Wall clock time and date at job start Tue Mar 31 2020 15:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47430 * 2 1 4 4 S 1.81392 * 109.47164 * 120.00322 * 2 1 3 5 5 C 1.76201 * 103.00095 * 292.58966 * 4 2 1 6 6 C 1.38959 * 120.06552 * 95.21428 * 5 4 2 7 7 C 1.38081 * 119.93342 * 179.97438 * 6 5 4 8 8 C 1.38403 * 120.06670 * 0.02562 * 7 6 5 9 9 Cl 1.73601 * 119.93300 * 179.97438 * 8 7 6 10 10 C 1.38396 * 120.13171 * 0.23024 * 8 7 6 11 11 C 1.38090 * 120.06686 * 359.48948 * 10 8 7 12 12 C 1.50705 * 109.46799 * 240.00265 * 2 1 3 13 13 O 1.20825 * 120.00119 * 264.99961 * 12 2 1 14 14 O 1.34232 * 119.99709 * 85.00360 * 12 2 1 15 15 C 1.45199 * 116.99622 * 179.97438 * 14 12 2 16 16 C 1.53002 * 109.47414 * 179.97438 * 15 14 12 17 17 C 1.52992 * 109.47491 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.47183 * 179.97438 * 17 16 15 19 19 H 1.07995 * 120.00106 * 0.02562 * 18 17 16 20 20 C 1.37881 * 119.99965 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99994 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00037 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47183 * 59.99555 * 22 20 18 24 24 H 1.48493 * 109.47217 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47178 * 300.00036 * 22 20 18 26 26 H 1.08999 * 109.47659 * 185.93083 * 1 2 3 27 27 H 1.09002 * 109.46901 * 305.93197 * 1 2 3 28 28 H 1.09002 * 109.47068 * 65.92749 * 1 2 3 29 29 H 1.08000 * 120.03236 * 0.02562 * 6 5 4 30 30 H 1.08000 * 119.97271 * 180.02562 * 7 6 5 31 31 H 1.08003 * 119.96509 * 179.74798 * 10 8 7 32 32 H 1.08004 * 120.02698 * 180.25085 * 11 10 8 33 33 H 1.09008 * 109.47393 * 299.99763 * 15 14 12 34 34 H 1.09008 * 109.47550 * 59.99581 * 15 14 12 35 35 H 1.09001 * 109.46420 * 300.00301 * 16 15 14 36 36 H 1.08998 * 109.46944 * 59.99204 * 16 15 14 37 37 H 1.09004 * 109.46913 * 299.99969 * 17 16 15 38 38 H 1.09004 * 109.46979 * 59.99816 * 17 16 15 39 39 H 0.96999 * 119.99774 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1346 -0.8552 1.4810 5 6 1.6450 0.2207 2.7877 6 6 0.4534 -0.0052 3.4660 7 6 0.0726 0.8394 4.4898 8 6 0.8761 1.9103 4.8404 9 17 0.3937 2.9704 6.1278 10 6 2.0608 2.1410 4.1632 11 6 2.4498 1.2965 3.1422 12 6 2.0322 -0.7104 -1.2306 13 8 2.3196 -1.8827 -1.1764 14 8 2.1604 -0.0406 -2.3868 15 6 2.6505 -0.7885 -3.5308 16 6 2.7286 0.1349 -4.7483 17 6 3.2456 -0.6529 -5.9536 18 6 3.3219 0.2565 -7.1529 19 1 3.0312 1.2928 -7.0641 20 6 3.7629 -0.2346 -8.3635 21 7 4.1174 -1.4964 -8.4714 22 14 3.8582 0.8928 -9.8498 23 1 4.7842 2.0170 -9.5599 24 1 4.3599 0.1281 -11.0197 25 1 2.5069 1.4298 -10.1513 26 1 -0.3634 -1.0221 0.1062 27 1 -0.3633 0.6031 0.8321 28 1 -0.3633 0.4192 -0.9383 29 1 -0.1738 -0.8410 3.1931 30 1 -0.8532 0.6641 5.0177 31 1 2.6838 2.9799 4.4363 32 1 3.3765 1.4747 2.6169 33 1 3.6422 -1.1830 -3.3094 34 1 1.9706 -1.6135 -3.7440 35 1 1.7367 0.5290 -4.9695 36 1 3.4082 0.9601 -4.5354 37 1 4.2375 -1.0466 -5.7320 38 1 2.5663 -1.4783 -6.1666 39 1 4.4280 -1.8418 -9.3230 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914622524.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:36 Heat of formation + Delta-G solvation = -98.868759 kcal Electronic energy + Delta-G solvation = -21503.427761 eV Core-core repulsion = 17948.074373 eV Total energy + Delta-G solvation = -3555.353388 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.64840 -40.17984 -37.99352 -37.51570 -35.96420 -34.56247 -33.57330 -32.22040 -31.74501 -29.09508 -26.39677 -24.93666 -23.92714 -23.87874 -22.21448 -22.06999 -19.27404 -18.89211 -18.43293 -17.90337 -17.71371 -16.96472 -16.55411 -16.50941 -16.11505 -15.82201 -15.22491 -14.94622 -14.60527 -14.57698 -14.34922 -14.15223 -13.85952 -13.77651 -13.49396 -13.13969 -12.80601 -12.80155 -12.69497 -12.55615 -12.47470 -12.38532 -12.10386 -11.88932 -11.82479 -11.44599 -11.44448 -11.25805 -11.23410 -10.56574 -10.15127 -9.78638 -8.94665 -8.21466 -6.33137 -0.49986 0.20238 0.35317 0.96795 1.04078 1.38630 1.41813 1.44964 1.52681 1.61341 2.41510 2.47566 3.12351 3.41883 3.64997 3.70937 3.83759 3.89251 3.97755 4.02410 4.19434 4.24469 4.38319 4.49624 4.55666 4.63498 4.78215 4.83035 4.88442 4.90606 5.03855 5.06408 5.09744 5.20056 5.32935 5.49032 5.58542 5.63149 5.79866 6.18614 6.51626 6.82492 7.36329 8.90362 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.028658 B = 0.001756 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.811381 B =15939.223068 C =16457.019020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.074 4.074 3 H 0.139 0.861 4 S -0.106 6.106 5 C -0.134 4.134 6 C -0.054 4.054 7 C -0.119 4.119 8 C -0.016 4.016 9 Cl -0.063 7.063 10 C -0.120 4.120 11 C -0.062 4.062 12 C 0.477 3.523 13 O -0.523 6.523 14 O -0.349 6.349 15 C 0.078 3.922 16 C -0.093 4.093 17 C 0.025 3.975 18 C -0.544 4.544 19 H 0.066 0.934 20 C -0.001 4.001 21 N -0.933 5.933 22 Si 0.969 3.031 23 H -0.266 1.266 24 H -0.284 1.284 25 H -0.265 1.265 26 H 0.074 0.926 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.155 0.845 30 H 0.158 0.842 31 H 0.155 0.845 32 H 0.150 0.850 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.067 0.933 37 H -0.003 1.003 38 H -0.003 1.003 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.660 8.704 30.893 33.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.202 4.202 3 H 0.157 0.843 4 S 0.128 5.872 5 C -0.245 4.245 6 C -0.074 4.074 7 C -0.139 4.139 8 C -0.043 4.043 9 Cl -0.034 7.034 10 C -0.141 4.141 11 C -0.083 4.083 12 C 0.319 3.681 13 O -0.412 6.412 14 O -0.265 6.265 15 C 0.004 3.996 16 C -0.131 4.131 17 C -0.012 4.012 18 C -0.582 4.582 19 H 0.084 0.916 20 C -0.199 4.199 21 N -0.573 5.573 22 Si 0.793 3.207 23 H -0.191 1.191 24 H -0.210 1.210 25 H -0.190 1.190 26 H 0.093 0.907 27 H 0.114 0.886 28 H 0.099 0.901 29 H 0.173 0.827 30 H 0.176 0.824 31 H 0.172 0.828 32 H 0.168 0.832 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.015 0.985 38 H 0.016 0.984 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.968 7.306 30.870 32.966 hybrid contribution -0.217 1.132 -0.971 1.507 sum -9.185 8.439 29.899 32.396 Atomic orbital electron populations 1.22053 0.88020 1.04615 1.05032 1.23216 1.02701 1.03854 0.90418 0.84321 1.86413 1.76012 1.29532 0.95276 1.21918 0.99598 1.01017 1.02014 1.21765 0.94105 0.98273 0.93280 1.21352 1.00899 0.93611 0.98049 1.21338 0.96372 0.93945 0.92633 1.98402 1.91485 1.64863 1.48650 1.21323 0.95791 1.01047 0.95893 1.21795 0.99105 0.91882 0.95493 1.23219 0.74180 0.85705 0.84976 1.90695 1.46722 1.18228 1.85524 1.86469 1.76834 1.44322 1.18914 1.23217 0.98979 0.94782 0.82600 1.21463 1.02148 0.98092 0.91386 1.18940 0.94943 0.95137 0.92191 1.21592 1.44134 0.97188 0.95300 0.91604 1.26013 0.94752 0.96695 1.02465 1.70094 1.45114 1.15545 1.26504 0.85443 0.79013 0.78536 0.77715 1.19073 1.20990 1.19024 0.90701 0.88598 0.90079 0.82695 0.82435 0.82753 0.83227 0.91798 0.91629 0.91262 0.91385 0.98492 0.98420 0.92702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.04 71.98 0.65 -1.47 16 2 C -0.07 -1.48 3.24 29.85 0.10 -1.38 16 3 H 0.14 2.26 8.14 -2.39 -0.02 2.24 16 4 S -0.11 -2.17 20.39 -56.49 -1.15 -3.32 16 5 C -0.13 -1.98 5.32 22.61 0.12 -1.86 16 6 C -0.05 -0.62 9.46 22.41 0.21 -0.41 16 7 C -0.12 -1.20 9.82 22.27 0.22 -0.98 16 8 C -0.02 -0.18 6.32 22.35 0.14 -0.04 16 9 Cl -0.06 -0.71 28.95 -2.72 -0.08 -0.79 16 10 C -0.12 -1.32 9.82 22.27 0.22 -1.10 16 11 C -0.06 -0.79 9.79 22.41 0.22 -0.57 16 12 C 0.48 13.95 7.08 71.24 0.50 14.45 16 13 O -0.52 -18.66 15.89 21.97 0.35 -18.31 16 14 O -0.35 -11.05 10.22 -51.44 -0.53 -11.57 16 15 C 0.08 2.83 5.47 71.98 0.39 3.23 16 16 C -0.09 -3.79 5.53 30.59 0.17 -3.62 16 17 C 0.03 1.31 4.97 29.84 0.15 1.46 16 18 C -0.54 -30.53 9.11 25.60 0.23 -30.29 16 19 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 20 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 21 N -0.93 -56.51 13.29 21.45 0.28 -56.23 16 22 Si 0.97 43.67 29.54 68.60 2.03 45.70 16 23 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 24 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 25 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 26 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.10 1.05 7.57 -2.39 -0.02 1.04 16 28 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.16 1.40 8.06 -2.91 -0.02 1.37 16 30 H 0.16 0.97 8.06 -2.91 -0.02 0.95 16 31 H 0.15 1.18 8.06 -2.91 -0.02 1.15 16 32 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 33 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 34 H 0.07 2.42 8.13 -2.38 -0.02 2.40 16 35 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 36 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 37 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 38 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 39 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -67.60 369.14 5.73 -61.87 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: 1.04 Total: 4.86 kcal Atomic # 6 Polarization: -25.99 SS G_CDS: 3.79 Total: -22.20 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: 0.28 Total: -56.23 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -0.18 Total: -29.88 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: -2.17 SS G_CDS: -1.15 Total: -3.32 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -0.08 Total: -0.79 kcal Total: -67.60 5.73 -61.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914622524.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.003 kcal (2) G-P(sol) polarization free energy of solvation -67.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds