Wall clock time and date at job start Tue Mar 31 2020 15:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47110 * 2 1 4 4 S 1.81398 * 109.47248 * 240.00199 * 2 1 3 5 5 C 1.76203 * 103.00010 * 67.34147 * 4 2 1 6 6 C 1.38954 * 120.06384 * 84.24688 * 5 4 2 7 7 C 1.38086 * 119.92772 * 180.25265 * 6 5 4 8 8 C 1.38405 * 120.06999 * 359.47035 * 7 6 5 9 9 Cl 1.73591 * 119.93483 * 180.29756 * 8 7 6 10 10 C 1.38397 * 120.12698 * 0.27657 * 8 7 6 11 11 C 1.38083 * 120.07409 * 359.97438 * 10 8 7 12 12 C 1.50703 * 109.47240 * 119.99901 * 2 1 3 13 13 O 1.20828 * 119.99636 * 99.99955 * 12 2 1 14 14 O 1.34226 * 120.00264 * 280.00502 * 12 2 1 15 15 C 1.45194 * 117.00171 * 180.02562 * 14 12 2 16 16 C 1.53002 * 109.47112 * 179.97438 * 15 14 12 17 17 C 1.53001 * 109.47023 * 179.97438 * 16 15 14 18 18 C 1.50695 * 109.47270 * 180.02562 * 17 16 15 19 19 H 1.08006 * 120.00060 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00533 * 180.02562 * 18 17 16 21 21 N 1.31519 * 119.99763 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00238 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47285 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.46850 * 119.99802 * 22 20 18 25 25 H 1.48498 * 109.47044 * 239.99680 * 22 20 18 26 26 H 1.09007 * 109.47090 * 181.47449 * 1 2 3 27 27 H 1.09001 * 109.47497 * 301.46744 * 1 2 3 28 28 H 1.08994 * 109.47264 * 61.47552 * 1 2 3 29 29 H 1.07993 * 120.03815 * 359.97438 * 6 5 4 30 30 H 1.08000 * 119.96739 * 179.74432 * 7 6 5 31 31 H 1.08009 * 119.96233 * 179.97438 * 10 8 7 32 32 H 1.07997 * 120.03484 * 180.02562 * 11 10 8 33 33 H 1.09004 * 109.46773 * 299.99303 * 15 14 12 34 34 H 1.09004 * 109.47274 * 59.99478 * 15 14 12 35 35 H 1.08992 * 109.47393 * 299.99522 * 16 15 14 36 36 H 1.08996 * 109.46905 * 60.00042 * 16 15 14 37 37 H 1.08999 * 109.47660 * 300.00512 * 17 16 15 38 38 H 1.09004 * 109.46896 * 60.00171 * 17 16 15 39 39 H 0.96996 * 120.00222 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 16 2.1347 -0.8551 -1.4811 5 6 1.6432 0.2200 -2.7878 6 6 2.4411 1.3032 -3.1354 7 6 2.0507 2.1469 -4.1564 8 6 0.8715 1.9082 -4.8407 9 17 0.3880 2.9667 -6.1288 10 6 0.0775 0.8271 -4.5002 11 6 0.4599 -0.0172 -3.4767 12 6 2.0324 -0.7104 1.2305 13 8 2.4050 -1.8573 1.1560 14 8 2.0657 -0.0691 2.4091 15 6 2.5620 -0.8150 3.5517 16 6 2.5259 0.0744 4.7961 17 6 3.0483 -0.7119 6.0002 18 6 3.0122 0.1638 7.2261 19 1 2.6522 1.1795 7.1537 20 6 3.4387 -0.3315 8.4401 21 7 3.8776 -1.5681 8.5281 22 14 3.3945 0.7543 9.9594 23 1 2.8642 2.0929 9.5960 24 1 2.5167 0.1353 10.9848 25 1 4.7681 0.8981 10.5052 26 1 -0.3634 -1.0274 0.0264 27 1 -0.3634 0.5364 0.8765 28 1 -0.3633 0.4907 -0.9029 29 1 3.3633 1.4877 -2.6046 30 1 2.6683 2.9915 -4.4243 31 1 -0.8424 0.6435 -5.0356 32 1 -0.1600 -0.8610 -3.2118 33 1 1.9351 -1.6920 3.7131 34 1 3.5876 -1.1315 3.3613 35 1 3.1530 0.9511 4.6345 36 1 1.5005 0.3911 4.9866 37 1 2.4210 -1.5885 6.1617 38 1 4.0737 -1.0290 5.8099 39 1 4.1773 -1.9168 9.3822 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914622525.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:39 Heat of formation + Delta-G solvation = -84.725378 kcal Electronic energy + Delta-G solvation = -21502.697818 eV Core-core repulsion = 17947.957733 eV Total energy + Delta-G solvation = -3554.740085 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.37923 -39.67033 -37.01395 -36.62735 -34.12336 -33.57375 -31.73343 -31.67704 -31.19914 -27.27144 -25.26680 -23.48149 -23.36390 -23.14422 -20.96450 -20.36219 -18.53381 -17.68873 -17.14841 -16.57791 -16.36617 -16.01528 -15.86915 -15.36695 -14.66403 -14.48060 -14.42750 -14.13606 -14.09922 -13.52608 -13.35876 -12.91738 -12.44706 -12.23540 -12.22461 -12.19269 -12.05758 -11.93136 -11.78854 -11.40357 -11.01311 -10.69770 -10.68942 -10.54614 -10.46226 -10.42353 -9.77492 -9.66145 -9.55384 -9.21820 -9.16974 -8.41423 -8.13084 -6.05886 -4.09065 0.12168 0.69128 1.09674 1.53213 2.03448 2.21713 2.77266 3.00549 3.28447 3.36001 3.40095 4.17351 4.28568 4.40193 4.43037 4.55601 4.69537 4.73366 4.75436 4.95311 5.20817 5.30171 5.33323 5.33673 5.40981 5.51930 5.55413 5.59157 5.69293 5.71077 5.95037 6.07937 6.38283 6.48921 6.75902 6.93382 7.57378 7.67767 7.75414 7.92259 8.32970 8.97335 9.55435 11.05531 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.029296 B = 0.001750 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.525264 B =16000.341324 C =16497.332123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.083 4.083 3 H 0.121 0.879 4 S -0.069 6.069 5 C -0.130 4.130 6 C -0.057 4.057 7 C -0.119 4.119 8 C -0.011 4.011 9 Cl -0.064 7.064 10 C -0.121 4.121 11 C -0.053 4.053 12 C 0.479 3.521 13 O -0.491 6.491 14 O -0.351 6.351 15 C 0.068 3.932 16 C -0.109 4.109 17 C 0.023 3.977 18 C -0.522 4.522 19 H 0.058 0.942 20 C 0.056 3.944 21 N -0.894 5.894 22 Si 0.895 3.105 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.284 1.284 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.143 0.857 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.144 0.856 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.020 0.980 38 H 0.020 0.980 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.028 6.893 -30.008 31.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.212 4.212 3 H 0.139 0.861 4 S 0.164 5.836 5 C -0.242 4.242 6 C -0.078 4.078 7 C -0.140 4.140 8 C -0.037 4.037 9 Cl -0.035 7.035 10 C -0.141 4.141 11 C -0.074 4.074 12 C 0.319 3.681 13 O -0.379 6.379 14 O -0.267 6.267 15 C -0.005 4.005 16 C -0.146 4.146 17 C -0.014 4.014 18 C -0.560 4.560 19 H 0.076 0.924 20 C -0.145 4.145 21 N -0.533 5.533 22 Si 0.723 3.277 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 H 0.095 0.905 27 H 0.098 0.902 28 H 0.091 0.909 29 H 0.161 0.839 30 H 0.158 0.842 31 H 0.158 0.842 32 H 0.162 0.838 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.299 5.496 -29.979 31.340 hybrid contribution -0.570 1.724 0.800 1.984 sum -7.869 7.220 -29.179 31.072 Atomic orbital electron populations 1.22021 0.89849 1.04353 1.03908 1.23174 1.01529 1.03782 0.92692 0.86073 1.86273 1.75245 1.28119 0.93916 1.22050 0.98704 1.00828 1.02594 1.21683 0.98816 0.92098 0.95223 1.21157 0.95678 1.00844 0.96298 1.21171 0.96234 0.93723 0.92618 1.98397 1.91462 1.65021 1.48656 1.21155 1.00416 0.94064 0.98465 1.21631 0.94430 0.97989 0.93366 1.22378 0.75604 0.85405 0.84748 1.90707 1.43442 1.17855 1.85858 1.86481 1.76545 1.46365 1.17344 1.23603 0.99146 0.95475 0.82234 1.21779 1.02070 0.98778 0.92005 1.19064 0.96559 0.95455 0.90300 1.21200 1.42924 0.98858 0.93003 0.92366 1.25036 0.95206 0.95108 0.99146 1.69975 1.43175 1.14713 1.25408 0.86487 0.77698 0.80667 0.82865 1.19682 1.20958 1.20962 0.90487 0.90156 0.90877 0.83912 0.84232 0.84241 0.83812 0.91272 0.91248 0.92075 0.92087 0.96174 0.96163 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.10 37.16 0.34 -0.89 16 2 C -0.08 -0.89 3.24 -27.88 -0.09 -0.98 16 3 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 4 S -0.07 -0.73 20.33 -107.50 -2.19 -2.92 16 5 C -0.13 -1.07 5.22 -39.05 -0.20 -1.27 16 6 C -0.06 -0.41 9.79 -39.37 -0.39 -0.80 16 7 C -0.12 -0.78 9.82 -39.58 -0.39 -1.17 16 8 C -0.01 -0.07 6.32 -39.46 -0.25 -0.32 16 9 Cl -0.06 -0.42 28.95 -51.86 -1.50 -1.92 16 10 C -0.12 -0.75 9.82 -39.58 -0.39 -1.14 16 11 C -0.05 -0.37 9.21 -39.37 -0.36 -0.73 16 12 C 0.48 7.08 7.13 36.01 0.26 7.34 16 13 O -0.49 -8.67 15.79 -18.75 -0.30 -8.97 16 14 O -0.35 -5.65 10.22 -39.25 -0.40 -6.05 16 15 C 0.07 1.23 5.47 37.16 0.20 1.44 16 16 C -0.11 -2.21 5.53 -26.73 -0.15 -2.36 16 17 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 18 C -0.52 -14.56 9.11 -34.44 -0.31 -14.88 16 19 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 20 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 21 N -0.89 -26.62 13.29 55.43 0.74 -25.89 16 22 Si 0.90 21.41 29.54 -169.99 -5.02 16.38 16 23 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 26 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.50 7.13 -51.93 -0.37 0.13 16 29 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 30 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 31 H 0.14 0.62 8.06 -52.48 -0.42 0.20 16 32 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 33 H 0.07 1.25 8.13 -51.93 -0.42 0.83 16 34 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 368.32 15.07 5.55 5.55 Total: -1.00 -31.46 368.32 -10.49 -41.95 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: -5.41 Total: -4.35 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: -1.97 Total: -13.78 kcal Atomic # 7 Polarization: -26.62 SS G_CDS: 0.74 Total: -25.89 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -0.70 Total: -15.02 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -0.73 SS G_CDS: -2.19 Total: -2.92 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -1.50 Total: -1.92 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.46 -10.49 -41.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914622525.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.776 kcal (2) G-P(sol) polarization free energy of solvation -31.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds