Wall clock time and date at job start Tue Mar 31 2020 15:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48498 * 109.47118 * 269.99878 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00398 * 3 2 1 6 6 H 1.48507 * 109.46904 * 150.00220 * 3 2 1 7 7 C 1.38817 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 359.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 180.27450 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.08994 * 109.47052 * 35.00019 * 10 9 7 12 12 C 1.53006 * 109.46692 * 274.99780 * 10 9 7 13 13 C 1.53012 * 109.46635 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.46981 * 60.00016 * 13 12 10 15 15 C 1.53001 * 109.47259 * 300.00142 * 14 13 12 16 16 H 1.09002 * 109.47065 * 180.02562 * 15 14 13 17 17 N 1.46495 * 109.47046 * 299.99692 * 15 14 13 18 18 C 1.34776 * 120.00412 * 275.00167 * 17 15 14 19 19 O 1.21718 * 119.99788 * 0.02562 * 18 17 15 20 20 C 1.46432 * 120.00101 * 179.97438 * 18 17 15 21 21 S 1.75824 * 125.46423 * 0.02794 * 20 18 17 22 22 C 1.70609 * 91.58881 * 179.97438 * 21 20 18 23 23 C 1.33769 * 110.99993 * 359.97438 * 22 21 20 24 24 C 1.36800 * 125.46107 * 179.71637 * 20 18 17 25 25 Cl 1.73598 * 123.38008 * 359.97438 * 24 20 18 26 26 C 1.52995 * 109.47024 * 155.00126 * 10 9 7 27 27 H 0.97000 * 120.00553 * 359.97438 * 1 2 3 28 28 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 29 29 H 1.08994 * 109.47567 * 299.99923 * 12 10 9 30 30 H 1.08991 * 109.47054 * 60.00626 * 12 10 9 31 31 H 1.08999 * 109.46647 * 180.02562 * 13 12 10 32 32 H 1.08999 * 109.47000 * 300.00691 * 13 12 10 33 33 H 1.09002 * 109.47185 * 59.99918 * 14 13 12 34 34 H 1.08998 * 109.47319 * 179.97438 * 14 13 12 35 35 H 0.97000 * 119.99698 * 95.00146 * 17 15 14 36 36 H 1.08004 * 124.50313 * 179.97438 * 22 21 20 37 37 H 1.07997 * 122.45448 * 180.02562 * 23 22 21 38 38 H 1.08999 * 109.47405 * 299.99602 * 26 10 9 39 39 H 1.09002 * 109.47452 * 59.99785 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2022 0.0051 10 6 4.1120 -2.4709 0.0107 11 1 3.5671 -3.2076 -0.5795 12 6 4.2522 -2.9725 1.4494 13 6 5.0166 -4.2980 1.4551 14 6 6.4063 -4.0878 0.8506 15 6 6.2661 -3.5861 -0.5880 16 1 7.2562 -3.4368 -1.0188 17 7 5.5333 -4.5760 -1.3812 18 6 6.1905 -5.6100 -1.9427 19 8 7.3929 -5.7216 -1.7905 20 6 5.4578 -6.5997 -2.7351 21 16 3.7274 -6.5791 -3.0460 22 6 3.8289 -8.0077 -3.9731 23 6 5.0891 -8.4525 -4.0320 24 6 6.0108 -7.6854 -3.3570 25 17 7.7050 -8.0596 -3.2982 26 6 5.5017 -2.2601 -0.5935 27 1 -0.4851 0.8400 0.0004 28 1 3.8646 -0.3621 0.0055 29 1 4.7971 -2.2359 2.0396 30 1 3.2622 -3.1227 1.8798 31 1 5.1161 -4.6555 2.4800 32 1 4.4713 -5.0345 0.8649 33 1 6.9517 -3.3512 1.4407 34 1 6.9511 -5.0318 0.8550 35 1 4.5750 -4.4872 -1.5022 36 1 2.9874 -8.4890 -4.4493 37 1 5.3636 -9.3460 -4.5729 38 1 5.4019 -1.9028 -1.6184 39 1 6.0466 -1.5234 -0.0033 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981103194.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:34 Heat of formation + Delta-G solvation = -22.597413 kcal Electronic energy + Delta-G solvation = -23454.849000 eV Core-core repulsion = 19935.095737 eV Total energy + Delta-G solvation = -3519.753263 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.31879 -39.63619 -38.60136 -37.07870 -36.23899 -34.49604 -33.24230 -31.63326 -30.43327 -29.70526 -26.11299 -25.34891 -23.59699 -22.94662 -22.39887 -20.56280 -20.45569 -19.73890 -19.43488 -17.41983 -17.12080 -16.64391 -16.52537 -16.13199 -16.03482 -15.37378 -15.12994 -14.81434 -14.66459 -14.50499 -14.46120 -14.17967 -13.82830 -13.69559 -13.07863 -13.06143 -12.98292 -12.84478 -12.52104 -12.37021 -12.26273 -12.00845 -11.82341 -11.79103 -11.61941 -11.52005 -11.04327 -11.02428 -10.87077 -10.20740 -9.87385 -9.54786 -9.26897 -7.98121 -5.30785 -0.69480 0.12508 0.71678 1.18671 1.41359 1.42048 1.43601 1.50837 2.04955 2.08145 2.52084 3.33274 3.44952 3.69124 3.84633 3.91228 3.99378 4.12273 4.19987 4.27406 4.32857 4.52310 4.63852 4.66588 4.69384 4.79255 4.89688 4.92824 4.99617 5.08332 5.16459 5.20418 5.36423 5.44194 5.49931 5.62505 5.82649 6.25869 6.39433 7.07876 7.12595 7.88985 8.07460 9.23244 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.017295 B = 0.003378 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.558593 B = 8286.404615 C = 9208.967104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.064 4.064 3 Si 0.950 3.050 4 H -0.280 1.280 5 H -0.301 1.301 6 H -0.251 1.251 7 C -0.223 4.223 8 H 0.060 0.940 9 N -0.751 5.751 10 C 0.178 3.822 11 H 0.044 0.956 12 C -0.129 4.129 13 C -0.107 4.107 14 C -0.122 4.122 15 C 0.159 3.841 16 H 0.090 0.910 17 N -0.711 5.711 18 C 0.586 3.414 19 O -0.547 6.547 20 C -0.302 4.302 21 S 0.269 5.731 22 C -0.203 4.203 23 C -0.155 4.155 24 C 0.011 3.989 25 Cl -0.032 7.032 26 C -0.127 4.127 27 H 0.256 0.744 28 H 0.365 0.635 29 H 0.059 0.941 30 H 0.039 0.961 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.086 0.914 34 H 0.061 0.939 35 H 0.402 0.598 36 H 0.213 0.787 37 H 0.177 0.823 38 H 0.070 0.930 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.673 -17.268 -6.880 22.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.255 4.255 3 Si 0.778 3.222 4 H -0.206 1.206 5 H -0.229 1.229 6 H -0.175 1.175 7 C -0.354 4.354 8 H 0.078 0.922 9 N -0.394 5.394 10 C 0.070 3.930 11 H 0.062 0.938 12 C -0.169 4.169 13 C -0.145 4.145 14 C -0.160 4.160 15 C 0.054 3.946 16 H 0.109 0.891 17 N -0.363 5.363 18 C 0.372 3.628 19 O -0.426 6.426 20 C -0.423 4.423 21 S 0.536 5.464 22 C -0.341 4.341 23 C -0.185 4.185 24 C -0.033 4.033 25 Cl -0.003 7.003 26 C -0.166 4.166 27 H 0.065 0.935 28 H 0.198 0.802 29 H 0.078 0.922 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.105 0.895 34 H 0.080 0.920 35 H 0.239 0.761 36 H 0.230 0.770 37 H 0.194 0.806 38 H 0.089 0.911 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 12.267 -16.476 -6.356 21.502 hybrid contribution 0.713 0.186 -0.384 0.831 sum 12.980 -16.290 -6.740 21.893 Atomic orbital electron populations 1.69871 1.07093 1.26464 1.60103 1.25436 0.95991 1.01016 1.03057 0.85480 0.78732 0.80029 0.77948 1.20636 1.22860 1.17544 1.19020 0.82560 0.93352 1.40477 0.92185 1.42807 1.02464 1.03894 1.90230 1.20357 0.91083 0.87091 0.94431 0.93809 1.22096 0.99228 0.97034 0.98550 1.21419 0.95450 0.96640 1.01007 1.21867 0.97318 1.01910 0.94919 1.20934 0.95714 0.86555 0.91374 0.89149 1.46058 1.12000 1.25886 1.52395 1.16987 0.86488 0.80716 0.78584 1.90838 1.14380 1.75594 1.61833 1.24592 1.00538 1.03939 1.13223 1.83568 0.98393 1.21089 1.43375 1.25697 1.02435 1.01279 1.04687 1.19960 0.91048 1.03511 1.03981 1.20672 0.87958 0.95209 0.99472 1.98390 1.11492 1.93454 1.96971 1.22071 0.95619 0.96685 1.02200 0.93544 0.80179 0.92226 0.94240 0.91239 0.92660 0.89543 0.92035 0.76148 0.76999 0.80617 0.91087 0.89035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.54 13.97 21.65 0.30 -61.24 16 2 C -0.06 -3.63 5.50 84.86 0.47 -3.16 16 3 Si 0.95 44.15 27.74 68.60 1.90 46.05 16 4 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 5 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 6 H -0.25 -10.44 6.51 99.48 0.65 -9.79 16 7 C -0.22 -12.02 10.41 84.04 0.87 -11.15 16 8 H 0.06 3.54 8.06 -2.91 -0.02 3.51 16 9 N -0.75 -32.44 4.92 -322.93 -1.59 -34.03 16 10 C 0.18 5.99 2.60 44.99 0.12 6.10 16 11 H 0.04 1.52 6.44 -2.39 -0.02 1.51 16 12 C -0.13 -4.03 5.50 30.60 0.17 -3.86 16 13 C -0.11 -2.67 5.77 30.60 0.18 -2.50 16 14 C -0.12 -2.82 5.60 30.59 0.17 -2.65 16 15 C 0.16 3.89 2.78 45.01 0.13 4.01 16 16 H 0.09 2.26 7.57 -2.39 -0.02 2.24 16 17 N -0.71 -17.80 4.23 -446.66 -1.89 -19.69 16 18 C 0.59 16.04 7.74 86.38 0.67 16.70 16 19 O -0.55 -17.73 14.75 -4.41 -0.06 -17.80 16 20 C -0.30 -7.04 6.45 24.07 0.16 -6.89 16 21 S 0.27 4.60 22.15 -56.49 -1.25 3.35 16 22 C -0.20 -2.51 10.92 66.80 0.73 -1.78 16 23 C -0.16 -2.35 10.06 21.10 0.21 -2.14 16 24 C 0.01 0.23 6.40 21.78 0.14 0.37 16 25 Cl -0.03 -0.77 27.24 -2.72 -0.07 -0.84 16 26 C -0.13 -3.39 5.08 30.61 0.16 -3.23 16 27 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 28 H 0.37 15.22 5.66 -92.71 -0.52 14.70 16 29 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.04 1.43 8.14 -2.39 -0.02 1.42 16 31 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.05 1.40 7.60 -2.39 -0.02 1.38 16 33 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.40 9.74 5.97 -92.71 -0.55 9.19 16 36 H 0.21 1.10 8.06 -2.91 -0.02 1.07 16 37 H 0.18 1.80 8.06 -2.91 -0.02 1.78 16 38 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -69.24 343.27 1.45 -67.79 By element: Atomic # 1 Polarization: 26.60 SS G_CDS: -0.05 Total: 26.56 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: 4.16 Total: -10.15 kcal Atomic # 7 Polarization: -111.78 SS G_CDS: -3.18 Total: -114.96 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -0.06 Total: -17.80 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.90 Total: 46.05 kcal Atomic # 16 Polarization: 4.60 SS G_CDS: -1.25 Total: 3.35 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -0.07 Total: -0.84 kcal Total: -69.24 1.45 -67.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981103194.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.195 kcal (2) G-P(sol) polarization free energy of solvation -69.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds