Wall clock time and date at job start Tue Mar 31 2020 15:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00068 * 2 1 4 4 H 1.48496 * 109.46998 * 239.99914 * 3 2 1 5 5 H 1.48496 * 109.46928 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47036 * 119.99828 * 3 2 1 7 7 C 1.38811 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00126 * 180.02562 * 7 2 1 9 9 N 1.36947 * 120.00013 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99681 * 179.97438 * 9 7 2 11 11 H 1.08995 * 110.88843 * 37.43118 * 10 9 7 12 12 C 1.55156 * 111.00719 * 273.54317 * 10 9 7 13 13 C 1.54316 * 102.94559 * 206.39051 * 12 10 9 14 14 N 1.47023 * 107.27276 * 22.19474 * 13 12 10 15 15 C 1.34777 * 125.65037 * 181.01937 * 14 13 12 16 16 O 1.21283 * 119.99750 * 180.02562 * 15 14 13 17 17 C 1.50702 * 119.99928 * 0.30479 * 15 14 13 18 18 C 1.52996 * 109.47159 * 179.72352 * 17 15 14 19 19 C 1.50697 * 109.47491 * 179.97438 * 18 17 15 20 20 C 1.33345 * 125.19181 * 89.99394 * 19 18 17 21 21 C 1.38462 * 114.93340 * 180.02562 * 20 19 18 22 22 C 1.33502 * 114.88539 * 0.02562 * 21 20 19 23 23 Cl 1.73602 * 125.21331 * 179.97438 * 22 21 20 24 24 S 1.75880 * 125.18736 * 269.69975 * 19 18 17 25 25 C 1.47423 * 108.69861 * 1.28833 * 14 13 12 26 26 H 0.96990 * 119.99923 * 0.02562 * 1 2 3 27 27 H 0.96996 * 119.99629 * 0.02562 * 9 7 2 28 28 H 1.09004 * 110.71752 * 88.02747 * 12 10 9 29 29 H 1.09001 * 110.72046 * 324.76245 * 12 10 9 30 30 H 1.08997 * 109.88569 * 262.77576 * 13 12 10 31 31 H 1.09005 * 110.00889 * 141.68485 * 13 12 10 32 32 H 1.09004 * 109.46965 * 299.72211 * 17 15 14 33 33 H 1.08994 * 109.46990 * 59.72065 * 17 15 14 34 34 H 1.09004 * 109.47066 * 299.99797 * 18 17 15 35 35 H 1.09000 * 109.47234 * 59.99288 * 18 17 15 36 36 H 1.08004 * 122.53568 * 359.97438 * 20 19 18 37 37 H 1.08006 * 122.56363 * 180.02562 * 21 20 19 38 38 H 1.09004 * 110.36778 * 94.48512 * 25 14 13 39 39 H 1.09006 * 110.36423 * 216.80164 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 2.0582 -3.6568 0.0016 11 1 2.9533 -3.5887 0.6198 12 6 2.4127 -4.0943 -1.4441 13 6 2.5174 -5.6293 -1.3249 14 7 1.7462 -6.0286 -0.1386 15 6 1.6065 -7.2882 0.3201 16 8 0.9433 -7.5019 1.3129 17 6 2.2794 -8.4302 -0.3968 18 6 1.9682 -9.7414 0.3276 19 6 2.6406 -10.8835 -0.3897 20 6 3.8698 -11.3335 -0.1354 21 6 4.2773 -12.3958 -0.9246 22 6 3.3774 -12.8075 -1.8207 23 17 3.6066 -14.1124 -2.9426 24 16 1.9209 -11.8309 -1.6850 25 6 1.1458 -4.8237 0.4624 26 1 -0.4849 0.8400 -0.0004 27 1 0.3556 -2.3881 0.0016 28 1 3.3659 -3.6657 -1.7540 29 1 1.6194 -3.8144 -2.1373 30 1 3.5605 -5.9216 -1.2046 31 1 2.1004 -6.1018 -2.2144 32 1 1.9099 -8.4844 -1.4209 33 1 3.3571 -8.2679 -0.4075 34 1 2.3377 -9.6872 1.3517 35 1 0.8904 -9.9036 0.3384 36 1 4.5002 -10.9016 0.6278 37 1 5.2490 -12.8561 -0.8231 38 1 0.1297 -4.6822 0.0941 39 1 1.1488 -4.9005 1.5497 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970706241.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:50 Heat of formation + Delta-G solvation = -0.490006 kcal Electronic energy + Delta-G solvation = -22029.036794 eV Core-core repulsion = 18510.242179 eV Total energy + Delta-G solvation = -3518.794614 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -39.95540 -38.53599 -37.44287 -36.99998 -34.18522 -33.84641 -31.57654 -29.63702 -29.22369 -27.65276 -25.35070 -23.76703 -23.04391 -22.37259 -20.13920 -19.82802 -19.01876 -17.96900 -17.36617 -16.82795 -16.32607 -16.00664 -15.38040 -15.00994 -14.44311 -14.15346 -13.87507 -13.79087 -13.45166 -13.26402 -13.12744 -12.94646 -12.78812 -12.51995 -12.28470 -11.97140 -11.70719 -11.62821 -11.59577 -11.23109 -11.17982 -11.04117 -10.86962 -10.72459 -10.36271 -10.11680 -9.83873 -9.74707 -8.99076 -8.96196 -8.89810 -8.47304 -7.08679 -5.85434 -3.16398 0.39436 0.70673 1.42662 1.84112 2.19902 2.68943 3.08786 3.39194 3.44086 3.45022 4.24648 4.51650 4.62722 4.76238 4.82145 4.89358 5.00501 5.04140 5.24545 5.28147 5.32929 5.43440 5.53041 5.57254 5.59848 5.71545 5.73222 5.78673 5.93285 5.98793 6.10482 6.19036 6.33346 6.49887 6.56360 6.87024 7.61567 7.66611 8.22793 8.31997 9.43432 9.97183 10.31982 11.36629 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.034299 B = 0.001854 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.146805 B =15101.240799 C =15392.541613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.246 4.246 8 H 0.072 0.928 9 N -0.715 5.715 10 C 0.172 3.828 11 H 0.063 0.937 12 C -0.156 4.156 13 C 0.101 3.899 14 N -0.613 5.613 15 C 0.525 3.475 16 O -0.547 6.547 17 C -0.131 4.131 18 C -0.036 4.036 19 C -0.161 4.161 20 C -0.135 4.135 21 C -0.114 4.114 22 C -0.156 4.156 23 Cl -0.018 7.018 24 S 0.151 5.849 25 C 0.098 3.902 26 H 0.257 0.743 27 H 0.386 0.614 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.069 0.931 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.053 -26.804 -4.969 28.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.206 4.206 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.377 4.377 8 H 0.090 0.910 9 N -0.356 5.356 10 C 0.060 3.940 11 H 0.081 0.919 12 C -0.197 4.197 13 C -0.023 4.023 14 N -0.347 5.347 15 C 0.314 3.686 16 O -0.426 6.426 17 C -0.171 4.171 18 C -0.075 4.075 19 C -0.279 4.279 20 C -0.164 4.164 21 C -0.146 4.146 22 C -0.300 4.300 23 Cl 0.010 6.990 24 S 0.414 5.586 25 C -0.025 4.025 26 H 0.067 0.933 27 H 0.221 0.779 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.167 0.833 37 H 0.166 0.834 38 H 0.087 0.913 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.419 -26.940 -5.260 28.189 hybrid contribution 1.651 0.734 0.328 1.836 sum 8.069 -26.206 -4.933 27.860 Atomic orbital electron populations 1.69649 1.05154 1.26045 1.56888 1.24780 0.95544 0.97840 1.02475 0.86236 0.78524 0.83313 0.77889 1.21168 1.21641 1.21167 1.19158 0.91016 0.83776 1.43720 0.91023 1.42252 1.05827 0.99327 1.88148 1.21338 0.94164 0.85644 0.92856 0.91891 1.23422 1.02894 0.91240 1.02124 1.22121 0.95238 0.97650 0.87273 1.48487 1.50761 1.06305 1.29098 1.20164 0.81213 0.82638 0.84621 1.90709 1.41633 1.83781 1.26429 1.21646 1.02499 0.92339 1.00653 1.19940 1.00967 0.88016 0.98610 1.24683 0.98610 1.02851 1.01736 1.20012 0.96041 0.97924 1.02453 1.20200 1.00751 0.98148 0.95523 1.25248 1.01168 1.00973 1.02598 1.98370 1.96435 1.45054 1.59125 1.84550 1.13972 1.26203 1.33875 1.22585 0.97495 0.83559 0.98816 0.93273 0.77923 0.90682 0.90509 0.91821 0.91984 0.88801 0.88468 0.88562 0.89573 0.83277 0.83425 0.91295 0.90526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.30 13.06 55.49 0.72 -26.58 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 3 Si 0.91 21.70 29.55 -169.99 -5.02 16.67 16 4 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.25 -6.52 9.98 -15.05 -0.15 -6.67 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.72 -17.06 5.28 -51.24 -0.27 -17.33 16 10 C 0.17 3.21 3.70 -65.66 -0.24 2.96 16 11 H 0.06 1.20 8.13 -51.93 -0.42 0.78 16 12 C -0.16 -2.41 6.64 -24.90 -0.17 -2.58 16 13 C 0.10 1.22 6.48 -3.07 -0.02 1.20 16 14 N -0.61 -8.84 3.32 -170.38 -0.57 -9.40 16 15 C 0.53 7.32 7.85 -10.98 -0.09 7.23 16 16 O -0.55 -9.57 16.24 5.55 0.09 -9.48 16 17 C -0.13 -1.23 4.87 -27.88 -0.14 -1.37 16 18 C -0.04 -0.32 5.00 -27.89 -0.14 -0.46 16 19 C -0.16 -1.32 5.76 -36.02 -0.21 -1.52 16 20 C -0.13 -1.00 10.05 -41.21 -0.41 -1.41 16 21 C -0.11 -0.85 10.13 -41.16 -0.42 -1.26 16 22 C -0.16 -1.29 7.10 29.08 0.21 -1.08 16 23 Cl -0.02 -0.14 29.29 -51.86 -1.52 -1.66 16 24 S 0.15 1.24 23.33 -107.50 -2.51 -1.27 16 25 C 0.10 1.69 6.53 -2.41 -0.02 1.67 16 26 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 27 H 0.39 9.86 7.71 -40.82 -0.31 9.55 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.10 0.89 8.10 -51.93 -0.42 0.47 16 35 H 0.09 0.84 8.10 -51.93 -0.42 0.42 16 36 H 0.15 0.87 8.06 -52.48 -0.42 0.44 16 37 H 0.15 0.84 8.06 -52.48 -0.42 0.42 16 38 H 0.07 1.23 8.01 -51.93 -0.42 0.82 16 39 H 0.08 1.39 8.03 -51.93 -0.42 0.97 16 LS Contribution 360.17 15.07 5.43 5.43 Total: -1.00 -30.57 360.17 -10.87 -41.44 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -5.34 Total: 5.82 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -1.88 Total: -3.65 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: -0.11 Total: -53.31 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.09 Total: -9.48 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -2.51 Total: -1.27 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -1.52 Total: -1.66 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.57 -10.87 -41.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970706241.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.948 kcal (2) G-P(sol) polarization free energy of solvation -30.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds