Wall clock time and date at job start Tue Mar 31 2020 15:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47110 * 2 1 4 4 S 1.81398 * 109.47248 * 240.00199 * 2 1 3 5 5 C 1.76203 * 103.00010 * 67.34147 * 4 2 1 6 6 C 1.38954 * 120.06384 * 84.24688 * 5 4 2 7 7 C 1.38086 * 119.92772 * 180.25265 * 6 5 4 8 8 C 1.38405 * 120.06999 * 359.47035 * 7 6 5 9 9 Cl 1.73591 * 119.93483 * 180.29756 * 8 7 6 10 10 C 1.38397 * 120.12698 * 0.27657 * 8 7 6 11 11 C 1.38083 * 120.07409 * 359.97438 * 10 8 7 12 12 C 1.50703 * 109.47240 * 119.99901 * 2 1 3 13 13 O 1.20828 * 119.99636 * 99.99955 * 12 2 1 14 14 O 1.34226 * 120.00264 * 280.00502 * 12 2 1 15 15 C 1.45194 * 117.00171 * 180.02562 * 14 12 2 16 16 C 1.53002 * 109.47112 * 179.97438 * 15 14 12 17 17 C 1.53001 * 109.47023 * 179.97438 * 16 15 14 18 18 C 1.50695 * 109.47270 * 180.02562 * 17 16 15 19 19 H 1.08006 * 120.00060 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00533 * 180.02562 * 18 17 16 21 21 N 1.31519 * 119.99763 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00238 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47285 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.46850 * 119.99802 * 22 20 18 25 25 H 1.48498 * 109.47044 * 239.99680 * 22 20 18 26 26 H 1.09007 * 109.47090 * 181.47449 * 1 2 3 27 27 H 1.09001 * 109.47497 * 301.46744 * 1 2 3 28 28 H 1.08994 * 109.47264 * 61.47552 * 1 2 3 29 29 H 1.07993 * 120.03815 * 359.97438 * 6 5 4 30 30 H 1.08000 * 119.96739 * 179.74432 * 7 6 5 31 31 H 1.08009 * 119.96233 * 179.97438 * 10 8 7 32 32 H 1.07997 * 120.03484 * 180.02562 * 11 10 8 33 33 H 1.09004 * 109.46773 * 299.99303 * 15 14 12 34 34 H 1.09004 * 109.47274 * 59.99478 * 15 14 12 35 35 H 1.08992 * 109.47393 * 299.99522 * 16 15 14 36 36 H 1.08996 * 109.46905 * 60.00042 * 16 15 14 37 37 H 1.08999 * 109.47660 * 300.00512 * 17 16 15 38 38 H 1.09004 * 109.46896 * 60.00171 * 17 16 15 39 39 H 0.96996 * 120.00222 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 16 2.1347 -0.8551 -1.4811 5 6 1.6432 0.2200 -2.7878 6 6 2.4411 1.3032 -3.1354 7 6 2.0507 2.1469 -4.1564 8 6 0.8715 1.9082 -4.8407 9 17 0.3880 2.9667 -6.1288 10 6 0.0775 0.8271 -4.5002 11 6 0.4599 -0.0172 -3.4767 12 6 2.0324 -0.7104 1.2305 13 8 2.4050 -1.8573 1.1560 14 8 2.0657 -0.0691 2.4091 15 6 2.5620 -0.8150 3.5517 16 6 2.5259 0.0744 4.7961 17 6 3.0483 -0.7119 6.0002 18 6 3.0122 0.1638 7.2261 19 1 2.6522 1.1795 7.1537 20 6 3.4387 -0.3315 8.4401 21 7 3.8776 -1.5681 8.5281 22 14 3.3945 0.7543 9.9594 23 1 2.8642 2.0929 9.5960 24 1 2.5167 0.1353 10.9848 25 1 4.7681 0.8981 10.5052 26 1 -0.3634 -1.0274 0.0264 27 1 -0.3634 0.5364 0.8765 28 1 -0.3633 0.4907 -0.9029 29 1 3.3633 1.4877 -2.6046 30 1 2.6683 2.9915 -4.4243 31 1 -0.8424 0.6435 -5.0356 32 1 -0.1600 -0.8610 -3.2118 33 1 1.9351 -1.6920 3.7131 34 1 3.5876 -1.1315 3.3613 35 1 3.1530 0.9511 4.6345 36 1 1.5005 0.3911 4.9866 37 1 2.4210 -1.5885 6.1617 38 1 4.0737 -1.0290 5.8099 39 1 4.1773 -1.9168 9.3822 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914622525.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:38 Heat of formation + Delta-G solvation = -98.957087 kcal Electronic energy + Delta-G solvation = -21503.314951 eV Core-core repulsion = 17947.957733 eV Total energy + Delta-G solvation = -3555.357219 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.64864 -40.18048 -37.99051 -37.51633 -35.96766 -34.57484 -33.57124 -32.22152 -31.74423 -29.09215 -26.38530 -24.95005 -23.92720 -23.87772 -22.21467 -22.07889 -19.26821 -18.89072 -18.43649 -17.88865 -17.73325 -16.96462 -16.55209 -16.50575 -16.10517 -15.83591 -15.22218 -14.95530 -14.60408 -14.57869 -14.34898 -14.15909 -13.85304 -13.77387 -13.49887 -13.14183 -12.85763 -12.78510 -12.69545 -12.53160 -12.48377 -12.35206 -12.11798 -11.88945 -11.82130 -11.44805 -11.44254 -11.23652 -11.22147 -10.58201 -10.15096 -9.78804 -8.94191 -8.22089 -6.33553 -0.49502 0.20176 0.36216 0.96805 1.03322 1.38592 1.41698 1.41844 1.55058 1.61706 2.41132 2.47511 3.11981 3.41941 3.64965 3.70955 3.83714 3.88923 3.97917 4.02539 4.19470 4.24491 4.38377 4.49614 4.56046 4.63746 4.78318 4.83104 4.88411 4.90605 5.04088 5.06428 5.09735 5.20018 5.33058 5.49289 5.58554 5.63082 5.79903 6.18428 6.51560 6.82619 7.36091 8.90232 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.029296 B = 0.001750 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.525264 B =16000.341324 C =16497.332123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.074 4.074 3 H 0.140 0.860 4 S -0.105 6.105 5 C -0.134 4.134 6 C -0.062 4.062 7 C -0.120 4.120 8 C -0.016 4.016 9 Cl -0.063 7.063 10 C -0.119 4.119 11 C -0.054 4.054 12 C 0.477 3.523 13 O -0.523 6.523 14 O -0.348 6.348 15 C 0.078 3.922 16 C -0.093 4.093 17 C 0.025 3.975 18 C -0.542 4.542 19 H 0.066 0.934 20 C -0.002 4.002 21 N -0.933 5.933 22 Si 0.969 3.031 23 H -0.260 1.260 24 H -0.279 1.279 25 H -0.279 1.279 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.150 0.850 30 H 0.155 0.845 31 H 0.158 0.842 32 H 0.155 0.845 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.069 0.931 37 H -0.002 1.002 38 H -0.003 1.003 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.091 8.877 -31.034 33.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.202 4.202 3 H 0.158 0.842 4 S 0.129 5.871 5 C -0.246 4.246 6 C -0.083 4.083 7 C -0.140 4.140 8 C -0.043 4.043 9 Cl -0.034 7.034 10 C -0.139 4.139 11 C -0.075 4.075 12 C 0.319 3.681 13 O -0.412 6.412 14 O -0.265 6.265 15 C 0.004 3.996 16 C -0.131 4.131 17 C -0.013 4.013 18 C -0.580 4.580 19 H 0.084 0.916 20 C -0.200 4.200 21 N -0.573 5.573 22 Si 0.793 3.207 23 H -0.183 1.183 24 H -0.204 1.204 25 H -0.205 1.205 26 H 0.090 0.910 27 H 0.102 0.898 28 H 0.113 0.887 29 H 0.168 0.832 30 H 0.172 0.828 31 H 0.176 0.824 32 H 0.173 0.827 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.016 0.984 38 H 0.015 0.985 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.372 7.495 -31.022 32.994 hybrid contribution -0.244 1.097 0.988 1.496 sum -8.616 8.592 -30.034 32.405 Atomic orbital electron populations 1.22038 0.88061 1.04421 1.05157 1.23225 1.02736 1.03858 0.90398 0.84225 1.86435 1.75849 1.29621 0.95224 1.21939 0.99701 1.00951 1.02020 1.21791 0.99041 0.91915 0.95544 1.21324 0.95790 1.01076 0.95851 1.21335 0.96435 0.93906 0.92632 1.98401 1.91436 1.64986 1.48571 1.21353 1.00930 0.93501 0.98123 1.21765 0.94081 0.98373 0.93254 1.23214 0.74531 0.85252 0.85078 1.90697 1.44868 1.19428 1.86195 1.86463 1.76538 1.46019 1.17461 1.23215 0.98956 0.94857 0.82541 1.21461 1.02230 0.98361 0.91031 1.18949 0.94987 0.95110 0.92226 1.21652 1.42782 0.99482 0.94086 0.91604 1.26013 0.94675 0.96517 1.02761 1.70106 1.44126 1.16655 1.26437 0.85337 0.77858 0.79054 0.78422 1.18331 1.20423 1.20470 0.90998 0.89765 0.88737 0.83230 0.82752 0.82440 0.82695 0.91643 0.91794 0.91368 0.91264 0.98405 0.98472 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.10 71.98 0.66 -1.47 16 2 C -0.07 -1.48 3.24 29.85 0.10 -1.38 16 3 H 0.14 2.26 8.14 -2.39 -0.02 2.24 16 4 S -0.10 -2.15 20.33 -56.49 -1.15 -3.30 16 5 C -0.13 -1.99 5.22 22.61 0.12 -1.87 16 6 C -0.06 -0.79 9.79 22.41 0.22 -0.57 16 7 C -0.12 -1.32 9.82 22.27 0.22 -1.10 16 8 C -0.02 -0.18 6.32 22.35 0.14 -0.04 16 9 Cl -0.06 -0.71 28.95 -2.72 -0.08 -0.79 16 10 C -0.12 -1.20 9.82 22.27 0.22 -0.98 16 11 C -0.05 -0.63 9.21 22.41 0.21 -0.42 16 12 C 0.48 13.92 7.13 71.24 0.51 14.43 16 13 O -0.52 -18.66 15.79 21.96 0.35 -18.32 16 14 O -0.35 -10.98 10.22 -51.37 -0.53 -11.51 16 15 C 0.08 2.83 5.47 71.98 0.39 3.22 16 16 C -0.09 -3.78 5.53 30.60 0.17 -3.61 16 17 C 0.02 1.28 4.97 29.85 0.15 1.42 16 18 C -0.54 -30.39 9.11 25.60 0.23 -30.16 16 19 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 20 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 21 N -0.93 -56.52 13.29 21.45 0.28 -56.23 16 22 Si 0.97 43.71 29.54 68.60 2.03 45.74 16 23 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 24 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 25 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 26 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 27 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.09 1.06 7.13 -2.39 -0.02 1.04 16 29 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 30 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 31 H 0.16 0.98 8.06 -2.91 -0.02 0.96 16 32 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 33 H 0.07 2.42 8.13 -2.38 -0.02 2.40 16 34 H 0.06 2.38 8.13 -2.38 -0.02 2.36 16 35 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 36 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 37 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 38 H 0.00 -0.17 8.14 -2.38 -0.02 -0.19 16 39 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -67.68 368.32 5.74 -61.94 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: 1.04 Total: 4.65 kcal Atomic # 6 Polarization: -25.97 SS G_CDS: 3.79 Total: -22.18 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: 0.28 Total: -56.23 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -0.18 Total: -29.83 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: -2.15 SS G_CDS: -1.15 Total: -3.30 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -0.08 Total: -0.79 kcal Total: -67.68 5.74 -61.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914622525.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.016 kcal (2) G-P(sol) polarization free energy of solvation -67.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds