Wall clock time and date at job start Tue Mar 31 2020 15:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31608 * 1 3 3 Si 1.86809 * 119.99977 * 2 1 4 4 H 1.48497 * 109.46924 * 269.99814 * 3 2 1 5 5 H 1.48498 * 109.46873 * 30.00330 * 3 2 1 6 6 H 1.48498 * 109.46927 * 149.99999 * 3 2 1 7 7 C 1.38813 * 120.00460 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99529 * 0.02562 * 7 2 1 9 9 N 1.36938 * 120.00363 * 180.02562 * 7 2 1 10 10 C 1.46501 * 119.99949 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.47379 * 324.99988 * 10 9 7 12 12 C 1.52998 * 109.47151 * 84.99876 * 10 9 7 13 13 C 1.52997 * 109.47297 * 59.99821 * 12 10 9 14 14 C 1.52999 * 109.46995 * 60.00233 * 13 12 10 15 15 C 1.52998 * 109.46908 * 300.00005 * 14 13 12 16 16 H 1.08999 * 109.47053 * 299.99840 * 15 14 13 17 17 N 1.46500 * 109.47118 * 180.02562 * 15 14 13 18 18 C 1.34771 * 120.00638 * 85.00021 * 17 15 14 19 19 O 1.21721 * 119.99714 * 359.97438 * 18 17 15 20 20 C 1.46436 * 120.00464 * 179.97438 * 18 17 15 21 21 S 1.75827 * 125.46010 * 359.69593 * 20 18 17 22 22 C 1.70612 * 91.58691 * 180.26159 * 21 20 18 23 23 C 1.33770 * 110.99752 * 359.97438 * 22 21 20 24 24 C 1.36795 * 125.46544 * 179.97438 * 20 18 17 25 25 Cl 1.73599 * 123.37573 * 359.71797 * 24 20 18 26 26 C 1.52997 * 109.47297 * 60.00180 * 15 14 13 27 27 H 0.97001 * 120.00620 * 359.97438 * 1 2 3 28 28 H 0.96999 * 120.00019 * 359.97438 * 9 7 2 29 29 H 1.09005 * 109.47478 * 180.02562 * 12 10 9 30 30 H 1.09004 * 109.47063 * 299.99691 * 12 10 9 31 31 H 1.09003 * 109.47449 * 180.02562 * 13 12 10 32 32 H 1.08999 * 109.47347 * 300.00160 * 13 12 10 33 33 H 1.09000 * 109.47192 * 180.02562 * 14 13 12 34 34 H 1.08995 * 109.47532 * 60.00061 * 14 13 12 35 35 H 0.97006 * 119.99755 * 264.99738 * 17 15 14 36 36 H 1.07999 * 124.50056 * 179.97438 * 22 21 20 37 37 H 1.07999 * 122.44996 * 180.02562 * 23 22 21 38 38 H 1.08999 * 109.47347 * 59.99840 * 26 15 14 39 39 H 1.09000 * 109.47391 * 180.02562 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5476 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4708 0.0011 11 1 3.5646 -3.2065 0.5901 12 6 4.2588 -2.9750 -1.4360 13 6 5.0273 -1.9424 -2.2629 14 6 6.4143 -1.7305 -1.6528 15 6 6.2677 -1.2263 -0.2157 16 1 5.7227 -0.2823 -0.2157 17 7 7.5957 -1.0228 0.3683 18 6 8.2508 0.1373 0.1652 19 8 7.7392 1.0160 -0.5040 20 6 9.5780 0.3409 0.7495 21 16 10.4450 -0.8231 1.7420 22 6 11.7638 0.2438 1.9248 23 6 11.5452 1.3920 1.2742 24 6 10.3398 1.4691 0.6152 25 17 9.8366 2.8583 -0.2961 26 6 5.4991 -2.2589 0.6112 27 1 -0.4851 0.8400 0.0004 28 1 3.8646 -0.3620 0.0007 29 1 4.8034 -3.9193 -1.4360 30 1 3.2706 -3.1260 -1.8707 31 1 5.1314 -2.3014 -3.2868 32 1 4.4824 -0.9984 -2.2629 33 1 6.9617 -0.9945 -2.2416 34 1 6.9594 -2.6744 -1.6527 35 1 8.0036 -1.7232 0.9014 36 1 12.6565 0.0216 2.4907 37 1 12.2624 2.1995 1.2668 38 1 6.0441 -3.2029 0.6112 39 1 5.3942 -1.8995 1.6349 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981103195.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:37 Heat of formation + Delta-G solvation = -1.141555 kcal Electronic energy + Delta-G solvation = -23546.144739 eV Core-core repulsion = 20027.321871 eV Total energy + Delta-G solvation = -3518.822868 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -40.12579 -38.65563 -37.70814 -36.27162 -34.63256 -33.12605 -31.19243 -30.63033 -29.18574 -28.37197 -25.34280 -23.40853 -22.55476 -21.95606 -20.98780 -19.86565 -19.22195 -18.26839 -17.70023 -16.72892 -15.97471 -15.65487 -15.25328 -14.55829 -14.51273 -14.04834 -13.95393 -13.92409 -13.77314 -13.45663 -13.15325 -12.71191 -12.47517 -12.22099 -12.15978 -11.72934 -11.67102 -11.59995 -11.08156 -10.99477 -10.87409 -10.74668 -10.31827 -10.26380 -10.18474 -9.95959 -9.63558 -9.51350 -9.34054 -8.99207 -8.88246 -8.81664 -7.22873 -5.73294 -3.08390 0.00866 0.80020 1.27810 1.84602 2.20484 3.01088 3.03782 3.44720 3.49557 3.53811 4.41094 4.63484 4.64532 4.71896 4.95790 5.08184 5.22623 5.34728 5.41845 5.48763 5.55628 5.56235 5.60827 5.69283 5.76931 5.97752 5.97928 6.05890 6.22072 6.32811 6.39888 6.53486 6.68581 6.74742 6.90629 6.99118 7.39661 8.02988 8.11336 8.45837 9.24582 9.97649 10.16707 11.44986 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.015454 B = 0.003709 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.355604 B = 7548.182449 C = 8470.027861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.007 3.993 3 Si 0.877 3.123 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.242 4.242 8 H 0.091 0.909 9 N -0.746 5.746 10 C 0.186 3.814 11 H 0.061 0.939 12 C -0.136 4.136 13 C -0.110 4.110 14 C -0.123 4.123 15 C 0.146 3.854 16 H 0.093 0.907 17 N -0.720 5.720 18 C 0.581 3.419 19 O -0.504 6.504 20 C -0.260 4.260 21 S 0.240 5.760 22 C -0.225 4.225 23 C -0.142 4.142 24 C 0.014 3.986 25 Cl -0.012 7.012 26 C -0.132 4.132 27 H 0.259 0.741 28 H 0.361 0.639 29 H 0.047 0.953 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.393 0.607 36 H 0.178 0.822 37 H 0.155 0.845 38 H 0.067 0.933 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.567 -3.966 3.562 28.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.189 4.189 3 Si 0.707 3.293 4 H -0.209 1.209 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.372 4.372 8 H 0.109 0.891 9 N -0.390 5.390 10 C 0.076 3.924 11 H 0.079 0.921 12 C -0.176 4.176 13 C -0.148 4.148 14 C -0.161 4.161 15 C 0.042 3.958 16 H 0.111 0.889 17 N -0.370 5.370 18 C 0.366 3.634 19 O -0.380 6.380 20 C -0.381 4.381 21 S 0.506 5.494 22 C -0.363 4.363 23 C -0.173 4.173 24 C -0.028 4.028 25 Cl 0.017 6.983 26 C -0.171 4.171 27 H 0.069 0.931 28 H 0.195 0.805 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.226 0.774 36 H 0.195 0.805 37 H 0.172 0.828 38 H 0.086 0.914 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 26.573 -4.720 3.537 27.219 hybrid contribution 1.270 2.562 -0.258 2.871 sum 27.843 -2.159 3.279 28.118 Atomic orbital electron populations 1.69690 1.05083 1.25775 1.57667 1.24623 0.95145 0.97045 1.02040 0.86673 0.79271 0.85235 0.78099 1.20923 1.21753 1.20288 1.19059 0.80601 0.94612 1.42887 0.89136 1.42880 1.04005 1.01943 1.90212 1.20122 0.89251 0.89575 0.93494 0.92104 1.22158 1.00171 0.96733 0.98529 1.21369 0.94385 1.01186 0.97907 1.21882 0.98424 1.00534 0.95295 1.21117 0.81048 1.00772 0.92824 0.88881 1.46031 1.20005 1.16609 1.54392 1.16785 0.83010 0.82907 0.80706 1.90929 1.66640 1.42078 1.38311 1.24672 1.01882 0.99964 1.11626 1.83080 1.07019 1.15674 1.43670 1.25192 1.05332 0.98918 1.06863 1.19785 0.97107 0.99947 1.00499 1.20391 0.94265 0.90258 0.97928 1.98421 1.90688 1.37924 1.71278 1.22141 0.97419 0.97935 0.99609 0.93107 0.80479 0.93432 0.91402 0.92778 0.90914 0.92066 0.92303 0.77351 0.80489 0.82782 0.91432 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.57 13.97 55.49 0.78 -28.80 16 2 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 3 Si 0.88 23.08 27.74 -169.99 -4.71 18.37 16 4 H -0.28 -7.48 7.11 56.52 0.40 -7.08 16 5 H -0.29 -7.74 7.11 56.52 0.40 -7.34 16 6 H -0.28 -7.05 6.52 56.52 0.37 -6.68 16 7 C -0.24 -6.74 10.41 -15.06 -0.16 -6.89 16 8 H 0.09 2.68 8.06 -52.48 -0.42 2.25 16 9 N -0.75 -17.30 4.08 -53.42 -0.22 -17.52 16 10 C 0.19 3.37 3.10 -67.93 -0.21 3.16 16 11 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 12 C -0.14 -2.25 5.61 -26.73 -0.15 -2.40 16 13 C -0.11 -1.80 5.77 -26.73 -0.15 -1.95 16 14 C -0.12 -1.79 5.49 -26.73 -0.15 -1.94 16 15 C 0.15 2.24 2.28 -67.93 -0.15 2.08 16 16 H 0.09 1.80 5.94 -51.93 -0.31 1.49 16 17 N -0.72 -9.27 5.07 -55.19 -0.28 -9.55 16 18 C 0.58 8.62 7.74 -12.96 -0.10 8.52 16 19 O -0.50 -9.46 14.75 5.17 0.08 -9.38 16 20 C -0.26 -3.06 6.45 -36.81 -0.24 -3.30 16 21 S 0.24 1.73 22.15 -107.50 -2.38 -0.65 16 22 C -0.23 -1.43 10.92 29.16 0.32 -1.11 16 23 C -0.14 -1.17 10.06 -41.38 -0.42 -1.59 16 24 C 0.01 0.16 6.39 -40.34 -0.26 -0.10 16 25 Cl -0.01 -0.16 27.24 -51.86 -1.41 -1.57 16 26 C -0.13 -1.92 5.08 -26.73 -0.14 -2.05 16 27 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 28 H 0.36 8.56 3.92 -40.82 -0.16 8.40 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.07 1.41 7.60 -51.93 -0.39 1.02 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.39 3.78 7.71 -40.82 -0.31 3.47 16 36 H 0.18 0.58 8.06 -52.49 -0.42 0.15 16 37 H 0.15 0.96 8.06 -52.49 -0.42 0.53 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 343.27 15.07 5.17 5.17 Total: -1.00 -33.81 343.27 -9.87 -43.68 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -4.99 Total: 7.72 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -1.90 Total: -7.46 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: 0.28 Total: -55.87 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.08 Total: -9.38 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -4.71 Total: 18.37 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -2.38 Total: -0.65 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -1.41 Total: -1.57 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.81 -9.87 -43.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981103195.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.539 kcal (2) G-P(sol) polarization free energy of solvation -33.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds