Wall clock time and date at job start Tue Mar 31 2020 15:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47395 * 2 1 4 4 S 1.81398 * 109.47308 * 239.99665 * 2 1 3 5 5 C 1.76197 * 103.00024 * 69.69286 * 4 2 1 6 6 C 1.38941 * 120.08146 * 6.09401 * 5 4 2 7 7 C 1.38098 * 119.93298 * 179.97438 * 6 5 4 8 8 C 1.38316 * 120.09662 * 0.02562 * 7 6 5 9 9 C 1.38288 * 120.16524 * 359.97438 * 8 7 6 10 10 C 1.38183 * 120.07052 * 0.25761 * 9 8 7 11 11 Cl 1.73596 * 120.05208 * 179.74353 * 10 9 8 12 12 C 1.50705 * 109.46809 * 119.99524 * 2 1 3 13 13 O 1.20833 * 119.99344 * 99.99863 * 12 2 1 14 14 O 1.34224 * 120.00131 * 280.00485 * 12 2 1 15 15 C 1.45205 * 116.99955 * 179.97438 * 14 12 2 16 16 C 1.52996 * 109.47091 * 179.97438 * 15 14 12 17 17 C 1.53000 * 109.46928 * 179.97438 * 16 15 14 18 18 C 1.50705 * 109.47115 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99902 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00002 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00026 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99926 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47119 * 59.99643 * 22 20 18 24 24 H 1.48498 * 109.47337 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47129 * 299.99942 * 22 20 18 26 26 H 1.09002 * 109.47489 * 185.73317 * 1 2 3 27 27 H 1.08993 * 109.47396 * 305.74235 * 1 2 3 28 28 H 1.09009 * 109.46495 * 65.73600 * 1 2 3 29 29 H 1.07995 * 120.03739 * 359.97438 * 6 5 4 30 30 H 1.08002 * 119.95337 * 180.02562 * 7 6 5 31 31 H 1.07996 * 119.91517 * 180.02562 * 8 7 6 32 32 H 1.08005 * 119.96397 * 179.97438 * 9 8 7 33 33 H 1.08998 * 109.46807 * 299.99798 * 15 14 12 34 34 H 1.09005 * 109.46887 * 59.99791 * 15 14 12 35 35 H 1.08998 * 109.47465 * 299.99804 * 16 15 14 36 36 H 1.08999 * 109.47432 * 60.00082 * 16 15 14 37 37 H 1.09000 * 109.47227 * 299.99727 * 17 16 15 38 38 H 1.09000 * 109.47279 * 60.00550 * 17 16 15 39 39 H 0.96996 * 119.99712 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 16 2.1347 -0.8552 -1.4810 5 6 1.7051 0.2530 -2.7818 6 6 1.1718 1.5013 -2.4855 7 6 0.8367 2.3676 -3.5074 8 6 1.0306 1.9941 -4.8250 9 6 1.5611 0.7526 -5.1245 10 6 1.8944 -0.1215 -4.1075 11 17 2.5541 -1.6824 -4.4842 12 6 2.0322 -0.7103 1.2306 13 8 2.4049 -1.8574 1.1561 14 8 2.0655 -0.0689 2.4092 15 6 2.5607 -0.8152 3.5521 16 6 2.5247 0.0742 4.7964 17 6 3.0459 -0.7124 6.0008 18 6 3.0099 0.1635 7.2266 19 1 2.6515 1.1797 7.1538 20 6 3.4354 -0.3321 8.4408 21 7 3.8723 -1.5694 8.5293 22 14 3.3914 0.7538 9.9601 23 1 1.9946 1.1867 10.2189 24 1 3.8972 -0.0096 11.1291 25 1 4.2469 1.9475 9.7402 26 1 -0.3634 -1.0225 0.1027 27 1 -0.3634 0.6003 0.8340 28 1 -0.3632 0.4224 -0.9370 29 1 1.0195 1.7939 -1.4572 30 1 0.4225 3.3382 -3.2775 31 1 0.7679 2.6741 -5.6218 32 1 1.7108 0.4642 -6.1545 33 1 1.9331 -1.6917 3.7132 34 1 3.5861 -1.1325 3.3622 35 1 3.1526 0.9505 4.6350 36 1 1.4995 0.3919 4.9865 37 1 2.4177 -1.5884 6.1621 38 1 4.0711 -1.0304 5.8111 39 1 4.1713 -1.9182 9.3836 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919507011.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:40 Heat of formation + Delta-G solvation = -97.951520 kcal Electronic energy + Delta-G solvation = -21771.632626 eV Core-core repulsion = 18216.319012 eV Total energy + Delta-G solvation = -3555.313614 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.71675 -40.11112 -38.04873 -37.49670 -35.98334 -34.89861 -33.62557 -32.02360 -31.64451 -29.10892 -26.43766 -24.99499 -23.99909 -23.82612 -22.22776 -22.05642 -19.49173 -18.90528 -18.40876 -17.86091 -17.64768 -17.18715 -16.56836 -16.46401 -16.00208 -15.88729 -15.17901 -15.09836 -14.80243 -14.60147 -14.23914 -14.13879 -13.83820 -13.64645 -13.47848 -13.21607 -12.80909 -12.64007 -12.57442 -12.54349 -12.46461 -12.41277 -12.13003 -11.96225 -11.84698 -11.46525 -11.46343 -11.26546 -11.10167 -10.87036 -10.57165 -9.85966 -8.61920 -8.21953 -6.33716 -0.09322 0.03623 0.17144 0.87284 1.00239 1.28215 1.41423 1.44850 1.51138 1.54338 2.41098 2.55537 3.11921 3.32967 3.53020 3.65379 3.78209 3.96086 4.00449 4.03196 4.28814 4.33679 4.36646 4.42058 4.50287 4.58378 4.77323 4.78261 4.80582 5.00861 5.02892 5.05370 5.23370 5.28877 5.41156 5.48144 5.62345 5.76772 5.79326 6.17725 6.45085 6.82104 7.35849 8.89972 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.028961 B = 0.001969 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.569678 B =14219.742399 C =14882.090719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 H 0.152 0.848 4 S -0.063 6.063 5 C -0.103 4.103 6 C -0.132 4.132 7 C -0.090 4.090 8 C -0.107 4.107 9 C -0.096 4.096 10 C -0.041 4.041 11 Cl -0.070 7.070 12 C 0.478 3.522 13 O -0.524 6.524 14 O -0.344 6.344 15 C 0.077 3.923 16 C -0.092 4.092 17 C 0.025 3.975 18 C -0.543 4.543 19 H 0.067 0.933 20 C -0.003 4.003 21 N -0.934 5.934 22 Si 0.969 3.031 23 H -0.265 1.265 24 H -0.285 1.285 25 H -0.265 1.265 26 H 0.066 0.934 27 H 0.097 0.903 28 H 0.099 0.901 29 H 0.148 0.852 30 H 0.164 0.836 31 H 0.166 0.834 32 H 0.154 0.846 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.070 0.930 37 H -0.003 1.003 38 H -0.004 1.004 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.216 10.265 -30.804 33.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.214 4.214 3 H 0.170 0.830 4 S 0.182 5.818 5 C -0.217 4.217 6 C -0.156 4.156 7 C -0.110 4.110 8 C -0.128 4.128 9 C -0.116 4.116 10 C -0.074 4.074 11 Cl -0.041 7.041 12 C 0.320 3.680 13 O -0.412 6.412 14 O -0.261 6.261 15 C 0.004 3.996 16 C -0.130 4.130 17 C -0.012 4.012 18 C -0.581 4.581 19 H 0.085 0.915 20 C -0.201 4.201 21 N -0.574 5.574 22 Si 0.794 3.206 23 H -0.190 1.190 24 H -0.211 1.211 25 H -0.190 1.190 26 H 0.085 0.915 27 H 0.116 0.884 28 H 0.117 0.883 29 H 0.166 0.834 30 H 0.181 0.819 31 H 0.184 0.816 32 H 0.171 0.829 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.015 0.985 38 H 0.014 0.986 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.387 8.517 -30.609 32.860 hybrid contribution -0.017 0.557 1.145 1.274 sum -8.404 9.074 -29.463 31.954 Atomic orbital electron populations 1.22135 0.87414 1.04682 1.05902 1.23326 1.03274 1.04502 0.90340 0.83036 1.86719 1.73729 1.25828 0.95499 1.21868 1.05598 0.99129 0.95121 1.21523 1.00473 0.91711 1.01873 1.21601 0.97070 1.00226 0.92065 1.21604 0.97698 0.95528 0.97925 1.21329 0.97991 0.93495 0.98822 1.20648 1.04728 0.89051 0.92987 1.98386 1.84395 1.27178 1.94145 1.23075 0.74574 0.85201 0.85123 1.90713 1.44853 1.19479 1.86199 1.86455 1.76501 1.45828 1.17269 1.23243 0.98951 0.94926 0.82503 1.21461 1.02348 0.98328 0.90869 1.18940 0.94911 0.95106 0.92259 1.21589 1.42999 0.99460 0.94029 0.91499 1.26033 0.94673 0.96537 1.02827 1.70097 1.44077 1.16659 1.26544 0.85433 0.79049 0.78525 0.77639 1.18951 1.21078 1.19009 0.91533 0.88422 0.88253 0.83410 0.81882 0.81624 0.82865 0.91621 0.91866 0.91271 0.91084 0.98486 0.98599 0.92706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 8.69 71.98 0.63 -1.55 16 2 C -0.09 -1.73 2.50 29.85 0.07 -1.66 16 3 H 0.15 2.28 6.86 -2.39 -0.02 2.26 16 4 S -0.06 -1.48 19.46 -56.49 -1.10 -2.58 16 5 C -0.10 -1.88 5.97 22.63 0.14 -1.74 16 6 C -0.13 -1.65 8.02 22.40 0.18 -1.47 16 7 C -0.09 -0.72 10.04 22.25 0.22 -0.50 16 8 C -0.11 -0.81 10.04 22.30 0.22 -0.59 16 9 C -0.10 -1.14 9.82 22.27 0.22 -0.92 16 10 C -0.04 -0.73 6.34 22.45 0.14 -0.59 16 11 Cl -0.07 -1.42 27.84 -2.72 -0.08 -1.49 16 12 C 0.48 14.11 7.13 71.24 0.51 14.62 16 13 O -0.52 -19.16 15.79 21.94 0.35 -18.81 16 14 O -0.34 -10.73 10.22 -51.36 -0.52 -11.26 16 15 C 0.08 2.81 5.47 71.98 0.39 3.20 16 16 C -0.09 -3.72 5.53 30.59 0.17 -3.55 16 17 C 0.03 1.31 4.97 29.85 0.15 1.45 16 18 C -0.54 -30.35 9.11 25.60 0.23 -30.12 16 19 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 20 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 21 N -0.93 -56.74 13.29 21.45 0.28 -56.46 16 22 Si 0.97 43.63 29.54 68.60 2.03 45.66 16 23 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 24 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 25 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 26 H 0.07 1.19 8.14 -2.39 -0.02 1.18 16 27 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.10 1.12 6.08 -2.38 -0.01 1.11 16 29 H 0.15 1.38 4.99 -2.91 -0.01 1.37 16 30 H 0.16 0.34 8.06 -2.91 -0.02 0.32 16 31 H 0.17 0.21 8.06 -2.91 -0.02 0.19 16 32 H 0.15 1.22 8.06 -2.91 -0.02 1.20 16 33 H 0.07 2.43 8.13 -2.39 -0.02 2.41 16 34 H 0.06 2.37 8.13 -2.38 -0.02 2.35 16 35 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 36 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 37 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 38 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 39 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -70.76 359.82 5.75 -65.01 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: 1.06 Total: 3.04 kcal Atomic # 6 Polarization: -26.85 SS G_CDS: 3.74 Total: -23.11 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: 0.28 Total: -56.46 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -0.18 Total: -30.07 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: -1.48 SS G_CDS: -1.10 Total: -2.58 kcal Atomic # 17 Polarization: -1.42 SS G_CDS: -0.08 Total: -1.49 kcal Total: -70.76 5.75 -65.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919507011.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.942 kcal (2) G-P(sol) polarization free energy of solvation -70.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds