Wall clock time and date at job start Tue Mar 31 2020 15:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99597 * 2 1 4 4 H 1.48497 * 109.46976 * 239.99514 * 3 2 1 5 5 H 1.48496 * 109.47115 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47149 * 119.99614 * 3 2 1 7 7 C 1.38808 * 120.00443 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00567 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99866 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99977 * 179.97438 * 9 7 2 11 11 H 1.09002 * 110.64129 * 34.30074 * 10 9 7 12 12 C 1.55162 * 110.72003 * 271.15847 * 10 9 7 13 13 C 1.54912 * 101.57717 * 205.95874 * 12 10 9 14 14 N 1.47422 * 104.83500 * 37.00946 * 13 12 10 15 15 C 1.34776 * 125.64498 * 155.91583 * 14 13 12 16 16 O 1.21284 * 119.99888 * 179.97438 * 15 14 13 17 17 C 1.50700 * 120.00311 * 359.97438 * 15 14 13 18 18 C 1.53000 * 109.47003 * 179.97438 * 17 15 14 19 19 C 1.50700 * 109.47003 * 179.97438 * 18 17 15 20 20 C 1.33401 * 125.19786 * 89.72017 * 19 18 17 21 21 C 1.38486 * 114.91431 * 179.83725 * 20 19 18 22 22 Cl 1.73587 * 122.55096 * 180.21354 * 21 20 19 23 23 C 1.33441 * 114.89535 * 0.45346 * 21 20 19 24 24 S 1.75881 * 109.60254 * 359.75944 * 23 21 20 25 25 C 1.47018 * 108.70074 * 335.87099 * 14 13 12 26 26 H 0.96997 * 120.00308 * 0.02562 * 1 2 3 27 27 H 0.96999 * 119.99735 * 0.02562 * 9 7 2 28 28 H 1.08999 * 111.00577 * 324.02906 * 12 10 9 29 29 H 1.09004 * 111.00046 * 87.84884 * 12 10 9 30 30 H 1.09003 * 110.36123 * 155.85332 * 13 12 10 31 31 H 1.08998 * 110.36411 * 278.05837 * 13 12 10 32 32 H 1.09006 * 109.46983 * 299.99944 * 17 15 14 33 33 H 1.08992 * 109.47043 * 60.00012 * 17 15 14 34 34 H 1.08988 * 109.47193 * 299.99870 * 18 17 15 35 35 H 1.09000 * 109.47171 * 60.00458 * 18 17 15 36 36 H 1.08000 * 122.54088 * 0.02562 * 20 19 18 37 37 H 1.08001 * 125.19792 * 179.75820 * 23 21 20 38 38 H 1.09001 * 109.88087 * 241.63802 * 25 14 13 39 39 H 1.09003 * 109.87911 * 120.47955 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2850 2.7464 -0.0006 6 1 3.1038 1.6966 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0583 -3.6567 0.0005 11 1 2.9801 -3.5681 0.5754 12 6 2.3582 -4.1175 -1.4504 13 6 2.4728 -5.6520 -1.2719 14 7 1.4524 -5.9920 -0.2637 15 6 0.8677 -7.1970 -0.1134 16 8 0.0371 -7.3640 0.7545 17 6 1.2460 -8.3369 -1.0237 18 6 0.4427 -9.5821 -0.6424 19 6 0.8205 -10.7218 -1.5531 20 6 1.8032 -11.5948 -1.3253 21 6 1.9633 -12.5614 -2.3040 22 17 3.1777 -13.7979 -2.2057 23 6 1.1163 -12.4668 -3.3308 24 16 0.0380 -11.0997 -3.0823 25 6 1.1791 -4.7993 0.5512 26 1 -0.4850 0.8400 -0.0004 27 1 0.3557 -2.3881 -0.0002 28 1 1.5361 -3.8623 -2.1192 29 1 3.2965 -3.6940 -1.8087 30 1 2.2609 -6.1601 -2.2127 31 1 3.4668 -5.9189 -0.9130 32 1 1.0273 -8.0651 -2.0564 33 1 2.3106 -8.5462 -0.9206 34 1 0.6617 -9.8536 0.3901 35 1 -0.6221 -9.3731 -0.7452 36 1 2.4246 -11.5528 -0.4430 37 1 1.0961 -13.1286 -4.1841 38 1 1.4351 -4.9951 1.5925 39 1 0.1263 -4.5287 0.4708 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970120604.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:47 Heat of formation + Delta-G solvation = -1.170055 kcal Electronic energy + Delta-G solvation = -22108.530166 eV Core-core repulsion = 18589.706062 eV Total energy + Delta-G solvation = -3518.824103 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.94698 -38.68137 -37.44211 -36.55610 -34.17386 -33.81736 -31.57399 -29.63754 -29.36257 -27.73565 -25.50041 -23.75348 -22.98163 -22.36843 -20.09799 -19.75936 -19.04512 -17.92792 -17.43359 -16.81866 -16.23777 -16.08648 -15.43121 -14.97375 -14.44945 -14.16612 -13.88226 -13.60235 -13.49055 -13.34136 -13.03115 -12.91135 -12.71305 -12.49067 -12.24595 -11.85740 -11.70589 -11.57206 -11.53102 -11.38184 -11.21031 -11.01172 -10.86204 -10.74318 -10.37677 -10.14444 -9.82974 -9.74093 -9.12546 -8.99753 -8.78755 -8.45449 -7.08169 -5.84984 -3.16006 0.43108 0.90665 1.31826 2.06538 2.20673 2.71038 3.10450 3.39291 3.44037 3.45154 4.22640 4.51747 4.55286 4.70421 4.77020 4.83164 4.97166 5.00768 5.22633 5.26339 5.34917 5.37034 5.52057 5.56596 5.56980 5.67476 5.72913 5.77359 5.88803 5.92594 6.10529 6.21400 6.33550 6.52518 6.56519 6.85975 7.61564 7.67920 8.24943 8.32398 9.43646 9.97714 10.32285 11.37040 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.029937 B = 0.001924 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.071174 B =14550.736280 C =14754.284974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.246 4.246 8 H 0.072 0.928 9 N -0.715 5.715 10 C 0.172 3.828 11 H 0.065 0.935 12 C -0.155 4.155 13 C 0.097 3.903 14 N -0.612 5.612 15 C 0.524 3.476 16 O -0.547 6.547 17 C -0.131 4.131 18 C -0.035 4.035 19 C -0.158 4.158 20 C -0.137 4.137 21 C -0.041 4.041 22 Cl -0.054 7.054 23 C -0.219 4.219 24 S 0.149 5.851 25 C 0.100 3.900 26 H 0.257 0.743 27 H 0.386 0.614 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.151 0.849 37 H 0.173 0.827 38 H 0.065 0.935 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.479 -26.491 -7.335 27.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.377 4.377 8 H 0.090 0.910 9 N -0.356 5.356 10 C 0.060 3.940 11 H 0.083 0.917 12 C -0.197 4.197 13 C -0.026 4.026 14 N -0.346 5.346 15 C 0.313 3.687 16 O -0.425 6.425 17 C -0.171 4.171 18 C -0.075 4.075 19 C -0.276 4.276 20 C -0.167 4.167 21 C -0.081 4.081 22 Cl -0.026 7.026 23 C -0.355 4.355 24 S 0.412 5.588 25 C -0.023 4.023 26 H 0.067 0.933 27 H 0.221 0.779 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.106 0.894 36 H 0.168 0.832 37 H 0.191 0.809 38 H 0.084 0.916 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.012 -25.958 -7.662 27.232 hybrid contribution 1.534 0.142 0.557 1.638 sum 4.546 -25.816 -7.105 27.159 Atomic orbital electron populations 1.69653 1.05169 1.26046 1.56847 1.24785 0.95541 0.97862 1.02483 0.86235 0.78514 0.83310 0.77886 1.21175 1.21655 1.21151 1.19164 0.91019 0.83803 1.43749 0.90994 1.42357 1.05808 0.99363 1.88067 1.21182 0.94348 0.85703 0.92794 0.91695 1.23577 1.02780 0.91610 1.01710 1.22415 0.91152 0.97895 0.91126 1.48504 1.41017 1.10250 1.34801 1.20163 0.81086 0.82558 0.84918 1.90711 1.33481 1.82744 1.35571 1.21646 1.02277 0.92903 1.00316 1.19933 1.01030 0.88821 0.97695 1.24512 1.00714 1.02380 0.99972 1.19881 1.00479 0.95190 1.01166 1.19780 0.95874 0.95246 0.97157 1.98372 1.53878 1.52123 1.98220 1.25575 1.01578 1.04573 1.03784 1.84554 1.34220 1.23484 1.16548 1.22317 1.01165 0.84384 0.94475 0.93272 0.77940 0.90633 0.90499 0.91294 0.91538 0.88731 0.88541 0.88647 0.89415 0.83171 0.80940 0.91632 0.91099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.45 13.06 55.49 0.72 -26.72 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 21.73 29.55 -169.99 -5.02 16.70 16 4 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.25 -6.54 9.97 -15.06 -0.15 -6.69 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.72 -17.16 5.24 -51.65 -0.27 -17.43 16 10 C 0.17 3.19 3.59 -66.10 -0.24 2.95 16 11 H 0.07 1.20 8.11 -51.93 -0.42 0.78 16 12 C -0.16 -2.41 6.77 -24.58 -0.17 -2.58 16 13 C 0.10 1.18 6.69 -2.53 -0.02 1.16 16 14 N -0.61 -8.92 3.33 -170.52 -0.57 -9.48 16 15 C 0.52 7.43 7.85 -10.99 -0.09 7.35 16 16 O -0.55 -9.74 16.31 5.55 0.09 -9.65 16 17 C -0.13 -1.25 4.69 -27.88 -0.13 -1.39 16 18 C -0.04 -0.32 5.00 -27.88 -0.14 -0.46 16 19 C -0.16 -1.31 5.76 -36.00 -0.21 -1.52 16 20 C -0.14 -1.13 9.94 -41.18 -0.41 -1.54 16 21 C -0.04 -0.34 6.27 -41.17 -0.26 -0.60 16 22 Cl -0.05 -0.43 29.11 -51.86 -1.51 -1.94 16 23 C -0.22 -1.60 11.08 29.05 0.32 -1.28 16 24 S 0.15 1.11 23.33 -107.50 -2.51 -1.39 16 25 C 0.10 1.73 6.62 -3.07 -0.02 1.71 16 26 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.39 10.00 7.55 -40.82 -0.31 9.69 16 28 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.07 0.68 7.48 -51.93 -0.39 0.29 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.09 0.80 7.85 -51.93 -0.41 0.39 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.10 0.91 8.10 -51.94 -0.42 0.49 16 35 H 0.09 0.87 8.10 -51.93 -0.42 0.45 16 36 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.07 1.36 7.71 -51.93 -0.40 0.96 16 LS Contribution 358.82 15.07 5.41 5.41 Total: -1.00 -30.84 358.82 -10.52 -41.37 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -5.27 Total: 6.41 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -1.60 Total: -3.27 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: -0.11 Total: -53.63 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.09 Total: -9.65 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: 1.11 SS G_CDS: -2.51 Total: -1.39 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.51 Total: -1.94 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.84 -10.52 -41.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970120604.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.197 kcal (2) G-P(sol) polarization free energy of solvation -30.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds