Wall clock time and date at job start Tue Mar 31 2020 14:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00611 * 2 1 4 4 H 1.48493 * 109.47373 * 240.00082 * 3 2 1 5 5 H 1.48504 * 109.46941 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47560 * 119.99462 * 3 2 1 7 7 C 1.37881 * 119.99741 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99875 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99816 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46726 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47046 * 179.97438 * 10 9 7 12 12 O 1.45200 * 109.47462 * 180.02562 * 11 10 9 13 13 C 1.34227 * 116.99999 * 180.02562 * 12 11 10 14 14 O 1.20827 * 120.00156 * 359.97438 * 13 12 11 15 15 C 1.50699 * 119.99857 * 179.97438 * 13 12 11 16 16 C 1.53000 * 109.47016 * 179.97438 * 15 13 12 17 17 S 1.81408 * 109.46995 * 180.02562 * 16 15 13 18 18 C 1.76200 * 102.99890 * 180.02562 * 17 16 15 19 19 C 1.38943 * 120.08321 * 359.96994 * 18 17 16 20 20 C 1.38095 * 119.93341 * 180.02562 * 19 18 17 21 21 C 1.38315 * 120.09588 * 0.02843 * 20 19 18 22 22 C 1.38285 * 120.17055 * 359.97438 * 21 20 19 23 23 C 1.38189 * 120.06580 * 359.97438 * 22 21 20 24 24 Cl 1.73605 * 120.05138 * 180.02562 * 23 22 21 25 25 H 0.97004 * 119.99544 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.47166 * 60.00041 * 9 7 2 27 27 H 1.08999 * 109.47028 * 299.99967 * 9 7 2 28 28 H 1.09002 * 109.47408 * 60.00676 * 10 9 7 29 29 H 1.08999 * 109.47535 * 299.99896 * 10 9 7 30 30 H 1.08998 * 109.47286 * 59.99898 * 11 10 9 31 31 H 1.08999 * 109.46908 * 300.00329 * 11 10 9 32 32 H 1.09006 * 109.47166 * 59.99836 * 15 13 12 33 33 H 1.09000 * 109.46952 * 299.99915 * 15 13 12 34 34 H 1.08992 * 109.47057 * 59.99942 * 16 15 13 35 35 H 1.09000 * 109.47233 * 299.99795 * 16 15 13 36 36 H 1.08003 * 120.03525 * 0.05021 * 19 18 17 37 37 H 1.08000 * 119.95248 * 180.29889 * 20 19 18 38 38 H 1.08003 * 119.91246 * 179.97438 * 21 20 19 39 39 H 1.07997 * 119.97004 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2508 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9872 0.0012 12 8 2.4235 -6.0909 0.0018 13 6 1.9103 -7.3312 0.0019 14 8 0.7125 -7.4894 0.0019 15 6 2.8283 -8.5263 0.0019 16 6 1.9949 -9.8095 0.0026 17 16 3.0999 -11.2482 0.0035 18 6 1.9797 -12.6082 0.0035 19 6 0.6089 -12.3815 0.0036 20 6 -0.2663 -13.4497 0.0041 21 6 0.2199 -14.7446 0.0052 22 6 1.5834 -14.9751 0.0051 23 6 2.4653 -13.9112 0.0035 24 17 4.1770 -14.2009 0.0028 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6238 -2.5567 0.8903 28 1 2.8717 -3.6045 0.8906 29 1 2.8717 -3.6045 -0.8894 30 1 0.8530 -5.0452 -0.8885 31 1 0.8536 -5.0446 0.8914 32 1 3.4572 -8.5015 0.8919 33 1 3.4570 -8.5015 -0.8881 34 1 1.3657 -9.8345 -0.8870 35 1 1.3664 -9.8340 0.8929 36 1 0.2281 -11.3708 0.0028 37 1 -1.3318 -13.2739 -0.0007 38 1 -0.4672 -15.5779 0.0060 39 1 1.9595 -15.9874 0.0055 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000912957531.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:27 Heat of formation + Delta-G solvation = -107.219609 kcal Electronic energy + Delta-G solvation = -21106.750194 eV Core-core repulsion = 17551.034685 eV Total energy + Delta-G solvation = -3555.715508 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.57116 -40.09972 -38.01957 -37.48836 -35.94297 -34.40001 -33.62165 -32.25531 -31.68165 -29.16338 -26.71701 -24.93747 -23.99734 -23.51747 -22.17755 -21.69146 -19.02592 -18.88930 -18.52247 -17.95148 -17.56192 -17.19297 -16.55706 -16.49622 -16.33531 -15.75636 -15.30322 -15.00631 -14.89945 -14.70368 -14.36814 -13.97733 -13.80550 -13.77848 -13.44713 -12.81731 -12.76627 -12.70849 -12.54865 -12.53554 -12.53251 -12.38870 -12.08211 -12.00572 -11.82779 -11.43100 -11.41883 -11.25039 -11.20288 -10.85640 -10.56959 -9.89072 -8.52661 -8.22007 -6.33558 -0.00108 0.14075 0.18411 0.99590 1.09705 1.30977 1.41662 1.44731 1.52558 1.74031 2.41469 2.52234 3.11868 3.39888 3.68179 3.72155 3.74285 3.99576 3.99734 4.04850 4.23501 4.29514 4.35782 4.41100 4.41836 4.50735 4.68823 4.75560 4.79443 4.87598 4.99289 5.07433 5.19505 5.38232 5.40986 5.51563 5.63382 5.72412 5.79747 6.18751 6.62661 6.82201 7.35954 8.89837 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.035398 B = 0.001616 C = 0.001549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.822335 B =17322.926329 C =18077.396852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.025 3.975 10 C -0.095 4.095 11 C 0.078 3.922 12 O -0.356 6.356 13 C 0.464 3.536 14 O -0.541 6.541 15 C -0.090 4.090 16 C -0.102 4.102 17 S -0.081 6.081 18 C -0.099 4.099 19 C -0.136 4.136 20 C -0.097 4.097 21 C -0.109 4.109 22 C -0.097 4.097 23 C -0.040 4.040 24 Cl -0.061 7.061 25 H 0.264 0.736 26 H -0.003 1.003 27 H -0.003 1.003 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.136 0.864 37 H 0.154 0.846 38 H 0.165 0.835 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.557 -33.926 0.006 34.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.793 3.207 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.583 4.583 8 H 0.083 0.917 9 C -0.012 4.012 10 C -0.133 4.133 11 C 0.005 3.995 12 O -0.272 6.272 13 C 0.307 3.693 14 O -0.431 6.431 15 C -0.128 4.128 16 C -0.251 4.251 17 S 0.164 5.836 18 C -0.213 4.213 19 C -0.159 4.159 20 C -0.117 4.117 21 C -0.130 4.130 22 C -0.117 4.117 23 C -0.074 4.074 24 Cl -0.032 7.032 25 H 0.073 0.927 26 H 0.015 0.985 27 H 0.015 0.985 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.155 0.845 33 H 0.155 0.845 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.153 0.847 37 H 0.172 0.828 38 H 0.182 0.818 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 5.470 -33.722 0.006 34.163 hybrid contribution -1.420 1.133 -0.001 1.816 sum 4.050 -32.589 0.005 32.840 Atomic orbital electron populations 1.70092 1.07852 1.27974 1.51354 1.26007 0.95799 1.03505 0.94586 0.85444 0.78198 0.77804 0.79270 1.19078 1.20945 1.19068 1.21608 0.93769 0.91906 1.51011 0.91658 1.18939 0.94294 0.92500 0.95477 1.21466 0.98744 0.90452 1.02610 1.23141 0.90905 0.83586 1.01910 1.86479 1.42010 1.15463 1.83297 1.24093 0.88656 0.85117 0.71418 1.90665 1.18474 1.87047 1.46899 1.21048 0.96913 0.85538 1.09319 1.23467 1.00411 0.93801 1.07382 1.85638 1.10656 0.95460 1.91816 1.21807 0.97498 0.95758 1.06253 1.21427 0.90877 1.01268 1.02374 1.21550 1.01127 0.92178 0.96841 1.21567 0.94711 0.98056 0.98642 1.21346 0.93086 0.98531 0.98713 1.20635 0.85694 0.93188 1.07835 1.98378 1.12113 1.95889 1.96823 0.92693 0.98472 0.98465 0.91441 0.91430 0.91810 0.91819 0.84482 0.84475 0.88450 0.88455 0.84650 0.82812 0.81772 0.82590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.46 13.29 21.45 0.28 -56.18 16 2 C 0.00 -0.06 5.46 84.66 0.46 0.41 16 3 Si 0.97 43.75 29.54 68.60 2.03 45.78 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 7 C -0.55 -30.65 9.11 25.60 0.23 -30.42 16 8 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.03 1.31 4.97 29.85 0.15 1.46 16 10 C -0.10 -3.86 5.53 30.60 0.17 -3.69 16 11 C 0.08 2.79 5.47 71.98 0.39 3.19 16 12 O -0.36 -10.84 10.22 -51.39 -0.53 -11.37 16 13 C 0.46 12.20 7.96 71.24 0.57 12.76 16 14 O -0.54 -17.38 15.73 21.96 0.35 -17.03 16 15 C -0.09 -1.48 5.82 29.85 0.17 -1.30 16 16 C -0.10 -1.69 3.62 71.98 0.26 -1.43 16 17 S -0.08 -1.40 20.83 -56.49 -1.18 -2.57 16 18 C -0.10 -1.75 6.11 22.63 0.14 -1.61 16 19 C -0.14 -2.09 9.36 22.40 0.21 -1.88 16 20 C -0.10 -1.10 10.04 22.25 0.22 -0.88 16 21 C -0.11 -1.01 10.04 22.30 0.22 -0.79 16 22 C -0.10 -1.15 9.82 22.27 0.22 -0.93 16 23 C -0.04 -0.67 6.34 22.45 0.14 -0.53 16 24 Cl -0.06 -1.03 27.84 -2.72 -0.08 -1.10 16 25 H 0.26 15.06 8.31 -92.71 -0.77 14.28 16 26 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 27 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 28 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 29 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 30 H 0.06 2.32 8.13 -2.39 -0.02 2.30 16 31 H 0.06 2.31 8.13 -2.39 -0.02 2.30 16 32 H 0.14 1.76 8.14 -2.38 -0.02 1.74 16 33 H 0.14 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.10 1.67 7.70 -2.39 -0.02 1.65 16 35 H 0.10 1.67 7.71 -2.39 -0.02 1.65 16 36 H 0.14 2.01 5.88 -2.91 -0.02 2.00 16 37 H 0.15 1.03 8.06 -2.91 -0.02 1.01 16 38 H 0.16 0.50 8.06 -2.91 -0.02 0.48 16 39 H 0.16 1.17 8.06 -2.91 -0.02 1.14 16 Total: -1.00 -68.47 365.06 5.49 -62.98 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: 1.05 Total: 5.15 kcal Atomic # 6 Polarization: -29.21 SS G_CDS: 3.56 Total: -25.65 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: 0.28 Total: -56.18 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -0.18 Total: -28.40 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: -1.40 SS G_CDS: -1.18 Total: -2.57 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -0.08 Total: -1.10 kcal Total: -68.47 5.49 -62.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912957531.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.243 kcal (2) G-P(sol) polarization free energy of solvation -68.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds