Wall clock time and date at job start Tue Mar 31 2020 15:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47430 * 2 1 4 4 S 1.81392 * 109.47164 * 120.00322 * 2 1 3 5 5 C 1.76201 * 103.00095 * 292.58966 * 4 2 1 6 6 C 1.38959 * 120.06552 * 95.21428 * 5 4 2 7 7 C 1.38081 * 119.93342 * 179.97438 * 6 5 4 8 8 C 1.38403 * 120.06670 * 0.02562 * 7 6 5 9 9 Cl 1.73601 * 119.93300 * 179.97438 * 8 7 6 10 10 C 1.38396 * 120.13171 * 0.23024 * 8 7 6 11 11 C 1.38090 * 120.06686 * 359.48948 * 10 8 7 12 12 C 1.50705 * 109.46799 * 240.00265 * 2 1 3 13 13 O 1.20825 * 120.00119 * 264.99961 * 12 2 1 14 14 O 1.34232 * 119.99709 * 85.00360 * 12 2 1 15 15 C 1.45199 * 116.99622 * 179.97438 * 14 12 2 16 16 C 1.53002 * 109.47414 * 179.97438 * 15 14 12 17 17 C 1.52992 * 109.47491 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.47183 * 179.97438 * 17 16 15 19 19 H 1.07995 * 120.00106 * 0.02562 * 18 17 16 20 20 C 1.37881 * 119.99965 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99994 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00037 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47183 * 59.99555 * 22 20 18 24 24 H 1.48493 * 109.47217 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47178 * 300.00036 * 22 20 18 26 26 H 1.08999 * 109.47659 * 185.93083 * 1 2 3 27 27 H 1.09002 * 109.46901 * 305.93197 * 1 2 3 28 28 H 1.09002 * 109.47068 * 65.92749 * 1 2 3 29 29 H 1.08000 * 120.03236 * 0.02562 * 6 5 4 30 30 H 1.08000 * 119.97271 * 180.02562 * 7 6 5 31 31 H 1.08003 * 119.96509 * 179.74798 * 10 8 7 32 32 H 1.08004 * 120.02698 * 180.25085 * 11 10 8 33 33 H 1.09008 * 109.47393 * 299.99763 * 15 14 12 34 34 H 1.09008 * 109.47550 * 59.99581 * 15 14 12 35 35 H 1.09001 * 109.46420 * 300.00301 * 16 15 14 36 36 H 1.08998 * 109.46944 * 59.99204 * 16 15 14 37 37 H 1.09004 * 109.46913 * 299.99969 * 17 16 15 38 38 H 1.09004 * 109.46979 * 59.99816 * 17 16 15 39 39 H 0.96999 * 119.99774 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1346 -0.8552 1.4810 5 6 1.6450 0.2207 2.7877 6 6 0.4534 -0.0052 3.4660 7 6 0.0726 0.8394 4.4898 8 6 0.8761 1.9103 4.8404 9 17 0.3937 2.9704 6.1278 10 6 2.0608 2.1410 4.1632 11 6 2.4498 1.2965 3.1422 12 6 2.0322 -0.7104 -1.2306 13 8 2.3196 -1.8827 -1.1764 14 8 2.1604 -0.0406 -2.3868 15 6 2.6505 -0.7885 -3.5308 16 6 2.7286 0.1349 -4.7483 17 6 3.2456 -0.6529 -5.9536 18 6 3.3219 0.2565 -7.1529 19 1 3.0312 1.2928 -7.0641 20 6 3.7629 -0.2346 -8.3635 21 7 4.1174 -1.4964 -8.4714 22 14 3.8582 0.8928 -9.8498 23 1 4.7842 2.0170 -9.5599 24 1 4.3599 0.1281 -11.0197 25 1 2.5069 1.4298 -10.1513 26 1 -0.3634 -1.0221 0.1062 27 1 -0.3633 0.6031 0.8321 28 1 -0.3633 0.4192 -0.9383 29 1 -0.1738 -0.8410 3.1931 30 1 -0.8532 0.6641 5.0177 31 1 2.6838 2.9799 4.4363 32 1 3.3765 1.4747 2.6169 33 1 3.6422 -1.1830 -3.3094 34 1 1.9706 -1.6135 -3.7440 35 1 1.7367 0.5290 -4.9695 36 1 3.4082 0.9601 -4.5354 37 1 4.2375 -1.0466 -5.7320 38 1 2.5663 -1.4783 -6.1666 39 1 4.4280 -1.8418 -9.3230 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914622524.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:36 Heat of formation + Delta-G solvation = -84.715380 kcal Electronic energy + Delta-G solvation = -21502.814025 eV Core-core repulsion = 17948.074373 eV Total energy + Delta-G solvation = -3554.739652 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.37717 -39.67006 -37.01346 -36.62909 -34.11363 -33.56748 -31.73290 -31.67634 -31.20078 -27.27675 -25.27249 -23.47663 -23.36581 -23.13601 -20.95933 -20.35710 -18.53268 -17.69999 -17.14974 -16.56109 -16.37477 -16.01713 -15.86002 -15.36825 -14.65745 -14.48244 -14.42695 -14.13488 -14.10760 -13.52349 -13.36610 -12.91156 -12.44556 -12.24599 -12.22313 -12.18699 -12.06468 -11.91924 -11.78870 -11.40375 -10.97812 -10.73042 -10.68948 -10.56806 -10.45027 -10.42654 -9.76853 -9.66215 -9.54553 -9.22549 -9.18639 -8.40415 -8.13574 -6.05251 -4.08597 0.11883 0.69146 1.08972 1.53082 2.01906 2.23903 2.77108 3.00573 3.31068 3.35627 3.37966 4.17347 4.28557 4.40291 4.42717 4.55861 4.69512 4.73807 4.75761 4.95283 5.20478 5.30554 5.32706 5.33417 5.40887 5.52029 5.55553 5.59127 5.69171 5.70787 5.95195 6.07888 6.38382 6.49053 6.76089 6.93551 7.57252 7.68090 7.75669 7.92529 8.33294 8.97263 9.55699 11.06052 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.028658 B = 0.001756 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.811381 B =15939.223068 C =16457.019020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.083 4.083 3 H 0.121 0.879 4 S -0.071 6.071 5 C -0.129 4.129 6 C -0.053 4.053 7 C -0.121 4.121 8 C -0.010 4.010 9 Cl -0.064 7.064 10 C -0.119 4.119 11 C -0.057 4.057 12 C 0.479 3.521 13 O -0.491 6.491 14 O -0.351 6.351 15 C 0.068 3.932 16 C -0.109 4.109 17 C 0.024 3.976 18 C -0.523 4.523 19 H 0.057 0.943 20 C 0.057 3.943 21 N -0.894 5.894 22 Si 0.896 3.104 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.276 1.276 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.144 0.856 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.020 0.980 38 H 0.020 0.980 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.669 6.683 29.842 31.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.211 4.211 3 H 0.139 0.861 4 S 0.163 5.837 5 C -0.241 4.241 6 C -0.074 4.074 7 C -0.141 4.141 8 C -0.037 4.037 9 Cl -0.035 7.035 10 C -0.140 4.140 11 C -0.078 4.078 12 C 0.319 3.681 13 O -0.379 6.379 14 O -0.268 6.268 15 C -0.005 4.005 16 C -0.146 4.146 17 C -0.013 4.013 18 C -0.561 4.561 19 H 0.075 0.925 20 C -0.144 4.144 21 N -0.533 5.533 22 Si 0.724 3.276 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.202 1.202 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.098 0.902 29 H 0.162 0.838 30 H 0.158 0.842 31 H 0.158 0.842 32 H 0.161 0.839 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.966 5.270 29.800 31.294 hybrid contribution -0.515 1.772 -0.776 2.002 sum -8.481 7.042 29.025 31.047 Atomic orbital electron populations 1.22034 0.89835 1.04296 1.04008 1.23163 1.01476 1.03799 0.92699 0.86111 1.86253 1.75422 1.28045 0.93990 1.22027 0.98604 1.00891 1.02585 1.21632 0.94459 0.97902 0.93393 1.21154 1.00368 0.94186 0.98403 1.21174 0.96168 0.93766 0.92622 1.98398 1.91512 1.64897 1.48733 1.21158 0.95665 1.00829 0.96333 1.21688 0.98880 0.92056 0.95175 1.22378 0.75287 0.85830 0.84639 1.90706 1.45325 1.16669 1.85160 1.86486 1.76805 1.44644 1.18826 1.23604 0.99151 0.95448 0.82260 1.21780 1.01959 0.98493 0.92405 1.19052 0.96531 0.95445 0.90274 1.21122 1.44291 0.96455 0.94268 0.92477 1.25031 0.95277 0.95130 0.99008 1.69954 1.44177 1.13532 1.25599 0.86598 0.78460 0.80616 0.81973 1.20186 1.21244 1.20188 0.90347 0.90840 0.90248 0.83819 0.84241 0.84224 0.83894 0.91237 0.91278 0.92091 0.92080 0.96172 0.96187 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.04 37.16 0.34 -0.89 16 2 C -0.08 -0.88 3.24 -27.88 -0.09 -0.97 16 3 H 0.12 1.10 8.14 -51.92 -0.42 0.68 16 4 S -0.07 -0.75 20.39 -107.50 -2.19 -2.94 16 5 C -0.13 -1.06 5.32 -39.05 -0.21 -1.27 16 6 C -0.05 -0.36 9.46 -39.37 -0.37 -0.74 16 7 C -0.12 -0.75 9.82 -39.58 -0.39 -1.14 16 8 C -0.01 -0.07 6.32 -39.46 -0.25 -0.32 16 9 Cl -0.06 -0.42 28.95 -51.86 -1.50 -1.92 16 10 C -0.12 -0.78 9.82 -39.58 -0.39 -1.17 16 11 C -0.06 -0.41 9.79 -39.37 -0.39 -0.80 16 12 C 0.48 7.10 7.08 36.01 0.25 7.35 16 13 O -0.49 -8.67 15.89 -18.75 -0.30 -8.97 16 14 O -0.35 -5.67 10.22 -39.26 -0.40 -6.07 16 15 C 0.07 1.23 5.47 37.16 0.20 1.44 16 16 C -0.11 -2.21 5.53 -26.73 -0.15 -2.36 16 17 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 18 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 19 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -26.62 13.29 55.43 0.74 -25.89 16 22 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 26 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.50 7.57 -51.93 -0.39 0.11 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 30 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 31 H 0.14 0.68 8.06 -52.48 -0.42 0.26 16 32 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 33 H 0.07 1.27 8.14 -51.92 -0.42 0.85 16 34 H 0.07 1.25 8.13 -51.92 -0.42 0.83 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 369.14 15.07 5.56 5.56 Total: -1.00 -31.40 369.14 -10.53 -41.93 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: -5.43 Total: -4.30 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: -1.99 Total: -13.79 kcal Atomic # 7 Polarization: -26.62 SS G_CDS: 0.74 Total: -25.89 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.70 Total: -15.05 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -0.75 SS G_CDS: -2.19 Total: -2.94 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -1.50 Total: -1.92 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.40 -10.53 -41.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914622524.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.782 kcal (2) G-P(sol) polarization free energy of solvation -31.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds