Wall clock time and date at job start Tue Mar 31 2020 15:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31608 * 1 3 3 Si 1.86809 * 119.99977 * 2 1 4 4 H 1.48497 * 109.46924 * 269.99814 * 3 2 1 5 5 H 1.48498 * 109.46873 * 30.00330 * 3 2 1 6 6 H 1.48498 * 109.46927 * 149.99999 * 3 2 1 7 7 C 1.38813 * 120.00460 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99529 * 0.02562 * 7 2 1 9 9 N 1.36938 * 120.00363 * 180.02562 * 7 2 1 10 10 C 1.46501 * 119.99949 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.47379 * 324.99988 * 10 9 7 12 12 C 1.52998 * 109.47151 * 84.99876 * 10 9 7 13 13 C 1.52997 * 109.47297 * 59.99821 * 12 10 9 14 14 C 1.52999 * 109.46995 * 60.00233 * 13 12 10 15 15 C 1.52998 * 109.46908 * 300.00005 * 14 13 12 16 16 H 1.08999 * 109.47053 * 299.99840 * 15 14 13 17 17 N 1.46500 * 109.47118 * 180.02562 * 15 14 13 18 18 C 1.34771 * 120.00638 * 85.00021 * 17 15 14 19 19 O 1.21721 * 119.99714 * 359.97438 * 18 17 15 20 20 C 1.46436 * 120.00464 * 179.97438 * 18 17 15 21 21 S 1.75827 * 125.46010 * 359.69593 * 20 18 17 22 22 C 1.70612 * 91.58691 * 180.26159 * 21 20 18 23 23 C 1.33770 * 110.99752 * 359.97438 * 22 21 20 24 24 C 1.36795 * 125.46544 * 179.97438 * 20 18 17 25 25 Cl 1.73599 * 123.37573 * 359.71797 * 24 20 18 26 26 C 1.52997 * 109.47297 * 60.00180 * 15 14 13 27 27 H 0.97001 * 120.00620 * 359.97438 * 1 2 3 28 28 H 0.96999 * 120.00019 * 359.97438 * 9 7 2 29 29 H 1.09005 * 109.47478 * 180.02562 * 12 10 9 30 30 H 1.09004 * 109.47063 * 299.99691 * 12 10 9 31 31 H 1.09003 * 109.47449 * 180.02562 * 13 12 10 32 32 H 1.08999 * 109.47347 * 300.00160 * 13 12 10 33 33 H 1.09000 * 109.47192 * 180.02562 * 14 13 12 34 34 H 1.08995 * 109.47532 * 60.00061 * 14 13 12 35 35 H 0.97006 * 119.99755 * 264.99738 * 17 15 14 36 36 H 1.07999 * 124.50056 * 179.97438 * 22 21 20 37 37 H 1.07999 * 122.44996 * 180.02562 * 23 22 21 38 38 H 1.08999 * 109.47347 * 59.99840 * 26 15 14 39 39 H 1.09000 * 109.47391 * 180.02562 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5476 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4708 0.0011 11 1 3.5646 -3.2065 0.5901 12 6 4.2588 -2.9750 -1.4360 13 6 5.0273 -1.9424 -2.2629 14 6 6.4143 -1.7305 -1.6528 15 6 6.2677 -1.2263 -0.2157 16 1 5.7227 -0.2823 -0.2157 17 7 7.5957 -1.0228 0.3683 18 6 8.2508 0.1373 0.1652 19 8 7.7392 1.0160 -0.5040 20 6 9.5780 0.3409 0.7495 21 16 10.4450 -0.8231 1.7420 22 6 11.7638 0.2438 1.9248 23 6 11.5452 1.3920 1.2742 24 6 10.3398 1.4691 0.6152 25 17 9.8366 2.8583 -0.2961 26 6 5.4991 -2.2589 0.6112 27 1 -0.4851 0.8400 0.0004 28 1 3.8646 -0.3620 0.0007 29 1 4.8034 -3.9193 -1.4360 30 1 3.2706 -3.1260 -1.8707 31 1 5.1314 -2.3014 -3.2868 32 1 4.4824 -0.9984 -2.2629 33 1 6.9617 -0.9945 -2.2416 34 1 6.9594 -2.6744 -1.6527 35 1 8.0036 -1.7232 0.9014 36 1 12.6565 0.0216 2.4907 37 1 12.2624 2.1995 1.2668 38 1 6.0441 -3.2029 0.6112 39 1 5.3942 -1.8995 1.6349 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981103195.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:37 Heat of formation + Delta-G solvation = -24.063052 kcal Electronic energy + Delta-G solvation = -23547.138690 eV Core-core repulsion = 20027.321871 eV Total energy + Delta-G solvation = -3519.816818 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.24958 -39.74030 -38.71991 -37.10844 -36.12614 -34.79502 -33.07177 -31.59266 -30.56783 -29.64296 -26.11420 -25.36298 -23.62943 -23.35274 -22.13198 -20.75457 -20.21156 -19.87264 -19.36004 -17.64480 -17.02975 -16.71780 -16.46196 -16.29363 -15.79363 -15.63105 -15.18959 -14.95166 -14.68190 -14.53038 -14.43873 -14.12583 -13.86668 -13.73147 -13.42649 -13.02829 -12.98566 -12.55244 -12.51188 -12.32333 -12.22654 -12.21284 -11.88652 -11.85184 -11.63673 -11.52983 -11.27490 -10.93510 -10.89016 -10.24451 -9.89627 -9.51194 -9.27610 -8.03864 -5.32772 -0.72485 0.10980 0.69670 1.16574 1.30149 1.34719 1.37478 1.39938 1.98460 2.01747 2.43081 3.29150 3.59050 3.61918 3.83632 3.89602 3.97392 4.10452 4.14082 4.30838 4.39285 4.51377 4.64326 4.65910 4.73503 4.77729 4.91496 4.96387 4.98311 5.09423 5.12160 5.27210 5.36938 5.40895 5.55854 5.60966 5.81722 6.22457 6.40772 7.08994 7.10025 7.88254 8.03334 9.18291 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.015454 B = 0.003709 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.355604 B = 7548.182449 C = 8470.027861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.056 4.056 3 Si 0.934 3.066 4 H -0.288 1.288 5 H -0.293 1.293 6 H -0.267 1.267 7 C -0.213 4.213 8 H 0.068 0.932 9 N -0.752 5.752 10 C 0.173 3.827 11 H 0.060 0.940 12 C -0.127 4.127 13 C -0.109 4.109 14 C -0.112 4.112 15 C 0.149 3.851 16 H 0.046 0.954 17 N -0.705 5.705 18 C 0.577 3.423 19 O -0.557 6.557 20 C -0.307 4.307 21 S 0.313 5.687 22 C -0.202 4.202 23 C -0.160 4.160 24 C 0.004 3.996 25 Cl -0.044 7.044 26 C -0.119 4.119 27 H 0.256 0.744 28 H 0.359 0.641 29 H 0.091 0.909 30 H 0.039 0.961 31 H 0.071 0.929 32 H 0.030 0.970 33 H 0.046 0.954 34 H 0.095 0.905 35 H 0.412 0.588 36 H 0.218 0.782 37 H 0.172 0.828 38 H 0.116 0.884 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.815 -6.374 5.064 32.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.248 4.248 3 Si 0.764 3.236 4 H -0.215 1.215 5 H -0.220 1.220 6 H -0.193 1.193 7 C -0.344 4.344 8 H 0.086 0.914 9 N -0.396 5.396 10 C 0.065 3.935 11 H 0.078 0.922 12 C -0.167 4.167 13 C -0.147 4.147 14 C -0.151 4.151 15 C 0.045 3.955 16 H 0.065 0.935 17 N -0.357 5.357 18 C 0.363 3.637 19 O -0.436 6.436 20 C -0.429 4.429 21 S 0.579 5.421 22 C -0.340 4.340 23 C -0.190 4.190 24 C -0.039 4.039 25 Cl -0.015 7.015 26 C -0.158 4.158 27 H 0.065 0.935 28 H 0.193 0.807 29 H 0.109 0.891 30 H 0.058 0.942 31 H 0.090 0.910 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.114 0.886 35 H 0.249 0.751 36 H 0.235 0.765 37 H 0.189 0.811 38 H 0.134 0.866 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 30.894 -7.200 5.067 32.124 hybrid contribution 0.072 3.121 -0.668 3.193 sum 30.966 -4.079 4.399 31.542 Atomic orbital electron populations 1.69821 1.06583 1.26170 1.60740 1.25210 0.95769 0.99971 1.03815 0.85737 0.78364 0.81867 0.77660 1.21506 1.22013 1.19297 1.19101 0.82710 0.93350 1.39250 0.91405 1.43000 1.02448 1.04094 1.90015 1.20479 0.90921 0.87175 0.94964 0.92236 1.22042 0.99370 0.98574 0.96717 1.21333 0.95011 0.99116 0.99279 1.21787 0.97238 1.01781 0.94245 1.20872 0.81938 0.98880 0.93838 0.93531 1.45765 1.18917 1.16841 1.54179 1.17244 0.83986 0.82457 0.79982 1.90898 1.68272 1.43720 1.40756 1.24559 1.01436 1.02307 1.14549 1.82788 1.05467 1.13235 1.40595 1.25749 1.05992 0.97503 1.04739 1.19913 0.96386 1.01584 1.01110 1.20774 0.95620 0.89359 0.98191 1.98404 1.91134 1.39686 1.72252 1.22029 0.95190 0.99912 0.98647 0.93520 0.80737 0.89090 0.94246 0.91040 0.95143 0.93556 0.88632 0.75119 0.76489 0.81106 0.86590 0.91379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.33 13.97 21.65 0.30 -64.03 16 2 C -0.06 -3.42 5.50 84.86 0.47 -2.95 16 3 Si 0.93 49.63 27.74 68.60 1.90 51.54 16 4 H -0.29 -15.40 7.11 99.48 0.71 -14.69 16 5 H -0.29 -15.58 7.11 99.48 0.71 -14.87 16 6 H -0.27 -13.59 6.52 99.48 0.65 -12.95 16 7 C -0.21 -12.15 10.41 84.03 0.87 -11.28 16 8 H 0.07 4.14 8.06 -2.91 -0.02 4.12 16 9 N -0.75 -35.16 4.08 -322.93 -1.32 -36.48 16 10 C 0.17 6.00 3.10 44.99 0.14 6.14 16 11 H 0.06 2.11 8.08 -2.39 -0.02 2.09 16 12 C -0.13 -3.97 5.61 30.59 0.17 -3.80 16 13 C -0.11 -3.45 5.77 30.59 0.18 -3.27 16 14 C -0.11 -3.04 5.49 30.59 0.17 -2.87 16 15 C 0.15 4.35 2.28 44.99 0.10 4.45 16 16 H 0.05 1.83 5.94 -2.39 -0.01 1.82 16 17 N -0.71 -16.68 5.07 -446.74 -2.27 -18.94 16 18 C 0.58 16.77 7.74 86.38 0.67 17.44 16 19 O -0.56 -21.65 14.75 -4.41 -0.07 -21.72 16 20 C -0.31 -6.73 6.45 24.07 0.16 -6.58 16 21 S 0.31 3.17 22.15 -56.49 -1.25 1.92 16 22 C -0.20 -1.60 10.92 66.80 0.73 -0.87 16 23 C -0.16 -2.18 10.06 21.10 0.21 -1.97 16 24 C 0.00 0.10 6.39 21.78 0.14 0.24 16 25 Cl -0.04 -1.19 27.24 -2.72 -0.07 -1.27 16 26 C -0.12 -3.10 5.08 30.59 0.16 -2.94 16 27 H 0.26 16.12 8.31 -92.71 -0.77 15.35 16 28 H 0.36 17.29 3.92 -92.71 -0.36 16.93 16 29 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 30 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.03 1.20 7.60 -2.39 -0.02 1.19 16 33 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.41 6.35 7.71 -92.70 -0.71 5.64 16 36 H 0.22 -0.02 8.06 -2.91 -0.02 -0.05 16 37 H 0.17 1.66 8.06 -2.91 -0.02 1.63 16 38 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -79.88 343.27 1.35 -78.53 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -0.05 Total: 18.72 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: 4.16 Total: -8.26 kcal Atomic # 7 Polarization: -116.18 SS G_CDS: -3.28 Total: -119.46 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.07 Total: -21.72 kcal Atomic # 14 Polarization: 49.63 SS G_CDS: 1.90 Total: 51.54 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -1.25 Total: 1.92 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.07 Total: -1.27 kcal Total: -79.88 1.35 -78.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981103195.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.468 kcal (2) G-P(sol) polarization free energy of solvation -79.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds