Wall clock time and date at job start Tue Mar 31 2020 15:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48498 * 109.47118 * 269.99878 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00398 * 3 2 1 6 6 H 1.48507 * 109.46904 * 150.00220 * 3 2 1 7 7 C 1.38817 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 359.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 180.27450 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.08994 * 109.47052 * 35.00019 * 10 9 7 12 12 C 1.53006 * 109.46692 * 274.99780 * 10 9 7 13 13 C 1.53012 * 109.46635 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.46981 * 60.00016 * 13 12 10 15 15 C 1.53001 * 109.47259 * 300.00142 * 14 13 12 16 16 H 1.09002 * 109.47065 * 180.02562 * 15 14 13 17 17 N 1.46495 * 109.47046 * 299.99692 * 15 14 13 18 18 C 1.34776 * 120.00412 * 275.00167 * 17 15 14 19 19 O 1.21718 * 119.99788 * 0.02562 * 18 17 15 20 20 C 1.46432 * 120.00101 * 179.97438 * 18 17 15 21 21 S 1.75824 * 125.46423 * 0.02794 * 20 18 17 22 22 C 1.70609 * 91.58881 * 179.97438 * 21 20 18 23 23 C 1.33769 * 110.99993 * 359.97438 * 22 21 20 24 24 C 1.36800 * 125.46107 * 179.71637 * 20 18 17 25 25 Cl 1.73598 * 123.38008 * 359.97438 * 24 20 18 26 26 C 1.52995 * 109.47024 * 155.00126 * 10 9 7 27 27 H 0.97000 * 120.00553 * 359.97438 * 1 2 3 28 28 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 29 29 H 1.08994 * 109.47567 * 299.99923 * 12 10 9 30 30 H 1.08991 * 109.47054 * 60.00626 * 12 10 9 31 31 H 1.08999 * 109.46647 * 180.02562 * 13 12 10 32 32 H 1.08999 * 109.47000 * 300.00691 * 13 12 10 33 33 H 1.09002 * 109.47185 * 59.99918 * 14 13 12 34 34 H 1.08998 * 109.47319 * 179.97438 * 14 13 12 35 35 H 0.97000 * 119.99698 * 95.00146 * 17 15 14 36 36 H 1.08004 * 124.50313 * 179.97438 * 22 21 20 37 37 H 1.07997 * 122.45448 * 180.02562 * 23 22 21 38 38 H 1.08999 * 109.47405 * 299.99602 * 26 10 9 39 39 H 1.09002 * 109.47452 * 59.99785 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2022 0.0051 10 6 4.1120 -2.4709 0.0107 11 1 3.5671 -3.2076 -0.5795 12 6 4.2522 -2.9725 1.4494 13 6 5.0166 -4.2980 1.4551 14 6 6.4063 -4.0878 0.8506 15 6 6.2661 -3.5861 -0.5880 16 1 7.2562 -3.4368 -1.0188 17 7 5.5333 -4.5760 -1.3812 18 6 6.1905 -5.6100 -1.9427 19 8 7.3929 -5.7216 -1.7905 20 6 5.4578 -6.5997 -2.7351 21 16 3.7274 -6.5791 -3.0460 22 6 3.8289 -8.0077 -3.9731 23 6 5.0891 -8.4525 -4.0320 24 6 6.0108 -7.6854 -3.3570 25 17 7.7050 -8.0596 -3.2982 26 6 5.5017 -2.2601 -0.5935 27 1 -0.4851 0.8400 0.0004 28 1 3.8646 -0.3621 0.0055 29 1 4.7971 -2.2359 2.0396 30 1 3.2622 -3.1227 1.8798 31 1 5.1161 -4.6555 2.4800 32 1 4.4713 -5.0345 0.8649 33 1 6.9517 -3.3512 1.4407 34 1 6.9511 -5.0318 0.8550 35 1 4.5750 -4.4872 -1.5022 36 1 2.9874 -8.4890 -4.4493 37 1 5.3636 -9.3460 -4.5729 38 1 5.4019 -1.9028 -1.6184 39 1 6.0466 -1.5234 -0.0033 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981103194.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:35 Heat of formation + Delta-G solvation = -3.090235 kcal Electronic energy + Delta-G solvation = -23454.003106 eV Core-core repulsion = 19935.095737 eV Total energy + Delta-G solvation = -3518.907369 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.23459 -38.62273 -37.57399 -36.22793 -34.64235 -33.15421 -31.41046 -30.63599 -29.28167 -28.32245 -25.29311 -23.54349 -22.50415 -21.85322 -20.98440 -19.71409 -19.21290 -18.74532 -17.63016 -16.54648 -15.99187 -15.47120 -15.27856 -14.93482 -14.56119 -14.09361 -13.88035 -13.74924 -13.72292 -13.42943 -13.05938 -12.85487 -12.66806 -12.28987 -11.95314 -11.86298 -11.68038 -11.50290 -11.29955 -11.00246 -10.96945 -10.96113 -10.47163 -10.30043 -10.11507 -9.95712 -9.75109 -9.61633 -9.27324 -8.99220 -8.90602 -8.77824 -7.32231 -5.81761 -3.17590 0.10971 0.92154 1.41754 1.93012 2.26308 3.05489 3.07876 3.34370 3.37317 3.42754 4.51116 4.55049 4.70499 4.79652 4.90136 4.99956 5.05780 5.32363 5.40331 5.44914 5.55337 5.57686 5.60022 5.65835 5.74338 5.84777 5.92543 5.98924 6.09106 6.19843 6.36272 6.38555 6.53014 6.59865 6.81196 6.95464 7.43674 7.93487 8.11821 8.37145 9.15462 9.88261 10.07814 11.36419 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.017295 B = 0.003378 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.558593 B = 8286.404615 C = 9208.967104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.006 3.994 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.244 4.244 8 H 0.090 0.910 9 N -0.748 5.748 10 C 0.185 3.815 11 H 0.049 0.951 12 C -0.137 4.137 13 C -0.116 4.116 14 C -0.129 4.129 15 C 0.154 3.846 16 H 0.088 0.912 17 N -0.713 5.713 18 C 0.586 3.414 19 O -0.516 6.516 20 C -0.267 4.267 21 S 0.260 5.740 22 C -0.226 4.226 23 C -0.146 4.146 24 C 0.015 3.985 25 Cl -0.018 7.018 26 C -0.139 4.139 27 H 0.260 0.740 28 H 0.361 0.639 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.400 0.600 36 H 0.178 0.822 37 H 0.153 0.847 38 H 0.071 0.929 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.402 -16.661 -6.377 21.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.190 4.190 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.374 4.374 8 H 0.108 0.892 9 N -0.390 5.390 10 C 0.075 3.925 11 H 0.067 0.933 12 C -0.178 4.178 13 C -0.154 4.154 14 C -0.167 4.167 15 C 0.050 3.950 16 H 0.107 0.893 17 N -0.366 5.366 18 C 0.371 3.629 19 O -0.393 6.393 20 C -0.389 4.389 21 S 0.527 5.473 22 C -0.364 4.364 23 C -0.177 4.177 24 C -0.028 4.028 25 Cl 0.011 6.989 26 C -0.178 4.178 27 H 0.070 0.930 28 H 0.194 0.806 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.236 0.764 36 H 0.196 0.804 37 H 0.171 0.829 38 H 0.090 0.910 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.948 -15.837 -5.856 20.124 hybrid contribution 1.175 0.148 -0.504 1.288 sum 12.123 -15.688 -6.361 20.822 Atomic orbital electron populations 1.69694 1.05118 1.25870 1.57398 1.24666 0.95205 0.97205 1.01943 0.86567 0.79236 0.85025 0.77773 1.21095 1.21797 1.20304 1.19051 0.80533 0.94660 1.43183 0.89207 1.42784 1.04023 1.01927 1.90304 1.20124 0.89825 0.89128 0.93432 0.93341 1.22256 1.00205 0.95375 0.99917 1.21509 0.95435 0.98458 1.00034 1.21917 0.97931 1.01596 0.95263 1.20978 0.95920 0.87173 0.90923 0.89349 1.46075 1.11981 1.26017 1.52545 1.16744 0.86720 0.80548 0.78841 1.90865 1.13151 1.74770 1.60558 1.24667 0.98970 1.03509 1.11744 1.83560 1.00459 1.20067 1.43224 1.25269 1.01802 1.02774 1.06604 1.19747 0.91277 1.02860 1.03831 1.20328 0.88226 0.94916 0.99290 1.98399 1.10183 1.93426 1.96920 1.22198 0.97604 0.95600 1.02356 0.93042 0.80595 0.92563 0.91520 0.92558 0.92526 0.91010 0.91791 0.76354 0.80449 0.82909 0.91015 0.90383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.45 13.97 55.49 0.78 -27.68 16 2 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 3 Si 0.88 21.48 27.74 -169.99 -4.72 16.77 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.33 6.51 56.52 0.37 -5.96 16 7 C -0.24 -6.53 10.41 -15.06 -0.16 -6.69 16 8 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 9 N -0.75 -16.55 4.92 -53.42 -0.26 -16.81 16 10 C 0.18 3.20 2.60 -67.93 -0.18 3.02 16 11 H 0.05 0.85 6.44 -51.93 -0.33 0.52 16 12 C -0.14 -2.22 5.50 -26.72 -0.15 -2.37 16 13 C -0.12 -1.55 5.77 -26.73 -0.15 -1.70 16 14 C -0.13 -1.63 5.60 -26.73 -0.15 -1.78 16 15 C 0.15 2.02 2.78 -67.91 -0.19 1.83 16 16 H 0.09 1.18 7.57 -51.93 -0.39 0.79 16 17 N -0.71 -9.25 4.23 -55.17 -0.23 -9.48 16 18 C 0.59 8.19 7.74 -12.96 -0.10 8.08 16 19 O -0.52 -8.44 14.75 5.17 0.08 -8.37 16 20 C -0.27 -3.23 6.45 -36.81 -0.24 -3.47 16 21 S 0.26 2.43 22.15 -107.50 -2.38 0.04 16 22 C -0.23 -1.74 10.92 29.16 0.32 -1.42 16 23 C -0.15 -1.28 10.06 -41.38 -0.42 -1.70 16 24 C 0.02 0.17 6.40 -40.33 -0.26 -0.08 16 25 Cl -0.02 -0.22 27.24 -51.86 -1.41 -1.64 16 26 C -0.14 -1.99 5.08 -26.71 -0.14 -2.13 16 27 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 28 H 0.36 7.94 5.66 -40.82 -0.23 7.71 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.75 7.60 -51.93 -0.39 0.36 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.40 4.98 5.97 -40.82 -0.24 4.74 16 36 H 0.18 0.85 8.06 -52.48 -0.42 0.43 16 37 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 343.27 15.07 5.17 5.17 Total: -1.00 -31.55 343.27 -9.87 -41.43 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -4.99 Total: 8.89 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -1.90 Total: -8.32 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: 0.28 Total: -53.98 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: 0.08 Total: -8.37 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.72 Total: 16.77 kcal Atomic # 16 Polarization: 2.43 SS G_CDS: -2.38 Total: 0.04 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -1.41 Total: -1.64 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.55 -9.87 -41.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981103194.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.338 kcal (2) G-P(sol) polarization free energy of solvation -31.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds