0.96653 1.11032 1.18866 0.83745 0.80091 0.73593 1.93115 1.55495 1.81634 1.85581 1.93319 1.93068 1.52741 1.77494 1.93162 1.94484 1.92750 1.35894 0.84206 0.86552 0.91377 0.75355 0.82742 0.80697 0.80808 0.83244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -25.74 18.54 20.00 0.37 -25.37 16 2 C 0.26 12.43 12.81 89.44 1.15 13.58 16 3 C 0.22 9.34 4.83 84.57 0.41 9.74 16 4 N -0.44 -21.07 2.59 -645.43 -1.67 -22.74 16 5 C -0.33 -17.26 9.50 84.04 0.80 -16.47 16 6 H 0.09 5.03 7.22 -2.91 -0.02 5.01 16 7 C 0.00 -0.03 5.24 84.93 0.45 0.41 16 8 N -0.90 -45.19 8.33 21.67 0.18 -45.01 16 9 Si 0.99 41.07 29.56 68.60 2.03 43.10 16 10 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 11 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 12 H -0.29 -12.20 7.11 99.48 0.71 -11.49 16 13 C 0.43 19.45 5.27 87.66 0.46 19.91 16 14 O -0.60 -30.20 15.86 -3.05 -0.05 -30.25 16 15 C 0.13 4.76 1.86 29.10 0.05 4.81 16 16 H 0.10 4.07 4.31 -2.39 -0.01 4.06 16 17 O -0.53 -15.42 12.40 -148.98 -1.85 -17.27 16 18 C -0.07 -2.18 4.40 -19.86 -0.09 -2.27 16 19 C -0.11 -2.56 9.31 22.27 0.21 -2.35 16 20 C -0.08 -1.33 10.05 22.27 0.22 -1.10 16 21 C -0.11 -2.01 10.05 22.27 0.22 -1.78 16 22 C -0.08 -2.06 9.43 22.27 0.21 -1.85 16 23 C -0.20 -6.46 5.37 -19.87 -0.11 -6.56 16 24 C 0.49 18.92 2.81 71.23 0.20 19.12 16 25 F -0.18 -6.23 15.98 44.97 0.72 -5.51 16 26 F -0.18 -8.73 14.77 44.97 0.66 -8.06 16 27 F -0.18 -7.08 15.56 44.97 0.70 -6.38 16 28 H 0.14 6.10 6.19 -2.39 -0.01 6.08 16 29 H 0.12 4.17 6.23 -2.39 -0.01 4.15 16 30 H 0.28 13.36 8.31 -92.71 -0.77 12.59 16 31 H 0.39 8.64 7.31 -74.06 -0.54 8.09 16 32 H 0.16 2.84 6.43 -2.91 -0.02 2.82 16 33 H 0.18 1.56 8.06 -2.91 -0.02 1.53 16 34 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 35 H 0.15 3.18 7.16 -2.91 -0.02 3.16 16 Total: -1.00 -70.43 315.11 5.94 -64.49 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 0.66 Total: 17.81 kcal Atomic # 6 Polarization: 31.01 SS G_CDS: 4.18 Total: 35.20 kcal Atomic # 7 Polarization: -92.00 SS G_CDS: -1.12 Total: -93.12 kcal Atomic # 8 Polarization: -45.62 SS G_CDS: -1.90 Total: -47.52 kcal Atomic # 9 Polarization: -22.04 SS G_CDS: 2.08 Total: -19.96 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Total: -70.43 5.94 -64.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900464998.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.879 kcal (2) G-P(sol) polarization free energy of solvation -70.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds