Wall clock time and date at job start Tue Mar 31 2020 14:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38240 * 120.00830 * 2 1 4 4 C 1.38214 * 120.01329 * 179.97438 * 3 2 1 5 5 C 1.38265 * 120.03154 * 0.02562 * 4 3 2 6 6 C 1.50693 * 119.99863 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.47486 * 89.99819 * 6 5 4 8 8 O 1.20833 * 119.99747 * 0.02562 * 7 6 5 9 9 O 1.34230 * 120.00262 * 179.72204 * 7 6 5 10 10 C 1.45202 * 116.99836 * 180.27336 * 9 7 6 11 11 C 1.52994 * 109.46919 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47236 * 180.02562 * 11 10 9 13 13 S 1.81003 * 109.47340 * 180.02562 * 12 11 10 14 14 C 1.76196 * 100.00033 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00020 * 0.02562 * 14 13 12 16 16 C 1.38800 * 120.00036 * 179.97438 * 14 13 12 17 17 N 1.31635 * 120.00166 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 119.99932 * 0.02562 * 16 14 13 19 19 H 1.48506 * 109.46996 * 89.99758 * 18 16 14 20 20 H 1.48498 * 109.47188 * 209.99749 * 18 16 14 21 21 H 1.48499 * 109.47268 * 329.99655 * 18 16 14 22 22 C 1.38197 * 120.00613 * 0.23728 * 5 4 3 23 23 C 1.38339 * 120.00675 * 179.97438 * 2 1 3 24 24 Cl 1.73601 * 120.01241 * 0.04504 * 23 2 1 25 25 H 1.09005 * 109.46625 * 90.00798 * 1 2 3 26 26 H 1.08994 * 109.47232 * 210.00152 * 1 2 3 27 27 H 1.09001 * 109.47324 * 330.00622 * 1 2 3 28 28 H 1.07994 * 119.99243 * 359.94628 * 3 2 1 29 29 H 1.08001 * 119.98689 * 179.97438 * 4 3 2 30 30 H 1.09004 * 109.47069 * 330.00021 * 6 5 4 31 31 H 1.09000 * 109.47237 * 210.00527 * 6 5 4 32 32 H 1.08998 * 109.47630 * 300.00638 * 10 9 7 33 33 H 1.09004 * 109.46770 * 60.01042 * 10 9 7 34 34 H 1.08997 * 109.47687 * 300.00275 * 11 10 9 35 35 H 1.09002 * 109.47633 * 60.00402 * 11 10 9 36 36 H 1.09006 * 109.46823 * 299.99852 * 12 11 10 37 37 H 1.08996 * 109.47249 * 60.00061 * 12 11 10 38 38 H 0.96993 * 120.00015 * 180.02562 * 17 16 14 39 39 H 1.08009 * 120.00304 * 179.74435 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2726 0.0002 0.0005 6 6 5.7795 0.0012 0.0005 7 6 6.2819 0.0016 1.4213 8 8 5.4967 0.0007 2.3397 9 8 7.6016 -0.0031 1.6665 10 6 8.0133 -0.0086 3.0590 11 6 9.5411 -0.0129 3.1390 12 6 9.9749 -0.0193 4.6062 13 16 11.7825 -0.0236 4.7009 14 6 11.9972 -0.0298 6.4497 15 1 11.1347 -0.0305 7.0997 16 6 13.2749 -0.0349 6.9921 17 7 13.4353 -0.0401 8.2986 18 14 14.7667 -0.0345 5.8679 19 1 15.1654 1.3658 5.5751 20 1 15.8900 -0.7396 6.5358 21 1 14.4307 -0.7291 4.5991 22 6 3.5825 -1.1971 -0.0050 23 6 2.1988 -1.1980 0.0005 24 17 1.3313 -2.7017 0.0000 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5137 28 1 1.6584 2.1324 -0.0009 29 1 4.1202 2.1327 0.0001 30 1 6.1422 0.8915 -0.5133 31 1 6.1434 -0.8885 -0.5134 32 1 7.6262 0.8809 3.5559 33 1 7.6209 -0.8991 3.5503 34 1 9.9286 -0.9022 2.6421 35 1 9.9332 0.8777 2.6478 36 1 9.5875 0.8700 5.1035 37 1 9.5830 -0.9100 5.0971 38 1 14.3281 -0.0433 8.6776 39 1 4.1232 -2.1321 -0.0091 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924264769.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:24 Heat of formation + Delta-G solvation = -111.803949 kcal Electronic energy + Delta-G solvation = -21364.721263 eV Core-core repulsion = 17808.806963 eV Total energy + Delta-G solvation = -3555.914300 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.069 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.67624 -40.39677 -37.92976 -37.42287 -35.01810 -34.79156 -34.68372 -31.76239 -31.06965 -28.28288 -27.74687 -26.37411 -23.86505 -23.02359 -22.56562 -21.50524 -19.64591 -18.71851 -17.90083 -17.77551 -17.12350 -17.01293 -16.90792 -16.30956 -16.01050 -15.99611 -15.08948 -14.95076 -14.79245 -14.38269 -14.32542 -14.12977 -13.82052 -13.52941 -13.37459 -13.29829 -13.05248 -12.86739 -12.63639 -12.60973 -12.38717 -12.37933 -12.24488 -12.18116 -11.81466 -11.73771 -11.51831 -11.51317 -11.16927 -10.61277 -9.84219 -9.55356 -9.01139 -8.52477 -6.24851 0.08038 0.22811 1.06848 1.13005 1.17071 1.32998 1.46084 1.54512 1.87207 2.24572 2.61751 2.66553 2.85517 3.46147 3.74938 3.76181 3.82897 3.92097 3.96497 4.11785 4.11974 4.19597 4.28146 4.39949 4.52188 4.57383 4.64424 4.66208 4.72423 4.75928 4.89470 4.99079 5.09659 5.14556 5.22164 5.40645 5.43027 5.46027 5.68720 5.82501 6.09640 6.70165 6.90931 8.60564 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.031521 B = 0.001691 C = 0.001673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.096097 B =16551.485011 C =16731.695926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.083 4.083 3 C -0.113 4.113 4 C -0.100 4.100 5 C -0.082 4.082 6 C -0.066 4.066 7 C 0.460 3.540 8 O -0.538 6.538 9 O -0.354 6.354 10 C 0.079 3.921 11 C -0.087 4.087 12 C -0.075 4.075 13 S -0.204 6.204 14 C -0.528 4.528 15 H 0.050 0.950 16 C 0.037 3.963 17 N -0.922 5.922 18 Si 0.927 3.073 19 H -0.260 1.260 20 H -0.264 1.264 21 H -0.226 1.226 22 C -0.104 4.104 23 C -0.055 4.055 24 Cl -0.073 7.073 25 H 0.086 0.914 26 H 0.067 0.933 27 H 0.085 0.915 28 H 0.156 0.844 29 H 0.149 0.851 30 H 0.150 0.850 31 H 0.141 0.859 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.277 0.723 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.500 1.138 -25.116 35.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.084 4.084 3 C -0.131 4.131 4 C -0.118 4.118 5 C -0.083 4.083 6 C -0.102 4.102 7 C 0.304 3.696 8 O -0.427 6.427 9 O -0.271 6.271 10 C 0.003 3.997 11 C -0.126 4.126 12 C -0.224 4.224 13 S 0.024 5.976 14 C -0.675 4.675 15 H 0.068 0.932 16 C -0.168 4.168 17 N -0.560 5.560 18 Si 0.748 3.252 19 H -0.185 1.185 20 H -0.188 1.188 21 H -0.150 1.150 22 C -0.122 4.122 23 C -0.081 4.081 24 Cl -0.044 7.044 25 H 0.105 0.895 26 H 0.086 0.914 27 H 0.104 0.896 28 H 0.174 0.826 29 H 0.166 0.834 30 H 0.167 0.833 31 H 0.159 0.841 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -23.882 0.990 -25.463 34.924 hybrid contribution -0.350 -0.329 1.896 1.956 sum -24.232 0.661 -23.567 33.809 Atomic orbital electron populations 1.20925 0.89003 1.03966 1.03691 1.20141 0.97952 0.91444 0.98869 1.21301 0.94143 0.97879 0.99757 1.21451 0.94759 0.98268 0.97288 1.19364 0.94309 0.93106 1.01495 1.20445 0.91002 1.09786 0.88993 1.24310 0.80089 0.71524 0.93657 1.90708 1.57361 1.46399 1.48228 1.86461 1.25963 1.83693 1.30972 1.22974 0.95024 1.02771 0.78899 1.21145 0.92483 1.05168 0.93761 1.22985 0.95533 1.04118 0.99738 1.83777 1.07028 1.97586 1.09221 1.22366 0.96237 1.58613 0.90285 0.93161 1.25816 1.01832 0.92646 0.96516 1.70043 1.24722 1.49032 1.12186 0.85693 0.78556 0.80301 0.80670 1.18469 1.18810 1.14950 1.21070 0.92278 0.99192 0.99710 1.20931 0.92556 0.87161 1.07478 1.98354 1.76826 1.32208 1.96978 0.89529 0.91433 0.89638 0.82621 0.83350 0.83278 0.84075 0.91043 0.91278 0.89549 0.89383 0.91153 0.91225 0.91371 0.84518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.27 9.62 71.23 0.68 -0.59 16 2 C -0.08 -1.25 5.88 -19.84 -0.12 -1.37 16 3 C -0.11 -1.45 9.70 22.26 0.22 -1.23 16 4 C -0.10 -1.34 9.70 22.27 0.22 -1.12 16 5 C -0.08 -1.24 4.37 -19.87 -0.09 -1.33 16 6 C -0.07 -0.76 5.94 29.10 0.17 -0.59 16 7 C 0.46 9.66 7.95 71.23 0.57 10.23 16 8 O -0.54 -15.38 15.78 21.94 0.35 -15.04 16 9 O -0.35 -7.96 10.22 -51.41 -0.53 -8.49 16 10 C 0.08 2.00 5.47 71.98 0.39 2.39 16 11 C -0.09 -2.42 5.60 30.59 0.17 -2.25 16 12 C -0.08 -2.78 5.67 71.98 0.41 -2.37 16 13 S -0.20 -9.58 19.41 -56.49 -1.10 -10.67 16 14 C -0.53 -30.93 10.04 67.95 0.68 -30.25 16 15 H 0.05 3.22 8.03 -2.91 -0.02 3.19 16 16 C 0.04 2.14 5.50 84.86 0.47 2.61 16 17 N -0.92 -56.66 13.97 21.65 0.30 -56.36 16 18 Si 0.93 43.47 27.74 68.60 1.90 45.37 16 19 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 20 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 21 H -0.23 -10.12 6.74 99.48 0.67 -9.45 16 22 C -0.10 -1.77 9.48 22.29 0.21 -1.56 16 23 C -0.05 -0.96 6.31 22.33 0.14 -0.82 16 24 Cl -0.07 -1.23 27.30 -2.72 -0.07 -1.31 16 25 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 26 H 0.07 0.81 6.90 -2.39 -0.02 0.80 16 27 H 0.08 0.66 8.09 -2.39 -0.02 0.64 16 28 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 29 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 30 H 0.15 0.86 8.09 -2.38 -0.02 0.84 16 31 H 0.14 1.01 8.08 -2.39 -0.02 0.99 16 32 H 0.07 1.83 8.13 -2.39 -0.02 1.81 16 33 H 0.07 1.80 8.13 -2.38 -0.02 1.78 16 34 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.07 2.61 8.14 -2.40 -0.02 2.59 16 38 H 0.28 15.66 8.31 -92.71 -0.77 14.89 16 39 H 0.14 2.07 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -72.34 365.27 5.99 -66.35 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: 1.01 Total: 8.39 kcal Atomic # 6 Polarization: -32.38 SS G_CDS: 4.13 Total: -28.25 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: 0.30 Total: -56.36 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.18 Total: -23.52 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.90 Total: 45.37 kcal Atomic # 16 Polarization: -9.58 SS G_CDS: -1.10 Total: -10.67 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -0.07 Total: -1.31 kcal Total: -72.34 5.99 -66.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924264769.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.457 kcal (2) G-P(sol) polarization free energy of solvation -72.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds