Wall clock time and date at job start Tue Mar 31 2020 15:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86795 * 120.00054 * 2 1 4 4 H 1.48497 * 109.47113 * 269.99820 * 3 2 1 5 5 H 1.48502 * 109.47056 * 29.99616 * 3 2 1 6 6 H 1.48499 * 109.47499 * 149.99465 * 3 2 1 7 7 C 1.38811 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99945 * 0.02562 * 7 2 1 9 9 N 1.36940 * 120.00230 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99991 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47391 * 325.00261 * 10 9 7 12 12 C 1.53000 * 109.46840 * 85.00591 * 10 9 7 13 13 C 1.53001 * 109.46886 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46963 * 299.99499 * 13 12 10 15 15 C 1.52997 * 109.47092 * 60.00194 * 14 13 12 16 16 H 1.09001 * 109.47375 * 180.02562 * 15 14 13 17 17 N 1.46506 * 109.47277 * 60.00025 * 15 14 13 18 18 C 1.34774 * 120.00023 * 84.99860 * 17 15 14 19 19 O 1.21644 * 119.99653 * 0.02562 * 18 17 15 20 20 C 1.47156 * 120.00206 * 180.02562 * 18 17 15 21 21 C 1.36051 * 123.46367 * 0.02850 * 20 18 17 22 22 S 1.70446 * 110.83030 * 180.02562 * 21 20 18 23 23 C 1.75508 * 92.45653 * 359.97438 * 22 21 20 24 24 C 1.32850 * 110.58062 * 359.71756 * 23 22 21 25 25 Cl 1.73593 * 123.46746 * 180.24669 * 24 23 22 26 26 C 1.53002 * 109.46799 * 205.00357 * 10 9 7 27 27 H 0.97001 * 120.00026 * 0.02562 * 1 2 3 28 28 H 0.97002 * 119.99599 * 0.02562 * 9 7 2 29 29 H 1.09001 * 109.47194 * 299.99493 * 12 10 9 30 30 H 1.08992 * 109.47399 * 59.99666 * 12 10 9 31 31 H 1.09000 * 109.47437 * 180.02562 * 13 12 10 32 32 H 1.09002 * 109.47508 * 59.99571 * 13 12 10 33 33 H 1.09002 * 109.47067 * 300.00341 * 14 13 12 34 34 H 1.09000 * 109.47312 * 180.02562 * 14 13 12 35 35 H 0.97001 * 119.99986 * 265.00712 * 17 15 14 36 36 H 1.08003 * 124.58549 * 359.97438 * 21 20 18 37 37 H 1.08001 * 124.70536 * 180.02562 * 23 22 21 38 38 H 1.09002 * 109.47075 * 299.99543 * 26 10 9 39 39 H 1.08996 * 109.47407 * 60.00500 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4475 2.6526 0.7000 6 1 3.5476 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0000 11 1 3.5649 -3.2064 0.5898 12 6 4.2577 -2.9756 -1.4370 13 6 5.0221 -4.3010 -1.4369 14 6 6.4096 -4.0895 -0.8277 15 6 6.2640 -3.5847 0.6093 16 1 7.2524 -3.4335 1.0432 17 7 5.5281 -4.5729 1.4019 18 6 6.1832 -5.6056 1.9681 19 8 7.3856 -5.7169 1.8214 20 6 5.4440 -6.5986 2.7638 21 6 4.1007 -6.5430 2.9727 22 16 3.5828 -7.8494 3.9371 23 6 5.2093 -8.4955 4.0685 24 6 6.0689 -7.7363 3.3980 25 17 7.7691 -8.0728 3.3000 26 6 5.4995 -2.2587 0.6092 27 1 -0.4850 0.8401 -0.0004 28 1 3.8646 -0.3621 -0.0004 29 1 3.2693 -3.1268 -1.8709 30 1 4.8048 -2.2402 -2.0267 31 1 5.1263 -4.6604 -2.4607 32 1 4.4746 -5.0363 -0.8473 33 1 6.9571 -3.3542 -1.4173 34 1 6.9544 -5.0335 -0.8280 35 1 4.5693 -4.4839 1.5190 36 1 3.4507 -5.7745 2.5810 37 1 5.4737 -9.3891 4.6143 38 1 6.0467 -1.5233 0.0193 39 1 5.3958 -1.8992 1.6329 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981153845.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:55 Heat of formation + Delta-G solvation = -4.949786 kcal Electronic energy + Delta-G solvation = -23472.580848 eV Core-core repulsion = 19953.592843 eV Total energy + Delta-G solvation = -3518.988005 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.31132 -38.47000 -37.22939 -36.05245 -34.63791 -33.13462 -31.41721 -30.60492 -29.22841 -28.31680 -25.30269 -23.54969 -22.48403 -21.84734 -20.98479 -19.69487 -18.97023 -18.50222 -17.57211 -17.31674 -15.61134 -15.41900 -15.22724 -14.87102 -14.56479 -14.06260 -13.75485 -13.70765 -13.63576 -13.37746 -13.17324 -12.84668 -12.67703 -12.27012 -11.95656 -11.84482 -11.77015 -11.65251 -11.30111 -11.03945 -10.94408 -10.93500 -10.45781 -10.29975 -10.12248 -9.80230 -9.74973 -9.63175 -9.31519 -9.02167 -8.91523 -8.65816 -7.33539 -5.83353 -3.19194 0.38851 0.94358 1.37174 1.53367 2.36683 3.15236 3.25482 3.33277 3.36422 3.41783 4.31505 4.53748 4.73862 4.88896 4.96898 5.01351 5.04931 5.08356 5.40374 5.45374 5.49675 5.52829 5.58338 5.59658 5.74396 5.85629 5.93378 5.99953 6.10774 6.20959 6.36989 6.38392 6.58335 6.60028 6.80534 6.94859 7.53256 7.91691 8.23019 8.35643 9.13994 9.86881 10.06409 11.34830 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.016266 B = 0.003275 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.005440 B = 8548.710629 C = 9571.995493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.006 3.994 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.089 0.911 9 N -0.749 5.749 10 C 0.186 3.814 11 H 0.048 0.952 12 C -0.137 4.137 13 C -0.115 4.115 14 C -0.128 4.128 15 C 0.154 3.846 16 H 0.087 0.913 17 N -0.712 5.712 18 C 0.573 3.427 19 O -0.524 6.524 20 C -0.148 4.148 21 C -0.203 4.203 22 S 0.235 5.765 23 C -0.242 4.242 24 C -0.007 4.007 25 Cl -0.020 7.020 26 C -0.138 4.138 27 H 0.260 0.740 28 H 0.361 0.639 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.401 0.599 36 H 0.181 0.819 37 H 0.178 0.822 38 H 0.076 0.924 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.321 -17.160 6.782 21.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.190 4.190 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.375 4.375 8 H 0.107 0.893 9 N -0.391 5.391 10 C 0.076 3.924 11 H 0.066 0.934 12 C -0.177 4.177 13 C -0.153 4.153 14 C -0.167 4.167 15 C 0.050 3.950 16 H 0.105 0.895 17 N -0.365 5.365 18 C 0.358 3.642 19 O -0.402 6.402 20 C -0.166 4.166 21 C -0.342 4.342 22 S 0.500 5.500 23 C -0.378 4.378 24 C -0.045 4.045 25 Cl 0.009 6.991 26 C -0.177 4.177 27 H 0.070 0.930 28 H 0.194 0.806 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.237 0.763 36 H 0.199 0.801 37 H 0.195 0.805 38 H 0.095 0.905 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.680 -17.755 7.239 21.948 hybrid contribution 1.451 1.782 -0.619 2.379 sum 12.131 -15.973 6.620 21.122 Atomic orbital electron populations 1.69695 1.05129 1.25897 1.57355 1.24666 0.95211 0.97236 1.01913 0.86559 0.79217 0.84987 0.77797 1.21098 1.21771 1.20297 1.19038 0.80546 0.94627 1.43274 0.89275 1.42786 1.04007 1.01963 1.90326 1.20114 0.89849 0.89043 0.93395 0.93429 1.22250 1.00162 0.95412 0.99913 1.21499 0.95485 0.98398 0.99966 1.21911 0.97868 1.01541 0.95348 1.20944 0.95882 0.87256 0.90932 0.89507 1.46040 1.12071 1.26065 1.52309 1.17416 0.86878 0.80902 0.79023 1.90828 1.13585 1.74911 1.60827 1.20023 0.92637 0.98495 1.05477 1.25775 0.98676 1.05235 1.04515 1.83228 1.05467 1.16024 1.45255 1.25453 0.96840 1.06692 1.08837 1.20641 0.87902 0.95520 1.00464 1.98396 1.09599 1.94141 1.97009 1.22190 0.97564 0.95667 1.02252 0.93025 0.80599 0.91581 0.92584 0.92644 0.92516 0.91131 0.91826 0.76257 0.80143 0.80464 0.90515 0.91115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.45 13.97 55.49 0.78 -27.67 16 2 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 3 Si 0.88 21.50 27.73 -169.99 -4.71 16.78 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.31 6.52 56.52 0.37 -5.94 16 7 C -0.25 -6.54 10.41 -15.06 -0.16 -6.70 16 8 H 0.09 2.54 8.06 -52.49 -0.42 2.11 16 9 N -0.75 -16.53 4.92 -53.42 -0.26 -16.79 16 10 C 0.19 3.19 2.60 -67.93 -0.18 3.01 16 11 H 0.05 0.82 6.44 -51.93 -0.33 0.49 16 12 C -0.14 -2.21 5.50 -26.73 -0.15 -2.35 16 13 C -0.12 -1.53 5.77 -26.73 -0.15 -1.68 16 14 C -0.13 -1.63 5.60 -26.73 -0.15 -1.78 16 15 C 0.15 2.02 2.78 -67.90 -0.19 1.83 16 16 H 0.09 1.18 7.58 -51.93 -0.39 0.79 16 17 N -0.71 -8.99 4.20 -54.93 -0.23 -9.22 16 18 C 0.57 7.92 7.76 -12.64 -0.10 7.82 16 19 O -0.52 -8.61 14.72 5.24 0.08 -8.54 16 20 C -0.15 -1.75 5.98 -104.61 -0.63 -2.38 16 21 C -0.20 -1.91 10.38 29.95 0.31 -1.60 16 22 S 0.24 1.72 23.02 -107.50 -2.47 -0.75 16 23 C -0.24 -2.05 11.00 28.88 0.32 -1.73 16 24 C -0.01 -0.07 6.49 -38.99 -0.25 -0.33 16 25 Cl -0.02 -0.25 27.24 -51.86 -1.41 -1.66 16 26 C -0.14 -1.98 5.08 -26.70 -0.14 -2.11 16 27 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 28 H 0.36 7.95 5.66 -40.82 -0.23 7.71 16 29 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.75 7.60 -51.93 -0.39 0.35 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.40 4.70 5.36 -40.82 -0.22 4.48 16 36 H 0.18 1.45 7.01 -52.48 -0.37 1.09 16 37 H 0.18 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 342.48 15.07 5.16 5.16 Total: -1.00 -31.82 342.48 -9.55 -41.37 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -4.91 Total: 9.25 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -1.55 Total: -7.93 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: 0.28 Total: -53.69 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.08 Total: -8.54 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.71 Total: 16.78 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -2.47 Total: -0.75 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -1.41 Total: -1.66 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.82 -9.55 -41.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981153845.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.419 kcal (2) G-P(sol) polarization free energy of solvation -31.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds