Wall clock time and date at job start Tue Mar 31 2020 15:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47395 * 2 1 4 4 S 1.81398 * 109.47308 * 239.99665 * 2 1 3 5 5 C 1.76197 * 103.00024 * 69.69286 * 4 2 1 6 6 C 1.38941 * 120.08146 * 6.09401 * 5 4 2 7 7 C 1.38098 * 119.93298 * 179.97438 * 6 5 4 8 8 C 1.38316 * 120.09662 * 0.02562 * 7 6 5 9 9 C 1.38288 * 120.16524 * 359.97438 * 8 7 6 10 10 C 1.38183 * 120.07052 * 0.25761 * 9 8 7 11 11 Cl 1.73596 * 120.05208 * 179.74353 * 10 9 8 12 12 C 1.50705 * 109.46809 * 119.99524 * 2 1 3 13 13 O 1.20833 * 119.99344 * 99.99863 * 12 2 1 14 14 O 1.34224 * 120.00131 * 280.00485 * 12 2 1 15 15 C 1.45205 * 116.99955 * 179.97438 * 14 12 2 16 16 C 1.52996 * 109.47091 * 179.97438 * 15 14 12 17 17 C 1.53000 * 109.46928 * 179.97438 * 16 15 14 18 18 C 1.50705 * 109.47115 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99902 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00002 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00026 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99926 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47119 * 59.99643 * 22 20 18 24 24 H 1.48498 * 109.47337 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47129 * 299.99942 * 22 20 18 26 26 H 1.09002 * 109.47489 * 185.73317 * 1 2 3 27 27 H 1.08993 * 109.47396 * 305.74235 * 1 2 3 28 28 H 1.09009 * 109.46495 * 65.73600 * 1 2 3 29 29 H 1.07995 * 120.03739 * 359.97438 * 6 5 4 30 30 H 1.08002 * 119.95337 * 180.02562 * 7 6 5 31 31 H 1.07996 * 119.91517 * 180.02562 * 8 7 6 32 32 H 1.08005 * 119.96397 * 179.97438 * 9 8 7 33 33 H 1.08998 * 109.46807 * 299.99798 * 15 14 12 34 34 H 1.09005 * 109.46887 * 59.99791 * 15 14 12 35 35 H 1.08998 * 109.47465 * 299.99804 * 16 15 14 36 36 H 1.08999 * 109.47432 * 60.00082 * 16 15 14 37 37 H 1.09000 * 109.47227 * 299.99727 * 17 16 15 38 38 H 1.09000 * 109.47279 * 60.00550 * 17 16 15 39 39 H 0.96996 * 119.99712 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 16 2.1347 -0.8552 -1.4810 5 6 1.7051 0.2530 -2.7818 6 6 1.1718 1.5013 -2.4855 7 6 0.8367 2.3676 -3.5074 8 6 1.0306 1.9941 -4.8250 9 6 1.5611 0.7526 -5.1245 10 6 1.8944 -0.1215 -4.1075 11 17 2.5541 -1.6824 -4.4842 12 6 2.0322 -0.7103 1.2306 13 8 2.4049 -1.8574 1.1561 14 8 2.0655 -0.0689 2.4092 15 6 2.5607 -0.8152 3.5521 16 6 2.5247 0.0742 4.7964 17 6 3.0459 -0.7124 6.0008 18 6 3.0099 0.1635 7.2266 19 1 2.6515 1.1797 7.1538 20 6 3.4354 -0.3321 8.4408 21 7 3.8723 -1.5694 8.5293 22 14 3.3914 0.7538 9.9601 23 1 1.9946 1.1867 10.2189 24 1 3.8972 -0.0096 11.1291 25 1 4.2469 1.9475 9.7402 26 1 -0.3634 -1.0225 0.1027 27 1 -0.3634 0.6003 0.8340 28 1 -0.3632 0.4224 -0.9370 29 1 1.0195 1.7939 -1.4572 30 1 0.4225 3.3382 -3.2775 31 1 0.7679 2.6741 -5.6218 32 1 1.7108 0.4642 -6.1545 33 1 1.9331 -1.6917 3.7132 34 1 3.5861 -1.1325 3.3622 35 1 3.1526 0.9505 4.6350 36 1 1.4995 0.3919 4.9865 37 1 2.4177 -1.5884 6.1621 38 1 4.0711 -1.0304 5.8111 39 1 4.1713 -1.9182 9.3836 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919507011.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:41 Heat of formation + Delta-G solvation = -82.616885 kcal Electronic energy + Delta-G solvation = -21770.967666 eV Core-core repulsion = 18216.319012 eV Total energy + Delta-G solvation = -3554.648654 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.44477 -39.57209 -36.84483 -36.67091 -34.24605 -33.84135 -31.75076 -31.41147 -31.10928 -27.29438 -25.32216 -23.51400 -23.42892 -23.03261 -20.97845 -20.37633 -18.67459 -17.70647 -16.95822 -16.69365 -16.40875 -16.14733 -15.71547 -15.34627 -14.65647 -14.52166 -14.45512 -14.16881 -14.15529 -13.44991 -13.19943 -12.84040 -12.50275 -12.21573 -12.12570 -12.10028 -11.96753 -11.87901 -11.80389 -11.31999 -10.98862 -10.74026 -10.70614 -10.49210 -10.48062 -10.36035 -10.25589 -9.78604 -9.55460 -9.30045 -9.21337 -8.41208 -7.82384 -6.05930 -4.09393 0.57114 0.69210 0.77492 1.64471 1.94580 2.13835 2.68902 3.06459 3.30552 3.35155 3.37378 4.19902 4.31360 4.38552 4.44615 4.45870 4.61023 4.75205 4.80900 4.96030 5.14917 5.22422 5.29710 5.29869 5.49877 5.52739 5.53338 5.65776 5.68367 5.89342 5.92989 6.21675 6.34257 6.47290 6.73125 6.91835 7.56213 7.66954 7.69387 7.91707 8.32268 8.96450 9.54962 11.05401 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.028961 B = 0.001969 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.569678 B =14219.742399 C =14882.090719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.102 4.102 3 H 0.127 0.873 4 S -0.003 6.003 5 C -0.093 4.093 6 C -0.128 4.128 7 C -0.093 4.093 8 C -0.116 4.116 9 C -0.091 4.091 10 C -0.022 4.022 11 Cl -0.052 7.052 12 C 0.480 3.520 13 O -0.490 6.490 14 O -0.349 6.349 15 C 0.068 3.932 16 C -0.108 4.108 17 C 0.024 3.976 18 C -0.523 4.523 19 H 0.057 0.943 20 C 0.057 3.943 21 N -0.894 5.894 22 Si 0.896 3.104 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.276 1.276 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.136 0.864 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.138 0.862 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.020 0.980 38 H 0.020 0.980 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.765 6.949 -29.715 31.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.232 4.232 3 H 0.145 0.855 4 S 0.243 5.757 5 C -0.207 4.207 6 C -0.152 4.152 7 C -0.113 4.113 8 C -0.137 4.137 9 C -0.112 4.112 10 C -0.056 4.056 11 Cl -0.022 7.022 12 C 0.320 3.680 13 O -0.377 6.377 14 O -0.266 6.266 15 C -0.005 4.005 16 C -0.146 4.146 17 C -0.013 4.013 18 C -0.561 4.561 19 H 0.075 0.925 20 C -0.145 4.145 21 N -0.533 5.533 22 Si 0.724 3.276 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.202 1.202 26 H 0.097 0.903 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.154 0.846 30 H 0.151 0.849 31 H 0.152 0.848 32 H 0.156 0.844 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.920 5.174 -29.486 30.726 hybrid contribution -0.445 1.548 0.951 1.870 sum -7.365 6.721 -28.535 30.227 Atomic orbital electron populations 1.22102 0.89332 1.04926 1.04250 1.23326 1.02076 1.04391 0.93370 0.85491 1.86527 1.72362 1.23412 0.93402 1.21961 1.03774 0.98754 0.96242 1.21276 1.00916 0.92396 1.00585 1.21196 0.98204 0.99465 0.92453 1.21167 0.99621 0.95974 0.96958 1.21030 0.98313 0.93270 0.98544 1.20394 1.03640 0.89189 0.92370 1.98398 1.83994 1.25754 1.94096 1.22248 0.75660 0.85366 0.84727 1.90722 1.43376 1.17780 1.85833 1.86477 1.76541 1.46307 1.17266 1.23629 0.99210 0.95499 0.82139 1.21783 1.02086 0.98780 0.91968 1.19053 0.96551 0.95436 0.90248 1.21116 1.43235 0.98759 0.93010 0.92475 1.25035 0.95188 0.95119 0.99140 1.69953 1.43036 1.14663 1.25615 0.86595 0.78442 0.80433 0.82159 1.20178 1.21245 1.20172 0.90315 0.89791 0.90305 0.84626 0.84897 0.84800 0.84443 0.91205 0.91191 0.92057 0.92062 0.96185 0.96178 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 8.69 37.16 0.32 -0.93 16 2 C -0.10 -1.09 2.50 -27.88 -0.07 -1.16 16 3 H 0.13 1.10 6.86 -51.92 -0.36 0.75 16 4 S 0.00 -0.04 19.46 -107.50 -2.09 -2.13 16 5 C -0.09 -0.90 5.97 -39.02 -0.23 -1.13 16 6 C -0.13 -0.97 8.02 -39.37 -0.32 -1.29 16 7 C -0.09 -0.56 10.04 -39.60 -0.40 -0.96 16 8 C -0.12 -0.66 10.04 -39.53 -0.40 -1.06 16 9 C -0.09 -0.64 9.82 -39.58 -0.39 -1.03 16 10 C -0.02 -0.21 6.34 -39.30 -0.25 -0.46 16 11 Cl -0.05 -0.51 27.84 -51.86 -1.44 -1.95 16 12 C 0.48 7.12 7.13 36.01 0.26 7.38 16 13 O -0.49 -8.71 15.79 -18.76 -0.30 -9.01 16 14 O -0.35 -5.58 10.22 -39.24 -0.40 -5.98 16 15 C 0.07 1.23 5.47 37.16 0.20 1.43 16 16 C -0.11 -2.19 5.53 -26.73 -0.15 -2.34 16 17 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 18 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 19 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 22 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.08 0.54 6.08 -51.92 -0.32 0.23 16 29 H 0.14 0.86 4.99 -52.49 -0.26 0.60 16 30 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 31 H 0.13 0.42 8.06 -52.49 -0.42 0.00 16 32 H 0.14 0.70 8.06 -52.48 -0.42 0.27 16 33 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 34 H 0.07 1.27 8.13 -51.93 -0.42 0.85 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 359.82 15.07 5.42 5.42 Total: -1.00 -31.87 359.82 -10.19 -42.06 By element: Atomic # 1 Polarization: 0.70 SS G_CDS: -5.12 Total: -4.42 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: -1.97 Total: -14.45 kcal Atomic # 7 Polarization: -26.66 SS G_CDS: 0.74 Total: -25.92 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -0.70 Total: -14.99 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -0.04 SS G_CDS: -2.09 Total: -2.13 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.44 Total: -1.95 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.87 -10.19 -42.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919507011.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.558 kcal (2) G-P(sol) polarization free energy of solvation -31.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds