Wall clock time and date at job start Tue Mar 31 2020 15:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 120.00140 * 2 1 4 4 H 1.48496 * 109.47289 * 239.99996 * 3 2 1 5 5 H 1.48499 * 109.47086 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47021 * 119.99802 * 3 2 1 7 7 C 1.38815 * 119.99804 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99615 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99914 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99629 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.47212 * 325.00109 * 10 9 7 12 12 C 1.53002 * 109.47035 * 85.00344 * 10 9 7 13 13 C 1.52996 * 109.46969 * 179.97438 * 12 10 9 14 14 C 1.52992 * 109.47224 * 299.99553 * 13 12 10 15 15 C 1.53002 * 109.46783 * 60.00333 * 14 13 12 16 16 H 1.09004 * 109.47059 * 60.00217 * 15 14 13 17 17 N 1.46508 * 109.46899 * 179.97438 * 15 14 13 18 18 C 1.34767 * 120.00291 * 274.99983 * 17 15 14 19 19 O 1.21717 * 120.00401 * 0.02562 * 18 17 15 20 20 C 1.46443 * 119.99972 * 180.02562 * 18 17 15 21 21 S 1.75824 * 125.46235 * 359.68929 * 20 18 17 22 22 C 1.70610 * 91.58508 * 179.97438 * 21 20 18 23 23 C 1.33766 * 110.99921 * 0.33090 * 22 21 20 24 24 C 1.36799 * 125.45993 * 180.02562 * 20 18 17 25 25 Cl 1.73591 * 123.38112 * 359.97438 * 24 20 18 26 26 C 1.52996 * 109.47340 * 299.99422 * 15 14 13 27 27 H 0.97000 * 119.99762 * 0.02562 * 1 2 3 28 28 H 0.97000 * 120.00553 * 359.97438 * 9 7 2 29 29 H 1.09004 * 109.46930 * 299.99770 * 12 10 9 30 30 H 1.09004 * 109.47059 * 59.99372 * 12 10 9 31 31 H 1.08996 * 109.47134 * 60.00388 * 13 12 10 32 32 H 1.09001 * 109.46997 * 179.97438 * 13 12 10 33 33 H 1.09002 * 109.47103 * 180.02562 * 14 13 12 34 34 H 1.08996 * 109.47747 * 300.00459 * 14 13 12 35 35 H 0.97006 * 119.99732 * 95.00111 * 17 15 14 36 36 H 1.08008 * 124.49915 * 180.02562 * 22 21 20 37 37 H 1.08001 * 122.45050 * 179.72392 * 23 22 21 38 38 H 1.08992 * 109.47346 * 300.00686 * 26 15 14 39 39 H 1.09001 * 109.47364 * 179.97438 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9688 -3.5506 -0.5889 12 6 2.4219 -4.0357 1.4376 13 6 3.1864 -5.3610 1.4376 14 6 2.3087 -6.4560 0.8283 15 6 1.9449 -6.0771 -0.6088 16 1 2.8556 -5.9714 -1.1983 17 7 1.1049 -7.1260 -1.1925 18 6 1.6745 -8.2081 -1.7590 19 8 2.8867 -8.3144 -1.7853 20 6 0.8348 -9.2562 -2.3430 21 16 -0.9231 -9.2540 -2.3776 22 6 -0.9562 -10.7537 -3.1903 23 6 0.2827 -11.2105 -3.4042 24 6 1.2924 -10.3971 -2.9433 25 17 2.9775 -10.7807 -3.1064 26 6 1.1804 -4.7519 -0.6089 27 1 -0.4850 0.8401 -0.0004 28 1 0.3556 -2.3881 0.0005 29 1 3.0469 -3.2553 1.8719 30 1 1.5111 -4.1418 2.0270 31 1 4.0971 -5.2551 0.8482 32 1 3.4459 -5.6306 2.4614 33 1 2.8532 -7.4003 0.8287 34 1 1.3980 -6.5618 1.4177 35 1 0.1388 -7.0416 -1.1713 36 1 -1.8579 -11.2685 -3.4878 37 1 0.4764 -12.1491 -3.9021 38 1 0.2697 -4.8577 -0.0194 39 1 0.9216 -4.4818 -1.6327 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981103196.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:40 Heat of formation + Delta-G solvation = -29.658006 kcal Electronic energy + Delta-G solvation = -22869.900046 eV Core-core repulsion = 19349.840612 eV Total energy + Delta-G solvation = -3520.059434 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.16746 -39.57105 -38.64862 -37.07853 -36.23137 -34.86687 -32.95115 -31.57701 -30.21625 -29.27908 -26.10110 -25.66242 -23.60506 -23.05282 -21.77503 -21.11141 -20.44862 -19.74020 -18.97743 -17.65951 -17.04416 -16.76482 -16.27336 -16.24661 -15.68783 -15.32585 -15.10282 -15.04428 -14.74519 -14.51439 -14.43502 -14.18368 -13.79418 -13.54566 -13.39158 -12.89947 -12.78857 -12.51954 -12.29704 -12.28159 -12.18640 -12.05167 -11.96806 -11.84303 -11.65020 -11.48187 -11.38035 -10.94290 -10.85123 -10.23351 -9.88358 -9.51160 -8.98789 -7.92803 -5.20436 -0.69974 0.13025 0.71660 1.18776 1.42302 1.48111 1.50252 1.56191 1.99884 2.03794 2.57641 3.40334 3.59580 3.68895 3.85853 3.98568 4.04564 4.12898 4.27534 4.30888 4.42808 4.52760 4.57578 4.65757 4.68207 4.76630 4.92750 4.99438 5.01504 5.10657 5.17217 5.22201 5.35549 5.41196 5.51021 5.53880 5.66016 6.29889 6.40694 7.08500 7.36414 8.11949 8.36056 9.30356 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.020946 B = 0.002583 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.434984 B =10838.201768 C =11415.863389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.968 3.032 4 H -0.280 1.280 5 H -0.295 1.295 6 H -0.279 1.279 7 C -0.238 4.238 8 H 0.071 0.929 9 N -0.735 5.735 10 C 0.178 3.822 11 H 0.036 0.964 12 C -0.126 4.126 13 C -0.106 4.106 14 C -0.116 4.116 15 C 0.161 3.839 16 H 0.072 0.928 17 N -0.710 5.710 18 C 0.583 3.417 19 O -0.550 6.550 20 C -0.305 4.305 21 S 0.294 5.706 22 C -0.202 4.202 23 C -0.158 4.158 24 C 0.007 3.993 25 Cl -0.037 7.037 26 C -0.116 4.116 27 H 0.251 0.749 28 H 0.374 0.626 29 H 0.041 0.959 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.407 0.593 36 H 0.216 0.784 37 H 0.173 0.827 38 H 0.077 0.923 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.363 -26.616 -4.855 27.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.266 4.266 3 Si 0.797 3.203 4 H -0.207 1.207 5 H -0.221 1.221 6 H -0.206 1.206 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.375 5.375 10 C 0.069 3.931 11 H 0.054 0.946 12 C -0.166 4.166 13 C -0.145 4.145 14 C -0.155 4.155 15 C 0.056 3.944 16 H 0.090 0.910 17 N -0.361 5.361 18 C 0.370 3.630 19 O -0.430 6.430 20 C -0.426 4.426 21 S 0.561 5.439 22 C -0.340 4.340 23 C -0.188 4.188 24 C -0.036 4.036 25 Cl -0.008 7.008 26 C -0.155 4.155 27 H 0.059 0.941 28 H 0.206 0.794 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.244 0.756 36 H 0.233 0.767 37 H 0.191 0.809 38 H 0.096 0.904 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.343 -25.583 -4.388 26.318 hybrid contribution 1.016 0.200 -0.566 1.180 sum -3.327 -25.384 -4.954 26.076 Atomic orbital electron populations 1.69793 1.06397 1.26012 1.59661 1.25479 0.96358 1.00785 1.03974 0.85294 0.77277 0.79634 0.78075 1.20669 1.22118 1.20555 1.19542 0.91296 0.85330 1.40842 0.91056 1.42556 1.05459 1.00737 1.88730 1.20295 0.93804 0.84708 0.94294 0.94609 1.22097 0.99696 0.96337 0.98510 1.21405 0.98052 0.93702 1.01295 1.21812 1.00574 0.98394 0.94689 1.20804 0.93649 0.85444 0.94481 0.91000 1.45848 1.10672 1.20416 1.59163 1.17094 0.87066 0.81269 0.77615 1.90863 1.14639 1.78355 1.59108 1.24553 1.00780 1.01711 1.15561 1.83075 0.94477 1.16097 1.50284 1.25727 1.03038 1.01226 1.04058 1.19937 0.90071 1.03132 1.05681 1.20724 0.87966 0.94651 1.00300 1.98397 1.13076 1.93429 1.95925 1.21891 0.99221 0.92847 1.01492 0.94057 0.79366 0.93982 0.92659 0.92382 0.90526 0.92028 0.90614 0.75641 0.76740 0.80919 0.90412 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.53 13.06 21.65 0.28 -58.24 16 2 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 3 Si 0.97 46.19 29.55 68.60 2.03 48.22 16 4 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 5 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 6 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 7 C -0.24 -13.17 9.93 84.03 0.83 -12.34 16 8 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 9 N -0.74 -36.34 5.12 -322.92 -1.65 -38.00 16 10 C 0.18 6.86 2.77 44.99 0.12 6.99 16 11 H 0.04 1.47 8.08 -2.39 -0.02 1.45 16 12 C -0.13 -4.35 5.50 30.59 0.17 -4.18 16 13 C -0.11 -2.90 5.92 30.59 0.18 -2.72 16 14 C -0.12 -2.96 5.49 30.59 0.17 -2.80 16 15 C 0.16 4.41 2.45 44.99 0.11 4.52 16 16 H 0.07 2.29 7.58 -2.39 -0.02 2.27 16 17 N -0.71 -16.69 5.07 -446.72 -2.27 -18.95 16 18 C 0.58 15.61 7.74 86.38 0.67 16.28 16 19 O -0.55 -18.68 14.75 -4.40 -0.06 -18.75 16 20 C -0.30 -6.39 6.45 24.07 0.16 -6.24 16 21 S 0.29 3.40 22.15 -56.49 -1.25 2.14 16 22 C -0.20 -1.71 10.92 66.80 0.73 -0.98 16 23 C -0.16 -2.05 10.06 21.10 0.21 -1.83 16 24 C 0.01 0.15 6.39 21.78 0.14 0.29 16 25 Cl -0.04 -0.90 27.24 -2.72 -0.07 -0.97 16 26 C -0.12 -3.56 4.86 30.59 0.15 -3.41 16 27 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 28 H 0.37 19.60 7.80 -92.71 -0.72 18.87 16 29 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 30 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.41 7.43 7.71 -92.70 -0.71 6.72 16 36 H 0.22 0.18 8.06 -2.91 -0.02 0.16 16 37 H 0.17 1.50 8.06 -2.91 -0.02 1.47 16 38 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -70.18 350.82 0.76 -69.42 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: -0.35 Total: 25.28 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: 4.11 Total: -10.15 kcal Atomic # 7 Polarization: -111.56 SS G_CDS: -3.64 Total: -115.19 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.06 Total: -18.75 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Atomic # 16 Polarization: 3.40 SS G_CDS: -1.25 Total: 2.14 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -0.07 Total: -0.97 kcal Total: -70.18 0.76 -69.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981103196.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.762 kcal (2) G-P(sol) polarization free energy of solvation -70.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds