Wall clock time and date at job start Tue Mar 31 2020 14:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00611 * 2 1 4 4 H 1.48493 * 109.47373 * 240.00082 * 3 2 1 5 5 H 1.48504 * 109.46941 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47560 * 119.99462 * 3 2 1 7 7 C 1.37881 * 119.99741 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99875 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99816 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46726 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47046 * 179.97438 * 10 9 7 12 12 O 1.45200 * 109.47462 * 180.02562 * 11 10 9 13 13 C 1.34227 * 116.99999 * 180.02562 * 12 11 10 14 14 O 1.20827 * 120.00156 * 359.97438 * 13 12 11 15 15 C 1.50699 * 119.99857 * 179.97438 * 13 12 11 16 16 C 1.53000 * 109.47016 * 179.97438 * 15 13 12 17 17 S 1.81408 * 109.46995 * 180.02562 * 16 15 13 18 18 C 1.76200 * 102.99890 * 180.02562 * 17 16 15 19 19 C 1.38943 * 120.08321 * 359.96994 * 18 17 16 20 20 C 1.38095 * 119.93341 * 180.02562 * 19 18 17 21 21 C 1.38315 * 120.09588 * 0.02843 * 20 19 18 22 22 C 1.38285 * 120.17055 * 359.97438 * 21 20 19 23 23 C 1.38189 * 120.06580 * 359.97438 * 22 21 20 24 24 Cl 1.73605 * 120.05138 * 180.02562 * 23 22 21 25 25 H 0.97004 * 119.99544 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.47166 * 60.00041 * 9 7 2 27 27 H 1.08999 * 109.47028 * 299.99967 * 9 7 2 28 28 H 1.09002 * 109.47408 * 60.00676 * 10 9 7 29 29 H 1.08999 * 109.47535 * 299.99896 * 10 9 7 30 30 H 1.08998 * 109.47286 * 59.99898 * 11 10 9 31 31 H 1.08999 * 109.46908 * 300.00329 * 11 10 9 32 32 H 1.09006 * 109.47166 * 59.99836 * 15 13 12 33 33 H 1.09000 * 109.46952 * 299.99915 * 15 13 12 34 34 H 1.08992 * 109.47057 * 59.99942 * 16 15 13 35 35 H 1.09000 * 109.47233 * 299.99795 * 16 15 13 36 36 H 1.08003 * 120.03525 * 0.05021 * 19 18 17 37 37 H 1.08000 * 119.95248 * 180.29889 * 20 19 18 38 38 H 1.08003 * 119.91246 * 179.97438 * 21 20 19 39 39 H 1.07997 * 119.97004 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2508 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9872 0.0012 12 8 2.4235 -6.0909 0.0018 13 6 1.9103 -7.3312 0.0019 14 8 0.7125 -7.4894 0.0019 15 6 2.8283 -8.5263 0.0019 16 6 1.9949 -9.8095 0.0026 17 16 3.0999 -11.2482 0.0035 18 6 1.9797 -12.6082 0.0035 19 6 0.6089 -12.3815 0.0036 20 6 -0.2663 -13.4497 0.0041 21 6 0.2199 -14.7446 0.0052 22 6 1.5834 -14.9751 0.0051 23 6 2.4653 -13.9112 0.0035 24 17 4.1770 -14.2009 0.0028 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6238 -2.5567 0.8903 28 1 2.8717 -3.6045 0.8906 29 1 2.8717 -3.6045 -0.8894 30 1 0.8530 -5.0452 -0.8885 31 1 0.8536 -5.0446 0.8914 32 1 3.4572 -8.5015 0.8919 33 1 3.4570 -8.5015 -0.8881 34 1 1.3657 -9.8345 -0.8870 35 1 1.3664 -9.8340 0.8929 36 1 0.2281 -11.3708 0.0028 37 1 -1.3318 -13.2739 -0.0007 38 1 -0.4672 -15.5779 0.0060 39 1 1.9595 -15.9874 0.0055 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912957531.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:28 Heat of formation + Delta-G solvation = -92.713010 kcal Electronic energy + Delta-G solvation = -21106.121140 eV Core-core repulsion = 17551.034685 eV Total energy + Delta-G solvation = -3555.086455 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.37576 -39.56825 -36.88674 -36.72006 -34.04557 -33.52577 -31.79195 -31.63284 -31.14333 -27.41483 -25.60024 -23.48458 -23.33509 -22.75844 -20.71692 -20.30174 -18.35678 -17.84651 -16.88773 -16.79784 -16.58479 -16.00147 -15.94462 -15.28375 -15.15777 -14.50335 -14.37547 -14.24138 -14.05391 -13.79194 -13.05776 -12.84146 -12.30417 -12.28390 -12.17050 -12.00240 -11.96563 -11.87494 -11.84362 -11.39837 -10.97880 -10.73749 -10.68136 -10.56003 -10.46555 -10.45140 -10.29271 -9.76702 -9.53757 -9.33153 -9.20513 -8.40787 -7.88039 -6.05708 -4.08950 0.55408 0.68032 0.86773 1.62915 1.94763 2.19739 2.86510 3.04846 3.31125 3.35511 3.38090 4.17137 4.21710 4.41431 4.43225 4.44031 4.73230 4.75914 4.80241 4.93961 5.08629 5.19338 5.25209 5.30223 5.38931 5.51468 5.52060 5.56062 5.66575 5.88654 5.95534 6.19862 6.42328 6.49465 6.77659 6.94124 7.56852 7.67670 7.79036 7.92212 8.33122 8.96982 9.55427 11.05639 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.035398 B = 0.001616 C = 0.001549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.822335 B =17322.926329 C =18077.396852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.109 4.109 11 C 0.068 3.932 12 O -0.355 6.355 13 C 0.464 3.536 14 O -0.513 6.513 15 C -0.100 4.100 16 C -0.109 4.109 17 S -0.074 6.074 18 C -0.080 4.080 19 C -0.123 4.123 20 C -0.094 4.094 21 C -0.115 4.115 22 C -0.093 4.093 23 C -0.024 4.024 24 Cl -0.053 7.053 25 H 0.262 0.738 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.137 0.863 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.648 -32.772 0.006 32.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.147 4.147 11 C -0.005 4.005 12 O -0.271 6.271 13 C 0.305 3.695 14 O -0.402 6.402 15 C -0.139 4.139 16 C -0.258 4.258 17 S 0.172 5.828 18 C -0.194 4.194 19 C -0.147 4.147 20 C -0.114 4.114 21 C -0.136 4.136 22 C -0.114 4.114 23 C -0.057 4.057 24 Cl -0.024 7.024 25 H 0.072 0.928 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.154 0.846 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.546 -32.538 0.006 32.854 hybrid contribution -1.066 0.912 -0.001 1.403 sum 3.480 -31.626 0.005 31.817 Atomic orbital electron populations 1.69955 1.06091 1.26897 1.50387 1.25031 0.94893 0.99382 0.95150 0.86593 0.79523 0.82829 0.78677 1.20176 1.21254 1.20169 1.21134 0.93102 0.90672 1.51225 0.92450 1.19050 0.93831 0.90741 0.97686 1.21779 0.99965 0.90925 1.02049 1.23551 0.91174 0.83492 1.02236 1.86494 1.42731 1.15026 1.82880 1.23228 0.88300 0.85132 0.72813 1.90670 1.16946 1.86944 1.45625 1.20955 0.97655 0.87908 1.07377 1.23567 1.00557 0.93977 1.07674 1.85725 1.10405 0.95221 1.91423 1.21697 0.97095 0.95691 1.04925 1.21292 0.90910 1.00637 1.01825 1.21218 1.00191 0.92224 0.97732 1.21182 0.94640 0.97399 1.00388 1.21024 0.92778 0.98086 0.99468 1.20419 0.85722 0.92728 1.06845 1.98388 1.11426 1.95897 1.96717 0.92822 0.96233 0.96225 0.92082 0.92072 0.91407 0.91414 0.86544 0.86538 0.88095 0.88098 0.84553 0.84861 0.84763 0.84445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.11 -2.23 5.53 -26.73 -0.15 -2.38 16 11 C 0.07 1.22 5.47 37.16 0.20 1.42 16 12 O -0.36 -5.58 10.22 -39.25 -0.40 -5.99 16 13 C 0.46 6.31 7.96 36.01 0.29 6.60 16 14 O -0.51 -8.29 15.73 -18.75 -0.29 -8.59 16 15 C -0.10 -0.91 5.82 -27.88 -0.16 -1.07 16 16 C -0.11 -0.95 3.62 37.16 0.13 -0.81 16 17 S -0.07 -0.66 20.83 -107.50 -2.24 -2.90 16 18 C -0.08 -0.73 6.11 -39.02 -0.24 -0.97 16 19 C -0.12 -0.99 9.36 -39.37 -0.37 -1.36 16 20 C -0.09 -0.61 10.04 -39.61 -0.40 -1.01 16 21 C -0.12 -0.68 10.04 -39.54 -0.40 -1.07 16 22 C -0.09 -0.64 9.82 -39.58 -0.39 -1.02 16 23 C -0.02 -0.21 6.34 -39.30 -0.25 -0.46 16 24 Cl -0.05 -0.46 27.84 -51.86 -1.44 -1.91 16 25 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.07 1.22 8.13 -51.93 -0.42 0.79 16 31 H 0.07 1.21 8.13 -51.93 -0.42 0.79 16 32 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.10 0.89 7.70 -51.93 -0.40 0.49 16 35 H 0.10 0.89 7.71 -51.92 -0.40 0.49 16 36 H 0.14 1.03 5.88 -52.48 -0.31 0.72 16 37 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 38 H 0.13 0.44 8.06 -52.48 -0.42 0.02 16 39 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 LS Contribution 365.06 15.07 5.50 5.50 Total: -1.00 -31.67 365.06 -10.74 -42.41 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: -5.30 Total: -3.96 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: -2.28 Total: -15.08 kcal Atomic # 7 Polarization: -26.64 SS G_CDS: 0.74 Total: -25.90 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.70 Total: -14.57 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -0.66 SS G_CDS: -2.24 Total: -2.90 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.44 Total: -1.91 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.67 -10.74 -42.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912957531.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.306 kcal (2) G-P(sol) polarization free energy of solvation -31.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds