Wall clock time and date at job start Tue Mar 31 2020 15:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99830 * 2 1 4 4 H 1.48500 * 109.47209 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46784 * 299.99674 * 3 2 1 6 6 H 1.48494 * 109.47499 * 59.99377 * 3 2 1 7 7 C 1.37875 * 120.00202 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99900 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00069 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47179 * 179.97438 * 9 7 2 11 11 C 1.46507 * 119.99908 * 263.57440 * 10 9 7 12 12 C 1.52994 * 109.47046 * 270.94421 * 11 10 9 13 13 F 1.39900 * 109.47433 * 60.00274 * 12 11 10 14 14 F 1.39902 * 109.47054 * 180.02562 * 12 11 10 15 15 F 1.39899 * 109.47375 * 299.99730 * 12 11 10 16 16 C 1.34772 * 119.99980 * 83.57963 * 10 9 7 17 17 O 1.21628 * 119.99735 * 184.06904 * 16 10 9 18 18 C 1.47167 * 120.00252 * 4.06199 * 16 10 9 19 19 C 1.35758 * 125.13351 * 173.79154 * 18 16 10 20 20 C 1.46418 * 106.13703 * 180.02562 * 19 18 16 21 21 N 1.32944 * 133.88520 * 179.32806 * 20 19 18 22 22 C 1.31431 * 121.38648 * 180.02562 * 21 20 19 23 23 C 1.38861 * 121.18300 * 359.97438 * 22 21 20 24 24 C 1.38215 * 119.70936 * 0.02562 * 23 22 21 25 25 C 1.39298 * 118.33441 * 0.24838 * 24 23 22 26 26 O 1.34590 * 133.42122 * 179.72303 * 25 24 23 27 27 H 0.96998 * 120.00028 * 0.02562 * 1 2 3 28 28 H 1.09008 * 109.46561 * 60.00066 * 9 7 2 29 29 H 1.08995 * 109.47554 * 300.00104 * 9 7 2 30 30 H 1.08996 * 109.47361 * 30.94699 * 11 10 9 31 31 H 1.09009 * 109.46497 * 150.94679 * 11 10 9 32 32 H 1.07999 * 126.92628 * 359.44941 * 19 18 16 33 33 H 1.07995 * 119.40795 * 179.97438 * 22 21 20 34 34 H 1.07998 * 120.14870 * 179.97438 * 23 22 21 35 35 H 1.08004 * 120.83098 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3966 1.2123 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6125 0.0005 11 6 2.5713 -4.2616 -1.2603 12 6 1.5957 -5.4041 -1.5496 13 9 0.2968 -4.8942 -1.6495 14 9 1.9476 -6.0242 -2.7533 15 9 1.6511 -6.3390 -0.5103 16 6 2.7403 -4.0399 1.1604 17 8 3.5858 -4.9142 1.1533 18 6 2.3039 -3.4486 2.4354 19 6 2.6831 -3.8781 3.6662 20 6 2.0099 -3.0031 4.6279 21 7 1.9835 -2.9406 5.9556 22 6 1.2752 -2.0291 6.5840 23 6 0.5252 -1.0929 5.8844 24 6 0.5186 -1.1148 4.5025 25 6 1.2704 -2.0913 3.8531 26 8 1.4762 -2.3907 2.5572 27 1 -0.4850 0.8400 -0.0004 28 1 0.6248 -2.5570 -0.8898 29 1 0.6241 -2.5567 0.8902 30 1 2.5282 -3.5332 -2.0700 31 1 3.5834 -4.6589 -1.1824 32 1 3.3406 -4.7050 3.8907 33 1 1.2765 -2.0078 7.6637 34 1 -0.0511 -0.3515 6.4178 35 1 -0.0585 -0.3955 3.9403 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933807375.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:32 Heat of formation + Delta-G solvation = -136.063254 kcal Electronic energy + Delta-G solvation = -28615.138948 eV Core-core repulsion = 23972.455580 eV Total energy + Delta-G solvation = -4642.683368 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.77818 -47.32992 -47.22432 -42.34401 -39.47445 -38.44497 -35.65591 -32.93569 -32.83607 -31.22780 -30.49873 -29.14317 -27.17566 -24.86857 -23.37336 -23.18089 -22.75253 -21.27422 -19.87605 -18.41657 -18.22478 -17.77629 -17.31518 -17.22741 -16.47314 -16.23870 -15.98207 -15.60113 -15.23242 -14.52714 -14.34230 -14.15076 -14.10475 -13.75801 -13.70767 -13.42463 -13.40755 -13.33964 -13.06569 -12.83513 -12.76831 -12.51607 -12.46235 -12.14291 -11.98326 -11.39399 -11.11874 -10.84136 -10.37821 -10.35519 -10.05959 -9.89683 -9.31039 -8.77346 -8.64448 -8.51173 -8.20808 -6.28669 -4.35198 0.69095 1.33338 1.98195 2.69081 2.94007 3.13655 3.22999 3.23963 3.30802 3.48853 3.90883 4.08754 4.15313 4.25488 4.33323 4.58676 4.66813 4.85327 5.04078 5.06612 5.12176 5.27336 5.38167 5.53024 5.55631 5.75894 6.03786 6.13171 6.17239 6.33734 6.50121 7.03204 7.10736 7.27938 7.59071 7.73695 7.87529 7.97945 8.26713 8.68697 9.31097 10.78988 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.010188 B = 0.005839 C = 0.004158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.584775 B = 4794.176051 C = 6732.302298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.072 3.928 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.535 4.535 8 H 0.062 0.938 9 C 0.227 3.773 10 N -0.583 5.583 11 C 0.080 3.920 12 C 0.432 3.568 13 F -0.178 7.178 14 F -0.187 7.187 15 F -0.180 7.180 16 C 0.601 3.399 17 O -0.527 6.527 18 C 0.022 3.978 19 C -0.129 4.129 20 C 0.057 3.943 21 N -0.447 5.447 22 C 0.092 3.908 23 C -0.154 4.154 24 C -0.053 4.053 25 C 0.019 3.981 26 O -0.119 6.119 27 H 0.265 0.735 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.130 0.870 31 H 0.123 0.877 32 H 0.172 0.828 33 H 0.161 0.839 34 H 0.145 0.855 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.310 -3.910 4.585 6.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.132 4.132 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.574 4.574 8 H 0.080 0.920 9 C 0.109 3.891 10 N -0.313 5.313 11 C -0.047 4.047 12 C 0.376 3.624 13 F -0.159 7.159 14 F -0.168 7.168 15 F -0.162 7.162 16 C 0.388 3.612 17 O -0.406 6.406 18 C -0.031 4.031 19 C -0.151 4.151 20 C -0.072 4.072 21 N -0.156 5.156 22 C -0.074 4.074 23 C -0.174 4.174 24 C -0.079 4.079 25 C -0.033 4.033 26 O -0.017 6.017 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.148 0.852 31 H 0.141 0.859 32 H 0.189 0.811 33 H 0.178 0.822 34 H 0.163 0.837 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.936 -4.737 4.730 6.759 hybrid contribution -0.325 1.532 -0.476 1.636 sum 0.611 -3.205 4.254 5.361 Atomic orbital electron populations 1.69933 1.05866 1.27197 1.49319 1.24833 0.94802 0.99001 0.94545 0.86519 0.80248 0.83376 0.77858 1.19657 1.20719 1.20778 1.21348 0.93425 0.90009 1.52579 0.92010 1.19998 0.87267 0.81769 1.00024 1.48127 1.45237 1.34369 1.03529 1.22524 0.98038 0.93537 0.90558 1.21442 0.82261 0.84743 0.73949 1.93211 1.40167 1.86747 1.95807 1.93155 1.91921 1.84617 1.47131 1.93199 1.96401 1.68086 1.58476 1.16800 0.81264 0.81284 0.81813 1.90819 1.32071 1.31559 1.86174 1.21869 0.95821 0.90209 0.95198 1.22299 1.02752 1.01677 0.88367 1.20627 0.99377 0.96853 0.90333 1.66964 1.18461 1.22239 1.07931 1.22693 0.93496 0.90971 1.00231 1.21980 1.01217 1.00946 0.93224 1.20609 0.97422 0.96222 0.93657 1.20820 0.99972 0.98469 0.84037 1.84858 1.53239 1.40756 1.22798 0.92520 0.93189 0.92245 0.85202 0.85883 0.81059 0.82162 0.83678 0.83374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.03 13.29 55.43 0.74 -22.30 16 2 C 0.07 1.80 5.46 -17.82 -0.10 1.71 16 3 Si 0.89 19.80 29.54 -169.99 -5.02 14.78 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.54 -13.13 8.42 -34.44 -0.29 -13.41 16 8 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 9 C 0.23 5.11 4.49 -5.20 -0.02 5.09 16 10 N -0.58 -11.49 2.39 -176.43 -0.42 -11.91 16 11 C 0.08 1.29 5.44 -4.04 -0.02 1.26 16 12 C 0.43 6.96 3.29 37.15 0.12 7.09 16 13 F -0.18 -3.12 16.26 2.25 0.04 -3.08 16 14 F -0.19 -2.74 17.32 2.25 0.04 -2.70 16 15 F -0.18 -3.17 16.55 2.25 0.04 -3.13 16 16 C 0.60 12.13 7.16 -12.64 -0.09 12.04 16 17 O -0.53 -10.84 16.09 5.25 0.08 -10.76 16 18 C 0.02 0.44 6.72 -36.85 -0.25 0.19 16 19 C -0.13 -2.34 10.81 -37.18 -0.40 -2.75 16 20 C 0.06 1.04 7.52 -83.18 -0.63 0.41 16 21 N -0.45 -7.35 10.41 -9.87 -0.10 -7.45 16 22 C 0.09 1.18 11.17 -17.49 -0.20 0.99 16 23 C -0.15 -1.88 10.09 -39.36 -0.40 -2.27 16 24 C -0.05 -0.82 10.19 -39.20 -0.40 -1.22 16 25 C 0.02 0.35 7.42 -38.27 -0.28 0.07 16 26 O -0.12 -2.51 6.42 3.35 0.02 -2.49 16 27 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 28 H 0.05 1.17 7.31 -51.92 -0.38 0.79 16 29 H 0.06 1.44 5.36 -51.93 -0.28 1.16 16 30 H 0.13 1.87 8.08 -51.93 -0.42 1.46 16 31 H 0.12 1.81 7.34 -51.92 -0.38 1.43 16 32 H 0.17 2.75 8.06 -52.49 -0.42 2.33 16 33 H 0.16 1.42 8.06 -52.49 -0.42 0.99 16 34 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.15 2.22 8.06 -52.48 -0.42 1.79 16 LS Contribution 324.22 15.07 4.89 4.89 Total: -1.00 -28.80 324.22 -5.35 -34.15 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -2.70 Total: 0.81 kcal Atomic # 6 Polarization: 12.14 SS G_CDS: -2.95 Total: 9.19 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: 0.21 Total: -41.66 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.11 Total: -13.25 kcal Atomic # 9 Polarization: -9.02 SS G_CDS: 0.11 Total: -8.91 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.80 -5.35 -34.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933807375.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.910 kcal (2) G-P(sol) polarization free energy of solvation -28.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds