Wall clock time and date at job start Tue Mar 31 2020 14:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38240 * 120.00830 * 2 1 4 4 C 1.38214 * 120.01329 * 179.97438 * 3 2 1 5 5 C 1.38265 * 120.03154 * 0.02562 * 4 3 2 6 6 C 1.50693 * 119.99863 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.47486 * 89.99819 * 6 5 4 8 8 O 1.20833 * 119.99747 * 0.02562 * 7 6 5 9 9 O 1.34230 * 120.00262 * 179.72204 * 7 6 5 10 10 C 1.45202 * 116.99836 * 180.27336 * 9 7 6 11 11 C 1.52994 * 109.46919 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47236 * 180.02562 * 11 10 9 13 13 S 1.81003 * 109.47340 * 180.02562 * 12 11 10 14 14 C 1.76196 * 100.00033 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00020 * 0.02562 * 14 13 12 16 16 C 1.38800 * 120.00036 * 179.97438 * 14 13 12 17 17 N 1.31635 * 120.00166 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 119.99932 * 0.02562 * 16 14 13 19 19 H 1.48506 * 109.46996 * 89.99758 * 18 16 14 20 20 H 1.48498 * 109.47188 * 209.99749 * 18 16 14 21 21 H 1.48499 * 109.47268 * 329.99655 * 18 16 14 22 22 C 1.38197 * 120.00613 * 0.23728 * 5 4 3 23 23 C 1.38339 * 120.00675 * 179.97438 * 2 1 3 24 24 Cl 1.73601 * 120.01241 * 0.04504 * 23 2 1 25 25 H 1.09005 * 109.46625 * 90.00798 * 1 2 3 26 26 H 1.08994 * 109.47232 * 210.00152 * 1 2 3 27 27 H 1.09001 * 109.47324 * 330.00622 * 1 2 3 28 28 H 1.07994 * 119.99243 * 359.94628 * 3 2 1 29 29 H 1.08001 * 119.98689 * 179.97438 * 4 3 2 30 30 H 1.09004 * 109.47069 * 330.00021 * 6 5 4 31 31 H 1.09000 * 109.47237 * 210.00527 * 6 5 4 32 32 H 1.08998 * 109.47630 * 300.00638 * 10 9 7 33 33 H 1.09004 * 109.46770 * 60.01042 * 10 9 7 34 34 H 1.08997 * 109.47687 * 300.00275 * 11 10 9 35 35 H 1.09002 * 109.47633 * 60.00402 * 11 10 9 36 36 H 1.09006 * 109.46823 * 299.99852 * 12 11 10 37 37 H 1.08996 * 109.47249 * 60.00061 * 12 11 10 38 38 H 0.96993 * 120.00015 * 180.02562 * 17 16 14 39 39 H 1.08009 * 120.00304 * 179.74435 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2726 0.0002 0.0005 6 6 5.7795 0.0012 0.0005 7 6 6.2819 0.0016 1.4213 8 8 5.4967 0.0007 2.3397 9 8 7.6016 -0.0031 1.6665 10 6 8.0133 -0.0086 3.0590 11 6 9.5411 -0.0129 3.1390 12 6 9.9749 -0.0193 4.6062 13 16 11.7825 -0.0236 4.7009 14 6 11.9972 -0.0298 6.4497 15 1 11.1347 -0.0305 7.0997 16 6 13.2749 -0.0349 6.9921 17 7 13.4353 -0.0401 8.2986 18 14 14.7667 -0.0345 5.8679 19 1 15.1654 1.3658 5.5751 20 1 15.8900 -0.7396 6.5358 21 1 14.4307 -0.7291 4.5991 22 6 3.5825 -1.1971 -0.0050 23 6 2.1988 -1.1980 0.0005 24 17 1.3313 -2.7017 0.0000 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5137 28 1 1.6584 2.1324 -0.0009 29 1 4.1202 2.1327 0.0001 30 1 6.1422 0.8915 -0.5133 31 1 6.1434 -0.8885 -0.5134 32 1 7.6262 0.8809 3.5559 33 1 7.6209 -0.8991 3.5503 34 1 9.9286 -0.9022 2.6421 35 1 9.9332 0.8777 2.6478 36 1 9.5875 0.8700 5.1035 37 1 9.5830 -0.9100 5.0971 38 1 14.3281 -0.0433 8.6776 39 1 4.1232 -2.1321 -0.0091 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924264769.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:25 Heat of formation + Delta-G solvation = -95.095481 kcal Electronic energy + Delta-G solvation = -21363.996730 eV Core-core repulsion = 17808.806963 eV Total energy + Delta-G solvation = -3555.189767 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.80960 -39.74438 -37.04575 -36.67726 -34.30627 -33.62975 -32.47159 -31.19292 -30.46840 -27.03434 -25.86412 -25.43502 -23.29402 -22.10312 -21.45327 -20.77939 -17.91863 -17.39491 -17.02396 -16.97313 -16.23428 -16.18405 -15.75075 -15.02435 -14.85139 -14.58937 -14.34182 -14.21546 -13.46945 -13.36246 -13.22016 -12.86792 -12.80845 -12.75086 -12.48781 -12.28943 -12.05077 -11.77119 -11.65385 -11.55849 -11.24283 -11.13554 -11.11687 -11.00334 -10.74201 -10.39380 -10.27330 -9.84388 -9.25887 -9.04118 -8.96682 -8.63575 -7.00159 -6.31468 -4.05068 0.67529 0.81607 1.74815 2.04416 2.44474 2.97584 3.24116 3.27748 3.42418 3.54776 4.04451 4.27484 4.28187 4.42211 4.60030 4.61008 4.72126 4.79178 4.90962 5.00686 5.03510 5.07444 5.11828 5.15327 5.16914 5.25105 5.35768 5.41739 5.61723 5.65007 5.72911 5.75055 5.94982 6.00247 6.02191 6.30478 6.32050 6.38394 6.54330 7.61138 7.92094 8.41396 9.13779 10.77907 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.031521 B = 0.001691 C = 0.001673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.096097 B =16551.485011 C =16731.695926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.073 4.073 3 C -0.108 4.108 4 C -0.093 4.093 5 C -0.070 4.070 6 C -0.074 4.074 7 C 0.459 3.541 8 O -0.500 6.500 9 O -0.356 6.356 10 C 0.073 3.927 11 C -0.101 4.101 12 C -0.085 4.085 13 S -0.206 6.206 14 C -0.505 4.505 15 H 0.089 0.911 16 C 0.092 3.908 17 N -0.880 5.880 18 Si 0.862 3.138 19 H -0.268 1.268 20 H -0.275 1.275 21 H -0.238 1.238 22 C -0.089 4.089 23 C -0.036 4.036 24 Cl -0.068 7.068 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.133 0.867 29 H 0.130 0.870 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.271 0.729 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.561 0.440 -22.497 33.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.074 4.074 3 C -0.126 4.126 4 C -0.111 4.111 5 C -0.071 4.071 6 C -0.111 4.111 7 C 0.301 3.699 8 O -0.387 6.387 9 O -0.273 6.273 10 C -0.002 4.002 11 C -0.139 4.139 12 C -0.233 4.233 13 S 0.022 5.978 14 C -0.653 4.653 15 H 0.107 0.893 16 C -0.116 4.116 17 N -0.517 5.517 18 Si 0.687 3.313 19 H -0.193 1.193 20 H -0.200 1.200 21 H -0.162 1.162 22 C -0.108 4.108 23 C -0.062 4.062 24 Cl -0.039 7.039 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.151 0.849 29 H 0.148 0.852 30 H 0.137 0.863 31 H 0.136 0.864 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -23.934 0.295 -22.830 33.078 hybrid contribution -0.162 -0.126 1.060 1.080 sum -24.096 0.169 -21.770 32.474 Atomic orbital electron populations 1.20888 0.90209 1.03660 1.02929 1.19819 0.96844 0.91457 0.99293 1.20968 0.93939 0.97212 1.00474 1.21115 0.94321 0.97664 0.97986 1.19175 0.93605 0.93065 1.01215 1.20290 0.91842 1.07228 0.91743 1.23450 0.81018 0.73113 0.92319 1.90715 1.56766 1.44532 1.46701 1.86462 1.25074 1.83596 1.32145 1.23234 0.96253 1.02836 0.77887 1.21328 0.91354 1.04402 0.96848 1.22950 0.99443 1.04239 0.96669 1.84156 1.02413 1.97555 1.13697 1.22123 0.97106 1.58677 0.87375 0.89299 1.24796 0.98612 0.93289 0.94946 1.69937 1.23533 1.48035 1.10150 0.86669 0.82528 0.79723 0.82408 1.19323 1.20031 1.16154 1.20883 0.92048 0.98571 0.99271 1.20720 0.92215 0.86859 1.06456 1.98364 1.76750 1.31881 1.96896 0.90581 0.90741 0.90954 0.84866 0.85204 0.86295 0.86407 0.90996 0.90987 0.90243 0.90251 0.91020 0.90972 0.91914 0.84847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 9.62 36.00 0.35 -0.37 16 2 C -0.07 -0.59 5.88 -104.59 -0.62 -1.20 16 3 C -0.11 -0.79 9.70 -39.59 -0.38 -1.17 16 4 C -0.09 -0.72 9.70 -39.58 -0.38 -1.10 16 5 C -0.07 -0.59 4.37 -104.63 -0.46 -1.05 16 6 C -0.07 -0.53 5.94 -29.04 -0.17 -0.70 16 7 C 0.46 5.27 7.95 36.00 0.29 5.55 16 8 O -0.50 -7.39 15.78 -18.76 -0.30 -7.68 16 9 O -0.36 -4.41 10.22 -39.26 -0.40 -4.81 16 10 C 0.07 0.98 5.47 37.15 0.20 1.18 16 11 C -0.10 -1.51 5.60 -26.73 -0.15 -1.66 16 12 C -0.08 -1.60 5.67 37.16 0.21 -1.39 16 13 S -0.21 -4.93 19.41 -107.50 -2.09 -7.02 16 14 C -0.51 -14.55 10.04 30.94 0.31 -14.24 16 15 H 0.09 2.72 8.03 -52.49 -0.42 2.30 16 16 C 0.09 2.67 5.50 -17.43 -0.10 2.58 16 17 N -0.88 -26.56 13.97 55.49 0.78 -25.78 16 18 Si 0.86 21.29 27.74 -169.99 -4.71 16.58 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.24 -5.73 6.74 56.52 0.38 -5.35 16 22 C -0.09 -0.79 9.48 -39.55 -0.38 -1.17 16 23 C -0.04 -0.32 6.31 -39.50 -0.25 -0.57 16 24 Cl -0.07 -0.58 27.30 -51.86 -1.42 -1.99 16 25 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.47 6.90 -51.93 -0.36 0.11 16 27 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 28 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 29 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 30 H 0.12 0.57 8.09 -51.93 -0.42 0.16 16 31 H 0.12 0.61 8.08 -51.93 -0.42 0.19 16 32 H 0.07 0.97 8.13 -51.93 -0.42 0.54 16 33 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 34 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.07 1.35 8.14 -51.91 -0.42 0.92 16 37 H 0.07 1.36 8.14 -51.92 -0.42 0.94 16 38 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 39 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 LS Contribution 365.27 15.07 5.50 5.50 Total: -1.00 -33.09 365.27 -9.58 -42.67 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -5.42 Total: -2.16 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: -1.53 Total: -15.30 kcal Atomic # 7 Polarization: -26.56 SS G_CDS: 0.78 Total: -25.78 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: -0.70 Total: -12.50 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.71 Total: 16.58 kcal Atomic # 16 Polarization: -4.93 SS G_CDS: -2.09 Total: -7.02 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.42 Total: -1.99 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.09 -9.58 -42.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924264769.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.424 kcal (2) G-P(sol) polarization free energy of solvation -33.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds