Wall clock time and date at job start Tue Mar 31 2020 15:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99597 * 2 1 4 4 H 1.48497 * 109.46976 * 239.99514 * 3 2 1 5 5 H 1.48496 * 109.47115 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47149 * 119.99614 * 3 2 1 7 7 C 1.38808 * 120.00443 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00567 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99866 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99977 * 179.97438 * 9 7 2 11 11 H 1.09002 * 110.64129 * 34.30074 * 10 9 7 12 12 C 1.55162 * 110.72003 * 271.15847 * 10 9 7 13 13 C 1.54912 * 101.57717 * 205.95874 * 12 10 9 14 14 N 1.47422 * 104.83500 * 37.00946 * 13 12 10 15 15 C 1.34776 * 125.64498 * 155.91583 * 14 13 12 16 16 O 1.21284 * 119.99888 * 179.97438 * 15 14 13 17 17 C 1.50700 * 120.00311 * 359.97438 * 15 14 13 18 18 C 1.53000 * 109.47003 * 179.97438 * 17 15 14 19 19 C 1.50700 * 109.47003 * 179.97438 * 18 17 15 20 20 C 1.33401 * 125.19786 * 89.72017 * 19 18 17 21 21 C 1.38486 * 114.91431 * 179.83725 * 20 19 18 22 22 Cl 1.73587 * 122.55096 * 180.21354 * 21 20 19 23 23 C 1.33441 * 114.89535 * 0.45346 * 21 20 19 24 24 S 1.75881 * 109.60254 * 359.75944 * 23 21 20 25 25 C 1.47018 * 108.70074 * 335.87099 * 14 13 12 26 26 H 0.96997 * 120.00308 * 0.02562 * 1 2 3 27 27 H 0.96999 * 119.99735 * 0.02562 * 9 7 2 28 28 H 1.08999 * 111.00577 * 324.02906 * 12 10 9 29 29 H 1.09004 * 111.00046 * 87.84884 * 12 10 9 30 30 H 1.09003 * 110.36123 * 155.85332 * 13 12 10 31 31 H 1.08998 * 110.36411 * 278.05837 * 13 12 10 32 32 H 1.09006 * 109.46983 * 299.99944 * 17 15 14 33 33 H 1.08992 * 109.47043 * 60.00012 * 17 15 14 34 34 H 1.08988 * 109.47193 * 299.99870 * 18 17 15 35 35 H 1.09000 * 109.47171 * 60.00458 * 18 17 15 36 36 H 1.08000 * 122.54088 * 0.02562 * 20 19 18 37 37 H 1.08001 * 125.19792 * 179.75820 * 23 21 20 38 38 H 1.09001 * 109.88087 * 241.63802 * 25 14 13 39 39 H 1.09003 * 109.87911 * 120.47955 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2850 2.7464 -0.0006 6 1 3.1038 1.6966 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0583 -3.6567 0.0005 11 1 2.9801 -3.5681 0.5754 12 6 2.3582 -4.1175 -1.4504 13 6 2.4728 -5.6520 -1.2719 14 7 1.4524 -5.9920 -0.2637 15 6 0.8677 -7.1970 -0.1134 16 8 0.0371 -7.3640 0.7545 17 6 1.2460 -8.3369 -1.0237 18 6 0.4427 -9.5821 -0.6424 19 6 0.8205 -10.7218 -1.5531 20 6 1.8032 -11.5948 -1.3253 21 6 1.9633 -12.5614 -2.3040 22 17 3.1777 -13.7979 -2.2057 23 6 1.1163 -12.4668 -3.3308 24 16 0.0380 -11.0997 -3.0823 25 6 1.1791 -4.7993 0.5512 26 1 -0.4850 0.8400 -0.0004 27 1 0.3557 -2.3881 -0.0002 28 1 1.5361 -3.8623 -2.1192 29 1 3.2965 -3.6940 -1.8087 30 1 2.2609 -6.1601 -2.2127 31 1 3.4668 -5.9189 -0.9130 32 1 1.0273 -8.0651 -2.0564 33 1 2.3106 -8.5462 -0.9206 34 1 0.6617 -9.8536 0.3901 35 1 -0.6221 -9.3731 -0.7452 36 1 2.4246 -11.5528 -0.4430 37 1 1.0961 -13.1286 -4.1841 38 1 1.4351 -4.9951 1.5925 39 1 0.1263 -4.5287 0.4708 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970120604.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:46 Heat of formation + Delta-G solvation = -19.012956 kcal Electronic energy + Delta-G solvation = -22109.303892 eV Core-core repulsion = 18589.706062 eV Total energy + Delta-G solvation = -3519.597830 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.11296 -39.33769 -38.70809 -37.18165 -35.91271 -34.61406 -33.28899 -31.05529 -30.26657 -29.02671 -26.47032 -25.35454 -24.14234 -23.23161 -21.56810 -20.36006 -20.14694 -19.33760 -18.66484 -17.79612 -17.38904 -16.85628 -16.55097 -16.48321 -15.79136 -15.37040 -14.94814 -14.83403 -14.66751 -14.26248 -14.09745 -13.83543 -13.67055 -13.50718 -13.20603 -13.15509 -13.04309 -12.94813 -12.63954 -12.36244 -12.23038 -12.16385 -12.13494 -12.02014 -11.74683 -11.67736 -11.62646 -10.95819 -10.92238 -9.73303 -9.67504 -9.36701 -9.04328 -7.94527 -5.25011 -0.15780 0.33526 0.72828 1.45767 1.49638 1.52483 1.58417 1.60869 1.62664 1.98376 2.57622 3.34382 3.42380 3.76597 3.78990 3.90203 3.98180 4.06638 4.09148 4.23946 4.29881 4.40120 4.43063 4.54299 4.56145 4.68074 4.73100 4.88132 4.96188 5.02333 5.05164 5.09212 5.20627 5.23932 5.28478 5.45564 5.54092 6.25801 6.55831 7.12303 7.32108 8.04423 8.27677 9.28723 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.029937 B = 0.001924 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.071174 B =14550.736280 C =14754.284974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.976 3.024 4 H -0.274 1.274 5 H -0.300 1.300 6 H -0.278 1.278 7 C -0.239 4.239 8 H 0.084 0.916 9 N -0.732 5.732 10 C 0.164 3.836 11 H 0.070 0.930 12 C -0.147 4.147 13 C 0.105 3.895 14 N -0.614 5.614 15 C 0.520 3.480 16 O -0.591 6.591 17 C -0.119 4.119 18 C -0.030 4.030 19 C -0.167 4.167 20 C -0.137 4.137 21 C -0.056 4.056 22 Cl -0.056 7.056 23 C -0.213 4.213 24 S 0.159 5.841 25 C 0.108 3.892 26 H 0.250 0.750 27 H 0.371 0.629 28 H 0.055 0.945 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.114 0.886 33 H 0.123 0.877 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.157 0.843 37 H 0.190 0.810 38 H 0.060 0.940 39 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.648 -28.084 -8.794 30.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.804 3.196 4 H -0.200 1.200 5 H -0.227 1.227 6 H -0.204 1.204 7 C -0.371 4.371 8 H 0.102 0.898 9 N -0.371 5.371 10 C 0.055 3.945 11 H 0.088 0.912 12 C -0.188 4.188 13 C -0.016 4.016 14 N -0.347 5.347 15 C 0.311 3.689 16 O -0.472 6.472 17 C -0.158 4.158 18 C -0.070 4.070 19 C -0.285 4.285 20 C -0.167 4.167 21 C -0.096 4.096 22 Cl -0.027 7.027 23 C -0.349 4.349 24 S 0.423 5.577 25 C -0.016 4.016 26 H 0.059 0.941 27 H 0.203 0.797 28 H 0.074 0.926 29 H 0.107 0.893 30 H 0.121 0.879 31 H 0.114 0.886 32 H 0.132 0.868 33 H 0.141 0.859 34 H 0.107 0.893 35 H 0.094 0.906 36 H 0.175 0.825 37 H 0.208 0.792 38 H 0.079 0.921 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 5.248 -27.603 -9.147 29.548 hybrid contribution 0.860 0.517 1.017 1.429 sum 6.109 -27.086 -8.130 28.932 Atomic orbital electron populations 1.69827 1.06793 1.26168 1.59395 1.25619 0.96341 1.01330 1.03698 0.85181 0.77098 0.78964 0.78313 1.20012 1.22682 1.20364 1.19601 0.91660 0.84694 1.41142 0.89814 1.42551 1.05347 1.00786 1.88464 1.21398 0.93982 0.83984 0.95186 0.91162 1.23376 1.02526 0.94434 0.98430 1.22560 0.91786 0.95214 0.92080 1.48604 1.41697 1.09560 1.34882 1.21043 0.79997 0.83077 0.84801 1.90694 1.35384 1.83445 1.37641 1.21664 1.03705 0.90716 0.99761 1.19799 1.00317 0.89141 0.97699 1.24352 1.01258 1.02425 1.00432 1.19999 1.00397 0.94951 1.01361 1.19869 0.96447 0.95607 0.97646 1.98371 1.53955 1.52161 1.98246 1.25850 1.00730 1.04409 1.03957 1.84555 1.33940 1.23394 1.15825 1.21975 0.99206 0.85559 0.94857 0.94086 0.79679 0.92604 0.89268 0.87913 0.88625 0.86816 0.85942 0.89310 0.90616 0.82512 0.79233 0.92143 0.93931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.02 13.06 21.65 0.28 -58.74 16 2 C -0.08 -4.36 5.50 84.86 0.47 -3.89 16 3 Si 0.98 44.95 29.55 68.60 2.03 46.98 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 5 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 6 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 7 C -0.24 -12.72 9.97 84.03 0.84 -11.88 16 8 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 9 N -0.73 -35.70 5.24 -317.33 -1.66 -37.37 16 10 C 0.16 6.01 3.59 46.18 0.17 6.18 16 11 H 0.07 2.51 8.11 -2.39 -0.02 2.49 16 12 C -0.15 -4.26 6.77 31.99 0.22 -4.05 16 13 C 0.11 2.16 6.69 86.86 0.58 2.74 16 14 N -0.61 -16.88 3.33 -811.81 -2.70 -19.58 16 15 C 0.52 14.02 7.85 87.66 0.69 14.71 16 16 O -0.59 -21.16 16.31 -3.04 -0.05 -21.21 16 17 C -0.12 -1.93 4.69 29.85 0.14 -1.79 16 18 C -0.03 -0.50 5.00 29.85 0.15 -0.35 16 19 C -0.17 -2.43 5.76 24.59 0.14 -2.28 16 20 C -0.14 -1.96 9.94 21.23 0.21 -1.75 16 21 C -0.06 -0.80 6.27 21.24 0.13 -0.67 16 22 Cl -0.06 -0.79 29.11 -2.72 -0.08 -0.87 16 23 C -0.21 -2.61 11.08 66.73 0.74 -1.87 16 24 S 0.16 2.04 23.33 -56.49 -1.32 0.72 16 25 C 0.11 3.79 6.62 86.73 0.57 4.36 16 26 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 27 H 0.37 20.03 7.55 -92.71 -0.70 19.33 16 28 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 30 H 0.10 1.51 7.48 -2.39 -0.02 1.49 16 31 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.11 1.48 7.85 -2.38 -0.02 1.46 16 33 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.09 1.61 8.10 -2.39 -0.02 1.59 16 35 H 0.08 1.45 8.10 -2.39 -0.02 1.43 16 36 H 0.16 1.95 8.06 -2.91 -0.02 1.92 16 37 H 0.19 1.56 8.06 -2.91 -0.02 1.53 16 38 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.04 1.72 7.71 -2.39 -0.02 1.70 16 Total: -1.00 -68.51 358.82 1.92 -66.60 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: 0.37 Total: 24.02 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: 5.04 Total: -0.55 kcal Atomic # 7 Polarization: -111.61 SS G_CDS: -4.08 Total: -115.69 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.05 Total: -21.21 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -1.32 Total: 0.72 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -0.08 Total: -0.87 kcal Total: -68.51 1.92 -66.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970120604.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.585 kcal (2) G-P(sol) polarization free energy of solvation -68.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds