Wall clock time and date at job start Tue Mar 31 2020 14:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86797 * 119.99718 * 2 1 4 4 H 1.48496 * 109.47303 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47198 * 299.99871 * 3 2 1 6 6 H 1.48495 * 109.47473 * 59.99727 * 3 2 1 7 7 C 1.38653 * 120.00469 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99813 * 179.97438 * 7 2 1 9 9 O 1.34831 * 119.99444 * 359.97438 * 7 2 1 10 10 C 1.35752 * 116.99456 * 174.59802 * 9 7 2 11 11 C 1.38960 * 120.03021 * 173.81668 * 10 9 7 12 12 C 1.38128 * 120.07262 * 179.74556 * 11 10 9 13 13 C 1.38189 * 120.14399 * 0.55416 * 12 11 10 14 14 C 1.38948 * 120.06438 * 359.70220 * 13 12 11 15 15 N 1.39830 * 120.04153 * 180.02562 * 14 13 12 16 16 C 1.34784 * 119.99765 * 326.27892 * 15 14 13 17 17 O 1.21735 * 119.99581 * 354.78217 * 16 15 14 18 18 C 1.46459 * 119.99988 * 174.78718 * 16 15 14 19 19 C 1.36128 * 125.71275 * 179.97438 * 18 16 15 20 20 C 1.42226 * 107.62860 * 179.97438 * 19 18 16 21 21 C 1.45585 * 140.78222 * 180.02562 * 20 19 18 22 22 C 1.31816 * 114.63662 * 179.97438 * 21 20 19 23 23 S 1.75356 * 111.24092 * 0.02562 * 22 21 20 24 24 C 1.38175 * 106.99150 * 0.02562 * 20 19 18 25 25 N 1.37468 * 108.17437 * 359.77235 * 24 20 19 26 26 H 0.97002 * 125.69300 * 180.22122 * 25 24 20 27 27 C 1.38726 * 120.03753 * 354.09488 * 10 9 7 28 28 H 0.96996 * 120.00325 * 0.02562 * 1 2 3 29 29 H 1.07998 * 119.96257 * 0.02562 * 11 10 9 30 30 H 1.08011 * 119.92837 * 180.27692 * 12 11 10 31 31 H 1.08002 * 119.96997 * 179.72217 * 13 12 11 32 32 H 0.96995 * 120.00010 * 146.27343 * 15 14 13 33 33 H 1.08001 * 126.18702 * 359.92713 * 19 18 16 34 34 H 1.08002 * 122.68204 * 359.97316 * 21 20 19 35 35 H 1.07995 * 124.38147 * 179.97438 * 22 21 20 36 36 H 1.08003 * 120.06366 * 359.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3465 -0.0006 5 1 1.8907 2.3965 -1.2126 6 1 1.8907 2.3965 1.2124 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2006 0.0001 9 8 1.3348 -2.3684 0.0016 10 6 2.0695 -3.5042 -0.1118 11 6 1.4556 -4.7448 0.0110 12 6 2.2014 -5.9011 -0.1094 13 6 3.5619 -5.8285 -0.3410 14 6 4.1827 -4.5911 -0.4595 15 7 5.5592 -4.5181 -0.6944 16 6 6.3828 -5.4458 -0.1673 17 8 5.9422 -6.2911 0.5898 18 6 7.8078 -5.4367 -0.5055 19 6 8.7400 -6.3138 -0.0422 20 6 9.9918 -5.9535 -0.6131 21 6 11.3885 -6.3644 -0.6201 22 6 12.1749 -5.6253 -1.3768 23 16 11.2764 -4.3408 -2.1627 24 6 9.7674 -4.8510 -1.4152 25 7 8.4299 -4.5396 -1.3516 26 1 7.9957 -3.8102 -1.8211 27 6 3.4349 -3.4276 -0.3447 28 1 -0.4850 0.8400 -0.0004 29 1 0.3933 -4.8049 0.1964 30 1 1.7211 -6.8642 -0.0180 31 1 4.1431 -6.7344 -0.4302 32 1 5.9213 -3.8000 -1.2366 33 1 8.5615 -7.1345 0.6369 34 1 11.7512 -7.2074 -0.0507 35 1 13.2356 -5.7890 -1.4967 36 1 3.9150 -2.4645 -0.4365 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915740997.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:17 Heat of formation + Delta-G solvation = 22.017783 kcal Electronic energy + Delta-G solvation = -23461.647026 eV Core-core repulsion = 19810.428178 eV Total energy + Delta-G solvation = -3651.218848 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.55365 -41.29977 -40.21598 -38.15644 -36.39190 -35.76855 -34.26032 -31.62722 -31.30408 -30.56206 -29.22538 -27.34025 -25.13711 -23.94759 -23.57650 -22.60565 -21.32703 -20.82212 -20.22590 -19.69853 -19.26126 -17.92954 -17.26323 -16.96131 -16.62201 -16.16687 -16.00562 -15.93236 -15.60780 -15.52233 -15.41763 -15.24730 -14.63431 -14.57816 -14.20954 -13.77471 -13.60069 -13.33017 -12.88213 -12.79554 -12.77798 -12.63073 -12.43511 -12.11186 -11.77045 -11.66552 -11.36365 -11.22276 -10.77014 -10.60361 -9.47115 -9.32226 -8.95250 -8.67588 -8.48877 -6.17738 -0.05773 0.04916 0.38590 0.52921 0.67412 1.05732 1.34259 1.42421 1.52023 1.72729 1.77213 2.03167 2.15435 2.22222 2.80280 3.13354 3.43739 3.46805 3.76336 3.97136 4.07356 4.27430 4.35075 4.40281 4.56881 4.59830 4.62278 4.75961 4.97814 5.04582 5.07971 5.17923 5.31972 5.37724 5.41425 5.60046 5.61236 5.63331 5.98835 6.04502 6.11200 6.27152 6.82535 6.95503 7.74495 8.74221 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014129 B = 0.002769 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.249659 B =10109.562628 C =11859.065686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.021 4.021 3 Si 1.018 2.982 4 H -0.250 1.250 5 H -0.267 1.267 6 H -0.271 1.271 7 C -0.413 4.413 8 H 0.102 0.898 9 O -0.224 6.224 10 C 0.134 3.866 11 C -0.209 4.209 12 C -0.050 4.050 13 C -0.198 4.198 14 C 0.184 3.816 15 N -0.658 5.658 16 C 0.591 3.409 17 O -0.535 6.535 18 C -0.020 4.020 19 C -0.070 4.070 20 C -0.181 4.181 21 C -0.086 4.086 22 C -0.211 4.211 23 S 0.157 5.843 24 C -0.018 4.018 25 N -0.519 5.519 26 H 0.432 0.568 27 C -0.258 4.258 28 H 0.273 0.727 29 H 0.122 0.878 30 H 0.157 0.843 31 H 0.132 0.868 32 H 0.417 0.583 33 H 0.161 0.839 34 H 0.166 0.834 35 H 0.203 0.797 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.693 -9.460 -5.551 27.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.219 4.219 3 Si 0.837 3.163 4 H -0.174 1.174 5 H -0.192 1.192 6 H -0.196 1.196 7 C -0.489 4.489 8 H 0.119 0.881 9 O -0.130 6.130 10 C 0.083 3.917 11 C -0.229 4.229 12 C -0.068 4.068 13 C -0.218 4.218 14 C 0.090 3.910 15 N -0.303 5.303 16 C 0.380 3.620 17 O -0.412 6.412 18 C -0.133 4.133 19 C -0.099 4.099 20 C -0.194 4.194 21 C -0.115 4.115 22 C -0.345 4.345 23 S 0.410 5.590 24 C -0.247 4.247 25 N -0.124 5.124 26 H 0.272 0.728 27 C -0.279 4.279 28 H 0.082 0.918 29 H 0.140 0.860 30 H 0.175 0.825 31 H 0.150 0.850 32 H 0.254 0.746 33 H 0.179 0.821 34 H 0.183 0.817 35 H 0.219 0.781 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 25.296 -8.672 -6.023 27.411 hybrid contribution -0.728 0.491 0.576 1.050 sum 24.568 -8.182 -5.446 26.461 Atomic orbital electron populations 1.70182 1.08020 1.28810 1.48575 1.26568 0.96823 1.02691 0.95803 0.84542 0.78279 0.74926 0.78540 1.17366 1.19243 1.19607 1.21807 0.92423 0.81344 1.53289 0.88109 1.83992 1.35483 1.12469 1.81105 1.19603 0.90714 0.88092 0.93299 1.20529 1.00822 0.89984 1.11536 1.20941 0.92818 0.97738 0.95299 1.20882 0.95053 0.96145 1.09730 1.17362 0.82165 0.93393 0.98050 1.43224 1.04891 1.30032 1.52140 1.17227 0.84187 0.81044 0.79522 1.90875 1.76246 1.38421 1.35638 1.19555 0.91588 0.98320 1.03886 1.20949 0.89210 0.99321 1.00384 1.19724 0.95265 0.99440 1.04930 1.20559 0.88763 1.01656 1.00562 1.25334 1.04935 0.99924 1.04290 1.84008 0.91105 1.33758 1.50136 1.24055 0.90383 1.03003 1.07307 1.41335 1.04692 1.27504 1.38857 0.72761 1.20821 0.94164 0.98015 1.14904 0.91776 0.86016 0.82519 0.84993 0.74558 0.82125 0.81666 0.78058 0.85290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.35 13.67 21.61 0.30 -55.05 16 2 C -0.02 -1.16 5.49 84.83 0.47 -0.70 16 3 Si 1.02 41.62 29.55 68.60 2.03 43.64 16 4 H -0.25 -9.33 7.11 99.48 0.71 -8.63 16 5 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 6 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 7 C -0.41 -23.36 9.44 67.92 0.64 -22.72 16 8 H 0.10 5.20 5.30 -2.91 -0.02 5.18 16 9 O -0.22 -13.20 9.76 -22.77 -0.22 -13.43 16 10 C 0.13 6.60 6.64 22.56 0.15 6.75 16 11 C -0.21 -8.89 9.99 22.42 0.22 -8.66 16 12 C -0.05 -1.75 10.03 22.23 0.22 -1.53 16 13 C -0.20 -7.11 8.65 22.43 0.19 -6.91 16 14 C 0.18 6.74 6.27 38.16 0.24 6.98 16 15 N -0.66 -18.73 5.33 -307.28 -1.64 -20.37 16 16 C 0.59 17.22 7.51 86.38 0.65 17.86 16 17 O -0.54 -19.09 14.55 -4.46 -0.06 -19.15 16 18 C -0.02 -0.48 6.97 39.80 0.28 -0.21 16 19 C -0.07 -1.60 10.58 22.77 0.24 -1.36 16 20 C -0.18 -3.59 6.80 -20.41 -0.14 -3.73 16 21 C -0.09 -1.19 10.42 23.39 0.24 -0.94 16 22 C -0.21 -2.24 11.03 67.04 0.74 -1.51 16 23 S 0.16 2.02 23.24 -56.49 -1.31 0.71 16 24 C -0.02 -0.34 8.41 83.79 0.70 0.37 16 25 N -0.52 -9.58 6.08 -179.05 -1.09 -10.67 16 26 H 0.43 5.64 8.15 -92.71 -0.76 4.88 16 27 C -0.26 -11.01 9.05 22.51 0.20 -10.81 16 28 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 29 H 0.12 5.01 8.06 -2.91 -0.02 4.99 16 30 H 0.16 4.28 8.06 -2.91 -0.02 4.26 16 31 H 0.13 4.53 6.43 -2.91 -0.02 4.51 16 32 H 0.42 8.97 7.90 -92.71 -0.73 8.24 16 33 H 0.16 3.42 8.06 -2.91 -0.02 3.40 16 34 H 0.17 1.53 8.06 -2.91 -0.02 1.50 16 35 H 0.20 0.79 8.06 -2.91 -0.02 0.77 16 36 H 0.13 5.42 5.71 -2.91 -0.02 5.40 16 Total: -1.00 -75.21 332.89 2.75 -72.46 By element: Atomic # 1 Polarization: 29.27 SS G_CDS: -0.31 Total: 28.96 kcal Atomic # 6 Polarization: -32.17 SS G_CDS: 5.06 Total: -27.11 kcal Atomic # 7 Polarization: -83.66 SS G_CDS: -2.43 Total: -86.09 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -0.29 Total: -32.58 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.64 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -1.31 Total: 0.71 kcal Total: -75.21 2.75 -72.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915740997.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.480 kcal (2) G-P(sol) polarization free energy of solvation -75.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds