Wall clock time and date at job start Tue Mar 31 2020 15:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99830 * 2 1 4 4 H 1.48500 * 109.47209 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46784 * 299.99674 * 3 2 1 6 6 H 1.48494 * 109.47499 * 59.99377 * 3 2 1 7 7 C 1.37875 * 120.00202 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99900 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00069 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47179 * 179.97438 * 9 7 2 11 11 C 1.46507 * 119.99908 * 263.57440 * 10 9 7 12 12 C 1.52994 * 109.47046 * 270.94421 * 11 10 9 13 13 F 1.39900 * 109.47433 * 60.00274 * 12 11 10 14 14 F 1.39902 * 109.47054 * 180.02562 * 12 11 10 15 15 F 1.39899 * 109.47375 * 299.99730 * 12 11 10 16 16 C 1.34772 * 119.99980 * 83.57963 * 10 9 7 17 17 O 1.21628 * 119.99735 * 184.06904 * 16 10 9 18 18 C 1.47167 * 120.00252 * 4.06199 * 16 10 9 19 19 C 1.35758 * 125.13351 * 173.79154 * 18 16 10 20 20 C 1.46418 * 106.13703 * 180.02562 * 19 18 16 21 21 N 1.32944 * 133.88520 * 179.32806 * 20 19 18 22 22 C 1.31431 * 121.38648 * 180.02562 * 21 20 19 23 23 C 1.38861 * 121.18300 * 359.97438 * 22 21 20 24 24 C 1.38215 * 119.70936 * 0.02562 * 23 22 21 25 25 C 1.39298 * 118.33441 * 0.24838 * 24 23 22 26 26 O 1.34590 * 133.42122 * 179.72303 * 25 24 23 27 27 H 0.96998 * 120.00028 * 0.02562 * 1 2 3 28 28 H 1.09008 * 109.46561 * 60.00066 * 9 7 2 29 29 H 1.08995 * 109.47554 * 300.00104 * 9 7 2 30 30 H 1.08996 * 109.47361 * 30.94699 * 11 10 9 31 31 H 1.09009 * 109.46497 * 150.94679 * 11 10 9 32 32 H 1.07999 * 126.92628 * 359.44941 * 19 18 16 33 33 H 1.07995 * 119.40795 * 179.97438 * 22 21 20 34 34 H 1.07998 * 120.14870 * 179.97438 * 23 22 21 35 35 H 1.08004 * 120.83098 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3966 1.2123 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6125 0.0005 11 6 2.5713 -4.2616 -1.2603 12 6 1.5957 -5.4041 -1.5496 13 9 0.2968 -4.8942 -1.6495 14 9 1.9476 -6.0242 -2.7533 15 9 1.6511 -6.3390 -0.5103 16 6 2.7403 -4.0399 1.1604 17 8 3.5858 -4.9142 1.1533 18 6 2.3039 -3.4486 2.4354 19 6 2.6831 -3.8781 3.6662 20 6 2.0099 -3.0031 4.6279 21 7 1.9835 -2.9406 5.9556 22 6 1.2752 -2.0291 6.5840 23 6 0.5252 -1.0929 5.8844 24 6 0.5186 -1.1148 4.5025 25 6 1.2704 -2.0913 3.8531 26 8 1.4762 -2.3907 2.5572 27 1 -0.4850 0.8400 -0.0004 28 1 0.6248 -2.5570 -0.8898 29 1 0.6241 -2.5567 0.8902 30 1 2.5282 -3.5332 -2.0700 31 1 3.5834 -4.6589 -1.1824 32 1 3.3406 -4.7050 3.8907 33 1 1.2765 -2.0078 7.6637 34 1 -0.0511 -0.3515 6.4178 35 1 -0.0585 -0.3955 3.9403 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933807375.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:31 Heat of formation + Delta-G solvation = -152.501683 kcal Electronic energy + Delta-G solvation = -28615.851772 eV Core-core repulsion = 23972.455580 eV Total energy + Delta-G solvation = -4643.396192 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.11455 -48.62791 -48.60869 -43.70215 -40.95866 -39.71360 -37.25035 -34.70159 -34.18719 -32.51759 -31.88934 -30.53134 -28.90461 -26.21171 -25.10213 -24.47154 -24.06260 -22.63258 -21.31887 -19.79023 -19.57103 -19.16035 -18.92702 -18.57897 -18.11992 -17.52316 -17.35402 -17.07745 -16.69345 -16.18255 -15.81579 -15.50618 -15.48653 -15.04445 -15.00572 -14.78296 -14.75783 -14.69404 -14.43439 -14.32851 -14.17712 -14.02524 -13.61172 -13.53885 -13.42953 -13.07329 -12.87383 -12.57379 -12.18965 -11.80721 -11.60986 -11.55329 -10.60846 -10.49179 -10.09809 -9.97298 -9.63028 -8.20256 -6.31661 -0.61880 0.14790 0.63630 1.30747 1.37491 1.42405 1.50783 1.58168 1.86192 2.02223 2.39623 2.72826 2.79354 2.83844 3.02062 3.12603 3.26298 3.39387 3.57574 3.83548 3.94166 4.06990 4.24554 4.29486 4.33457 4.52884 4.56748 4.76081 5.02280 5.08052 5.24503 5.34043 5.47112 5.69164 5.87707 5.99153 6.07691 6.68137 6.79882 6.81280 7.36900 8.87446 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.010188 B = 0.005839 C = 0.004158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.584775 B = 4794.176051 C = 6732.302298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.034 3.966 3 Si 0.946 3.054 4 H -0.275 1.275 5 H -0.276 1.276 6 H -0.278 1.278 7 C -0.537 4.537 8 H 0.052 0.948 9 C 0.245 3.755 10 N -0.587 5.587 11 C 0.076 3.924 12 C 0.438 3.562 13 F -0.187 7.187 14 F -0.174 7.174 15 F -0.189 7.189 16 C 0.600 3.400 17 O -0.537 6.537 18 C -0.013 4.013 19 C -0.117 4.117 20 C 0.036 3.964 21 N -0.466 5.466 22 C 0.102 3.898 23 C -0.123 4.123 24 C -0.074 4.074 25 C -0.011 4.011 26 O -0.146 6.146 27 H 0.267 0.733 28 H 0.039 0.961 29 H 0.042 0.958 30 H 0.147 0.853 31 H 0.139 0.861 32 H 0.186 0.814 33 H 0.210 0.790 34 H 0.196 0.804 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.416 -2.948 6.368 7.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.168 4.168 3 Si 0.772 3.228 4 H -0.200 1.200 5 H -0.202 1.202 6 H -0.204 1.204 7 C -0.575 4.575 8 H 0.070 0.930 9 C 0.126 3.874 10 N -0.316 5.316 11 C -0.049 4.049 12 C 0.382 3.618 13 F -0.169 7.169 14 F -0.156 7.156 15 F -0.170 7.170 16 C 0.388 3.612 17 O -0.417 6.417 18 C -0.065 4.065 19 C -0.139 4.139 20 C -0.091 4.091 21 N -0.176 5.176 22 C -0.065 4.065 23 C -0.142 4.142 24 C -0.101 4.101 25 C -0.062 4.062 26 O -0.045 6.045 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.165 0.835 31 H 0.157 0.843 32 H 0.203 0.797 33 H 0.227 0.773 34 H 0.213 0.787 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.053 -3.795 6.488 7.590 hybrid contribution -0.410 1.257 -0.841 1.567 sum 0.643 -2.539 5.647 6.225 Atomic orbital electron populations 1.70013 1.06888 1.27898 1.50217 1.25429 0.95421 1.01531 0.94385 0.85698 0.78896 0.80288 0.77956 1.19951 1.20199 1.20415 1.21464 0.92979 0.91058 1.52017 0.92971 1.19564 0.87215 0.82055 0.98548 1.48027 1.44864 1.34023 1.04732 1.22774 0.98696 0.93828 0.89610 1.21342 0.81772 0.84562 0.74079 1.93194 1.40938 1.86896 1.95862 1.93177 1.91748 1.84374 1.46294 1.93183 1.96403 1.68413 1.59050 1.16898 0.81063 0.81133 0.82103 1.90789 1.32485 1.32005 1.86435 1.21896 0.97603 0.91362 0.95638 1.22544 1.01816 1.01393 0.88098 1.20658 1.00147 0.97175 0.91163 1.67040 1.19801 1.23828 1.06900 1.23630 0.91277 0.89205 1.02369 1.22566 0.99406 1.00621 0.91597 1.20967 0.97748 0.96020 0.95324 1.21364 1.01442 0.99997 0.83432 1.84755 1.53963 1.41379 1.24373 0.92354 0.94340 0.94011 0.83543 0.84287 0.79690 0.77326 0.78714 0.83428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.01 13.29 21.45 0.28 -47.72 16 2 C 0.03 1.69 5.46 84.65 0.46 2.15 16 3 Si 0.95 40.60 29.54 68.60 2.03 42.63 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 6 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.54 -26.83 8.42 25.60 0.22 -26.62 16 8 H 0.05 2.66 7.81 -2.91 -0.02 2.64 16 9 C 0.25 11.40 4.49 85.63 0.38 11.78 16 10 N -0.59 -23.68 2.39 -830.35 -1.99 -25.66 16 11 C 0.08 2.44 5.44 86.38 0.47 2.91 16 12 C 0.44 14.07 3.29 71.98 0.24 14.31 16 13 F -0.19 -6.64 16.26 44.97 0.73 -5.91 16 14 F -0.17 -4.96 17.32 44.97 0.78 -4.18 16 15 F -0.19 -6.67 16.55 44.97 0.74 -5.93 16 16 C 0.60 24.89 7.16 86.59 0.62 25.51 16 17 O -0.54 -22.39 16.09 -4.12 -0.07 -22.45 16 18 C -0.01 -0.52 6.72 24.04 0.16 -0.36 16 19 C -0.12 -4.34 10.81 23.83 0.26 -4.08 16 20 C 0.04 1.31 7.52 41.70 0.31 1.62 16 21 N -0.47 -14.43 10.41 -185.15 -1.93 -16.36 16 22 C 0.10 2.21 11.17 84.90 0.95 3.15 16 23 C -0.12 -2.52 10.09 22.41 0.23 -2.29 16 24 C -0.07 -2.24 10.19 22.52 0.23 -2.01 16 25 C -0.01 -0.43 7.42 23.12 0.17 -0.26 16 26 O -0.15 -6.42 6.42 -10.93 -0.07 -6.49 16 27 H 0.27 13.32 8.31 -92.71 -0.77 12.55 16 28 H 0.04 1.86 7.31 -2.38 -0.02 1.84 16 29 H 0.04 2.14 5.36 -2.39 -0.01 2.12 16 30 H 0.15 4.17 8.08 -2.39 -0.02 4.15 16 31 H 0.14 4.02 7.34 -2.38 -0.02 4.00 16 32 H 0.19 6.03 8.06 -2.91 -0.02 6.01 16 33 H 0.21 2.43 8.06 -2.91 -0.02 2.41 16 34 H 0.20 2.06 8.06 -2.91 -0.02 2.03 16 35 H 0.15 4.37 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -63.56 324.22 6.38 -57.18 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: 1.17 Total: 9.09 kcal Atomic # 6 Polarization: 21.13 SS G_CDS: 4.70 Total: 25.82 kcal Atomic # 7 Polarization: -86.12 SS G_CDS: -3.63 Total: -89.75 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -0.14 Total: -28.95 kcal Atomic # 9 Polarization: -18.28 SS G_CDS: 2.25 Total: -16.03 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.63 kcal Total: -63.56 6.38 -57.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933807375.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.324 kcal (2) G-P(sol) polarization free energy of solvation -63.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds