Wall clock time and date at job start Tue Mar 31 2020 15:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86795 * 120.00054 * 2 1 4 4 H 1.48497 * 109.47113 * 269.99820 * 3 2 1 5 5 H 1.48502 * 109.47056 * 29.99616 * 3 2 1 6 6 H 1.48499 * 109.47499 * 149.99465 * 3 2 1 7 7 C 1.38811 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99945 * 0.02562 * 7 2 1 9 9 N 1.36940 * 120.00230 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99991 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47391 * 325.00261 * 10 9 7 12 12 C 1.53000 * 109.46840 * 85.00591 * 10 9 7 13 13 C 1.53001 * 109.46886 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46963 * 299.99499 * 13 12 10 15 15 C 1.52997 * 109.47092 * 60.00194 * 14 13 12 16 16 H 1.09001 * 109.47375 * 180.02562 * 15 14 13 17 17 N 1.46506 * 109.47277 * 60.00025 * 15 14 13 18 18 C 1.34774 * 120.00023 * 84.99860 * 17 15 14 19 19 O 1.21644 * 119.99653 * 0.02562 * 18 17 15 20 20 C 1.47156 * 120.00206 * 180.02562 * 18 17 15 21 21 C 1.36051 * 123.46367 * 0.02850 * 20 18 17 22 22 S 1.70446 * 110.83030 * 180.02562 * 21 20 18 23 23 C 1.75508 * 92.45653 * 359.97438 * 22 21 20 24 24 C 1.32850 * 110.58062 * 359.71756 * 23 22 21 25 25 Cl 1.73593 * 123.46746 * 180.24669 * 24 23 22 26 26 C 1.53002 * 109.46799 * 205.00357 * 10 9 7 27 27 H 0.97001 * 120.00026 * 0.02562 * 1 2 3 28 28 H 0.97002 * 119.99599 * 0.02562 * 9 7 2 29 29 H 1.09001 * 109.47194 * 299.99493 * 12 10 9 30 30 H 1.08992 * 109.47399 * 59.99666 * 12 10 9 31 31 H 1.09000 * 109.47437 * 180.02562 * 13 12 10 32 32 H 1.09002 * 109.47508 * 59.99571 * 13 12 10 33 33 H 1.09002 * 109.47067 * 300.00341 * 14 13 12 34 34 H 1.09000 * 109.47312 * 180.02562 * 14 13 12 35 35 H 0.97001 * 119.99986 * 265.00712 * 17 15 14 36 36 H 1.08003 * 124.58549 * 359.97438 * 21 20 18 37 37 H 1.08001 * 124.70536 * 180.02562 * 23 22 21 38 38 H 1.09002 * 109.47075 * 299.99543 * 26 10 9 39 39 H 1.08996 * 109.47407 * 60.00500 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4475 2.6526 0.7000 6 1 3.5476 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0000 11 1 3.5649 -3.2064 0.5898 12 6 4.2577 -2.9756 -1.4370 13 6 5.0221 -4.3010 -1.4369 14 6 6.4096 -4.0895 -0.8277 15 6 6.2640 -3.5847 0.6093 16 1 7.2524 -3.4335 1.0432 17 7 5.5281 -4.5729 1.4019 18 6 6.1832 -5.6056 1.9681 19 8 7.3856 -5.7169 1.8214 20 6 5.4440 -6.5986 2.7638 21 6 4.1007 -6.5430 2.9727 22 16 3.5828 -7.8494 3.9371 23 6 5.2093 -8.4955 4.0685 24 6 6.0689 -7.7363 3.3980 25 17 7.7691 -8.0728 3.3000 26 6 5.4995 -2.2587 0.6092 27 1 -0.4850 0.8401 -0.0004 28 1 3.8646 -0.3621 -0.0004 29 1 3.2693 -3.1268 -1.8709 30 1 4.8048 -2.2402 -2.0267 31 1 5.1263 -4.6604 -2.4607 32 1 4.4746 -5.0363 -0.8473 33 1 6.9571 -3.3542 -1.4173 34 1 6.9544 -5.0335 -0.8280 35 1 4.5693 -4.4839 1.5190 36 1 3.4507 -5.7745 2.5810 37 1 5.4737 -9.3891 4.6143 38 1 6.0467 -1.5233 0.0193 39 1 5.3958 -1.8992 1.6329 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981153845.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:54 Heat of formation + Delta-G solvation = -24.789363 kcal Electronic energy + Delta-G solvation = -23473.441157 eV Core-core repulsion = 19953.592843 eV Total energy + Delta-G solvation = -3519.848314 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.36340 -39.56158 -38.18343 -36.88671 -36.22968 -34.45589 -33.23829 -31.56586 -30.38193 -29.68057 -26.14956 -25.35651 -23.57535 -22.91038 -22.38518 -20.67564 -20.17782 -19.63505 -19.07916 -18.16918 -16.90094 -16.63427 -16.35732 -16.08150 -15.91412 -15.37011 -15.09457 -14.75530 -14.62391 -14.47878 -14.36608 -14.12504 -13.86116 -13.66585 -13.07652 -13.05619 -12.98185 -12.84988 -12.53567 -12.47417 -12.39084 -11.96363 -11.80791 -11.74307 -11.63033 -11.51818 -11.03454 -10.88050 -10.82860 -10.11990 -9.96162 -9.36503 -9.27599 -7.99334 -5.31844 -0.35475 0.26618 0.65693 0.70555 1.40521 1.42602 1.49914 1.60949 2.18045 2.27592 2.51069 3.32744 3.45245 3.60680 3.83610 3.92210 3.92806 4.18962 4.25925 4.29000 4.33902 4.35851 4.52648 4.65398 4.70145 4.74245 4.80432 4.85611 4.94592 5.09583 5.17356 5.20832 5.37407 5.48932 5.50322 5.64343 5.81484 6.24873 6.52381 7.11582 7.21716 7.88377 8.06334 9.22018 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.016266 B = 0.003275 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.005440 B = 8548.710629 C = 9571.995493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.064 4.064 3 Si 0.950 3.050 4 H -0.283 1.283 5 H -0.300 1.300 6 H -0.250 1.250 7 C -0.223 4.223 8 H 0.061 0.939 9 N -0.752 5.752 10 C 0.180 3.820 11 H 0.047 0.953 12 C -0.129 4.129 13 C -0.105 4.105 14 C -0.121 4.121 15 C 0.160 3.840 16 H 0.086 0.914 17 N -0.708 5.708 18 C 0.572 3.428 19 O -0.557 6.557 20 C -0.177 4.177 21 C -0.208 4.208 22 S 0.306 5.694 23 C -0.235 4.235 24 C -0.035 4.035 25 Cl -0.039 7.039 26 C -0.126 4.126 27 H 0.256 0.744 28 H 0.364 0.636 29 H 0.038 0.962 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.083 0.917 34 H 0.059 0.941 35 H 0.405 0.595 36 H 0.191 0.809 37 H 0.202 0.798 38 H 0.088 0.912 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.307 -17.758 7.380 22.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.255 4.255 3 Si 0.778 3.222 4 H -0.209 1.209 5 H -0.228 1.228 6 H -0.174 1.174 7 C -0.354 4.354 8 H 0.079 0.921 9 N -0.395 5.395 10 C 0.072 3.928 11 H 0.064 0.936 12 C -0.169 4.169 13 C -0.144 4.144 14 C -0.160 4.160 15 C 0.055 3.945 16 H 0.104 0.896 17 N -0.361 5.361 18 C 0.358 3.642 19 O -0.437 6.437 20 C -0.195 4.195 21 C -0.347 4.347 22 S 0.572 5.428 23 C -0.371 4.371 24 C -0.073 4.073 25 Cl -0.011 7.011 26 C -0.164 4.164 27 H 0.065 0.935 28 H 0.198 0.802 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.242 0.758 36 H 0.208 0.792 37 H 0.219 0.781 38 H 0.106 0.894 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 11.708 -18.389 7.841 23.167 hybrid contribution 1.034 1.807 -0.764 2.218 sum 12.742 -16.581 7.077 22.077 Atomic orbital electron populations 1.69869 1.07086 1.26469 1.60107 1.25431 0.95989 1.01017 1.03083 0.85485 0.78804 0.80093 0.77847 1.20916 1.22751 1.17432 1.19015 0.82559 0.93335 1.40461 0.92140 1.42821 1.02457 1.03943 1.90236 1.20351 0.91031 0.87046 0.94382 0.93553 1.22092 0.99176 0.97025 0.98594 1.21403 0.95428 0.96640 1.00891 1.21856 0.97323 1.01737 0.95058 1.20864 0.95594 0.86704 0.91341 0.89597 1.45999 1.12183 1.25820 1.52076 1.17732 0.86638 0.81112 0.78758 1.90802 1.14943 1.75765 1.62151 1.19929 0.93479 0.98996 1.07084 1.26019 0.98070 1.06282 1.04352 1.83071 1.03519 1.13549 1.42703 1.25845 0.97259 1.06699 1.07266 1.20764 0.87462 0.96590 1.02457 1.98379 1.11253 1.94237 1.97221 1.22053 0.95673 0.96698 1.01998 0.93539 0.80243 0.94268 0.92348 0.91445 0.92458 0.89829 0.92197 0.75791 0.79226 0.78117 0.89351 0.91274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.40 13.97 21.65 0.30 -61.10 16 2 C -0.06 -3.63 5.50 84.86 0.47 -3.16 16 3 Si 0.95 44.13 27.73 68.60 1.90 46.03 16 4 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 6 H -0.25 -10.35 6.52 99.48 0.65 -9.71 16 7 C -0.22 -11.93 10.41 84.03 0.87 -11.06 16 8 H 0.06 3.53 8.06 -2.91 -0.02 3.51 16 9 N -0.75 -32.27 4.92 -322.94 -1.59 -33.86 16 10 C 0.18 5.94 2.60 44.99 0.12 6.06 16 11 H 0.05 1.55 6.44 -2.39 -0.02 1.54 16 12 C -0.13 -3.99 5.50 30.59 0.17 -3.82 16 13 C -0.11 -2.61 5.77 30.60 0.18 -2.44 16 14 C -0.12 -2.83 5.60 30.59 0.17 -2.66 16 15 C 0.16 3.90 2.78 45.01 0.13 4.03 16 16 H 0.09 2.20 7.58 -2.39 -0.02 2.18 16 17 N -0.71 -17.12 4.20 -445.96 -1.87 -19.00 16 18 C 0.57 15.47 7.76 86.59 0.67 16.14 16 19 O -0.56 -18.25 14.72 -4.17 -0.06 -18.31 16 20 C -0.18 -4.01 5.98 -19.86 -0.12 -4.13 16 21 C -0.21 -3.54 10.38 67.31 0.70 -2.84 16 22 S 0.31 3.60 23.02 -56.49 -1.30 2.30 16 23 C -0.23 -3.42 11.00 66.64 0.73 -2.69 16 24 C -0.03 -0.75 6.49 22.68 0.15 -0.60 16 25 Cl -0.04 -0.96 27.24 -2.72 -0.07 -1.03 16 26 C -0.13 -3.33 5.08 30.61 0.16 -3.18 16 27 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 28 H 0.36 15.18 5.66 -92.71 -0.52 14.66 16 29 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.06 1.42 7.60 -2.39 -0.02 1.40 16 33 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.40 9.04 5.36 -92.71 -0.50 8.55 16 36 H 0.19 2.73 7.01 -2.91 -0.02 2.71 16 37 H 0.20 1.84 8.06 -2.91 -0.02 1.82 16 38 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -69.79 342.48 1.71 -68.09 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: 0.01 Total: 27.23 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: 4.39 Total: -10.35 kcal Atomic # 7 Polarization: -110.80 SS G_CDS: -3.16 Total: -113.96 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.06 Total: -18.31 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.90 Total: 46.03 kcal Atomic # 16 Polarization: 3.60 SS G_CDS: -1.30 Total: 2.30 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -0.07 Total: -1.03 kcal Total: -69.79 1.71 -68.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981153845.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.296 kcal (2) G-P(sol) polarization free energy of solvation -69.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds