Wall clock time and date at job start Tue Mar 31 2020 15:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00068 * 2 1 4 4 H 1.48496 * 109.46998 * 239.99914 * 3 2 1 5 5 H 1.48496 * 109.46928 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47036 * 119.99828 * 3 2 1 7 7 C 1.38811 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00126 * 180.02562 * 7 2 1 9 9 N 1.36947 * 120.00013 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99681 * 179.97438 * 9 7 2 11 11 H 1.08995 * 110.88843 * 37.43118 * 10 9 7 12 12 C 1.55156 * 111.00719 * 273.54317 * 10 9 7 13 13 C 1.54316 * 102.94559 * 206.39051 * 12 10 9 14 14 N 1.47023 * 107.27276 * 22.19474 * 13 12 10 15 15 C 1.34777 * 125.65037 * 181.01937 * 14 13 12 16 16 O 1.21283 * 119.99750 * 180.02562 * 15 14 13 17 17 C 1.50702 * 119.99928 * 0.30479 * 15 14 13 18 18 C 1.52996 * 109.47159 * 179.72352 * 17 15 14 19 19 C 1.50697 * 109.47491 * 179.97438 * 18 17 15 20 20 C 1.33345 * 125.19181 * 89.99394 * 19 18 17 21 21 C 1.38462 * 114.93340 * 180.02562 * 20 19 18 22 22 C 1.33502 * 114.88539 * 0.02562 * 21 20 19 23 23 Cl 1.73602 * 125.21331 * 179.97438 * 22 21 20 24 24 S 1.75880 * 125.18736 * 269.69975 * 19 18 17 25 25 C 1.47423 * 108.69861 * 1.28833 * 14 13 12 26 26 H 0.96990 * 119.99923 * 0.02562 * 1 2 3 27 27 H 0.96996 * 119.99629 * 0.02562 * 9 7 2 28 28 H 1.09004 * 110.71752 * 88.02747 * 12 10 9 29 29 H 1.09001 * 110.72046 * 324.76245 * 12 10 9 30 30 H 1.08997 * 109.88569 * 262.77576 * 13 12 10 31 31 H 1.09005 * 110.00889 * 141.68485 * 13 12 10 32 32 H 1.09004 * 109.46965 * 299.72211 * 17 15 14 33 33 H 1.08994 * 109.46990 * 59.72065 * 17 15 14 34 34 H 1.09004 * 109.47066 * 299.99797 * 18 17 15 35 35 H 1.09000 * 109.47234 * 59.99288 * 18 17 15 36 36 H 1.08004 * 122.53568 * 359.97438 * 20 19 18 37 37 H 1.08006 * 122.56363 * 180.02562 * 21 20 19 38 38 H 1.09004 * 110.36778 * 94.48512 * 25 14 13 39 39 H 1.09006 * 110.36423 * 216.80164 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 2.0582 -3.6568 0.0016 11 1 2.9533 -3.5887 0.6198 12 6 2.4127 -4.0943 -1.4441 13 6 2.5174 -5.6293 -1.3249 14 7 1.7462 -6.0286 -0.1386 15 6 1.6065 -7.2882 0.3201 16 8 0.9433 -7.5019 1.3129 17 6 2.2794 -8.4302 -0.3968 18 6 1.9682 -9.7414 0.3276 19 6 2.6406 -10.8835 -0.3897 20 6 3.8698 -11.3335 -0.1354 21 6 4.2773 -12.3958 -0.9246 22 6 3.3774 -12.8075 -1.8207 23 17 3.6066 -14.1124 -2.9426 24 16 1.9209 -11.8309 -1.6850 25 6 1.1458 -4.8237 0.4624 26 1 -0.4849 0.8400 -0.0004 27 1 0.3556 -2.3881 0.0016 28 1 3.3659 -3.6657 -1.7540 29 1 1.6194 -3.8144 -2.1373 30 1 3.5605 -5.9216 -1.2046 31 1 2.1004 -6.1018 -2.2144 32 1 1.9099 -8.4844 -1.4209 33 1 3.3571 -8.2679 -0.4075 34 1 2.3377 -9.6872 1.3517 35 1 0.8904 -9.9036 0.3384 36 1 4.5002 -10.9016 0.6278 37 1 5.2490 -12.8561 -0.8231 38 1 0.1297 -4.6822 0.0941 39 1 1.1488 -4.9005 1.5497 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970706241.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:49 Heat of formation + Delta-G solvation = -17.862138 kcal Electronic energy + Delta-G solvation = -22029.790106 eV Core-core repulsion = 18510.242179 eV Total energy + Delta-G solvation = -3519.547927 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.10733 -39.19897 -38.65921 -37.62687 -35.91922 -34.63472 -33.28619 -31.06725 -30.14834 -28.90618 -26.32376 -25.31542 -24.17631 -23.25006 -21.61394 -20.40893 -20.11840 -19.27323 -18.70000 -17.81660 -17.48785 -16.80275 -16.49216 -16.37932 -15.81556 -15.40427 -14.90532 -14.74946 -14.57040 -14.39523 -14.26183 -13.92691 -13.67044 -13.45896 -13.29715 -13.17976 -13.04086 -12.99363 -12.62684 -12.35448 -12.29245 -12.25009 -12.13977 -11.85110 -11.75444 -11.64520 -11.58981 -10.95157 -10.92530 -9.66451 -9.55978 -9.50210 -9.04423 -7.94564 -5.24853 -0.19932 0.11676 0.84448 1.25304 1.49753 1.52521 1.58420 1.60966 1.63167 1.97845 2.57866 3.33922 3.43944 3.73155 3.83516 3.93303 4.01792 4.07855 4.23439 4.27980 4.33503 4.37141 4.49093 4.52882 4.61369 4.75014 4.81420 4.87430 4.99680 5.02771 5.08260 5.17725 5.23378 5.26722 5.41564 5.44047 5.54699 6.26037 6.55877 7.12204 7.32700 8.04692 8.28273 9.28543 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.034299 B = 0.001854 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.146805 B =15101.240799 C =15392.541613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.076 4.076 3 Si 0.975 3.025 4 H -0.274 1.274 5 H -0.299 1.299 6 H -0.279 1.279 7 C -0.240 4.240 8 H 0.082 0.918 9 N -0.731 5.731 10 C 0.165 3.835 11 H 0.062 0.938 12 C -0.146 4.146 13 C 0.107 3.893 14 N -0.614 5.614 15 C 0.522 3.478 16 O -0.589 6.589 17 C -0.119 4.119 18 C -0.030 4.030 19 C -0.166 4.166 20 C -0.129 4.129 21 C -0.113 4.113 22 C -0.167 4.167 23 Cl -0.019 7.019 24 S 0.138 5.862 25 C 0.107 3.893 26 H 0.251 0.749 27 H 0.373 0.627 28 H 0.085 0.915 29 H 0.060 0.940 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.112 0.888 33 H 0.123 0.877 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.168 0.832 37 H 0.166 0.834 38 H 0.055 0.945 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.617 -28.191 -5.940 30.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.804 3.196 4 H -0.200 1.200 5 H -0.226 1.226 6 H -0.205 1.205 7 C -0.372 4.372 8 H 0.100 0.900 9 N -0.370 5.370 10 C 0.055 3.945 11 H 0.080 0.920 12 C -0.187 4.187 13 C -0.015 4.015 14 N -0.348 5.348 15 C 0.313 3.687 16 O -0.470 6.470 17 C -0.158 4.158 18 C -0.070 4.070 19 C -0.284 4.284 20 C -0.159 4.159 21 C -0.145 4.145 22 C -0.311 4.311 23 Cl 0.010 6.990 24 S 0.401 5.599 25 C -0.017 4.017 26 H 0.060 0.940 27 H 0.205 0.795 28 H 0.103 0.897 29 H 0.079 0.921 30 H 0.115 0.885 31 H 0.108 0.892 32 H 0.130 0.870 33 H 0.142 0.858 34 H 0.111 0.889 35 H 0.091 0.909 36 H 0.186 0.814 37 H 0.183 0.817 38 H 0.073 0.927 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.043 -28.379 -6.260 30.436 hybrid contribution 0.879 1.049 0.663 1.521 sum 9.922 -27.330 -5.596 29.609 Atomic orbital electron populations 1.69815 1.06712 1.26191 1.59287 1.25597 0.96351 1.01235 1.03621 0.85196 0.77134 0.79046 0.78268 1.20022 1.22567 1.20490 1.19570 0.91587 0.84728 1.41298 0.90049 1.42420 1.05433 1.00637 1.88523 1.21505 0.93745 0.84098 0.95180 0.92039 1.23213 1.02694 0.93982 0.98785 1.22232 0.97046 0.94949 0.87261 1.48571 1.50864 1.05715 1.29616 1.21022 0.80499 0.83075 0.84146 1.90695 1.43513 1.84322 1.28511 1.21664 1.03439 0.90075 1.00671 1.19817 1.00313 0.88288 0.98587 1.24554 0.98909 1.02914 1.01980 1.20251 0.95817 0.97467 1.02351 1.20451 1.01289 0.97894 0.94857 1.25386 1.01315 1.01260 1.03114 1.98370 1.96409 1.45054 1.59187 1.84599 1.14450 1.26673 1.34215 1.22236 0.96800 0.84728 0.97944 0.94043 0.79450 0.89676 0.92085 0.88481 0.89246 0.86973 0.85847 0.88917 0.90870 0.81433 0.81704 0.92689 0.92204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.40 13.06 21.65 0.28 -58.12 16 2 C -0.08 -4.23 5.50 84.86 0.47 -3.76 16 3 Si 0.97 44.83 29.55 68.60 2.03 46.86 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 6 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 7 C -0.24 -12.75 9.98 84.03 0.84 -11.91 16 8 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 9 N -0.73 -35.39 5.28 -316.01 -1.67 -37.06 16 10 C 0.16 6.07 3.70 46.46 0.17 6.25 16 11 H 0.06 2.29 8.13 -2.39 -0.02 2.27 16 12 C -0.15 -4.24 6.64 31.78 0.21 -4.03 16 13 C 0.11 2.22 6.48 86.73 0.56 2.78 16 14 N -0.61 -16.60 3.32 -811.34 -2.70 -19.30 16 15 C 0.52 13.65 7.85 87.66 0.69 14.33 16 16 O -0.59 -20.51 16.24 -3.04 -0.05 -20.56 16 17 C -0.12 -1.85 4.87 29.85 0.15 -1.71 16 18 C -0.03 -0.49 5.00 29.85 0.15 -0.34 16 19 C -0.17 -2.32 5.76 24.58 0.14 -2.17 16 20 C -0.13 -1.52 10.05 21.22 0.21 -1.31 16 21 C -0.11 -1.37 10.13 21.25 0.22 -1.15 16 22 C -0.17 -2.43 7.10 66.75 0.47 -1.96 16 23 Cl -0.02 -0.26 29.29 -2.72 -0.08 -0.34 16 24 S 0.14 2.04 23.33 -56.49 -1.32 0.72 16 25 C 0.11 3.70 6.53 86.93 0.57 4.27 16 26 H 0.25 14.75 8.31 -92.72 -0.77 13.98 16 27 H 0.37 19.76 7.71 -92.71 -0.72 19.05 16 28 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 29 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.11 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.09 1.56 8.10 -2.38 -0.02 1.54 16 35 H 0.07 1.37 8.10 -2.39 -0.02 1.35 16 36 H 0.17 1.32 8.06 -2.91 -0.02 1.30 16 37 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 38 H 0.05 2.04 8.01 -2.39 -0.02 2.02 16 39 H 0.06 2.24 8.03 -2.38 -0.02 2.22 16 Total: -1.00 -67.53 360.17 1.70 -65.83 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: 0.35 Total: 22.67 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: 4.85 Total: -0.71 kcal Atomic # 7 Polarization: -110.40 SS G_CDS: -4.08 Total: -114.48 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.05 Total: -20.56 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -1.32 Total: 0.72 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -0.08 Total: -0.34 kcal Total: -67.53 1.70 -65.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970706241.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.972 kcal (2) G-P(sol) polarization free energy of solvation -67.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds