Wall clock time and date at job start Tue Mar 31 2020 15:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48498 * 109.47118 * 269.99878 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00398 * 3 2 1 6 6 H 1.48507 * 109.46904 * 150.00220 * 3 2 1 7 7 C 1.38817 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 359.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 180.27450 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.08994 * 109.47052 * 35.00019 * 10 9 7 12 12 C 1.53006 * 109.46692 * 274.99780 * 10 9 7 13 13 C 1.53012 * 109.46635 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.46981 * 60.00016 * 13 12 10 15 15 C 1.53001 * 109.47259 * 300.00142 * 14 13 12 16 16 H 1.09002 * 109.47065 * 180.02562 * 15 14 13 17 17 N 1.46495 * 109.47046 * 299.99692 * 15 14 13 18 18 C 1.34776 * 120.00412 * 275.00167 * 17 15 14 19 19 O 1.21709 * 119.99602 * 0.02562 * 18 17 15 20 20 C 1.46576 * 120.00352 * 179.97438 * 18 17 15 21 21 C 1.36668 * 125.45182 * 180.02562 * 20 18 17 22 22 C 1.37532 * 113.28552 * 180.02562 * 21 20 18 23 23 Cl 1.73607 * 122.45753 * 180.02562 * 22 21 20 24 24 C 1.33865 * 115.07890 * 359.97438 * 22 21 20 25 25 S 1.70615 * 110.96033 * 359.72700 * 24 22 21 26 26 C 1.52995 * 109.47024 * 155.00126 * 10 9 7 27 27 H 0.97000 * 120.00553 * 359.97438 * 1 2 3 28 28 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 29 29 H 1.08994 * 109.47567 * 299.99923 * 12 10 9 30 30 H 1.08991 * 109.47054 * 60.00626 * 12 10 9 31 31 H 1.08999 * 109.46647 * 180.02562 * 13 12 10 32 32 H 1.08999 * 109.47000 * 300.00691 * 13 12 10 33 33 H 1.09002 * 109.47185 * 59.99918 * 14 13 12 34 34 H 1.08998 * 109.47319 * 179.97438 * 14 13 12 35 35 H 0.97000 * 119.99698 * 95.00146 * 17 15 14 36 36 H 1.08001 * 123.35580 * 359.97438 * 21 20 18 37 37 H 1.07998 * 124.52092 * 180.02562 * 24 22 21 38 38 H 1.08999 * 109.47405 * 299.99602 * 26 10 9 39 39 H 1.09002 * 109.47452 * 59.99785 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2022 0.0051 10 6 4.1120 -2.4709 0.0107 11 1 3.5671 -3.2076 -0.5795 12 6 4.2522 -2.9725 1.4494 13 6 5.0166 -4.2980 1.4551 14 6 6.4063 -4.0878 0.8506 15 6 6.2661 -3.5861 -0.5880 16 1 7.2562 -3.4368 -1.0188 17 7 5.5333 -4.5760 -1.3812 18 6 6.1905 -5.6100 -1.9427 19 8 7.3928 -5.7216 -1.7905 20 6 5.4571 -6.6007 -2.7358 21 6 6.0090 -7.6886 -3.3522 22 6 5.0895 -8.4533 -4.0313 23 17 5.5319 -9.8906 -4.8987 24 6 3.8282 -8.0085 -3.9735 25 16 3.7255 -6.5841 -3.0400 26 6 5.5017 -2.2601 -0.5935 27 1 -0.4851 0.8400 0.0004 28 1 3.8646 -0.3621 0.0055 29 1 4.7971 -2.2359 2.0396 30 1 3.2622 -3.1227 1.8798 31 1 5.1161 -4.6555 2.4800 32 1 4.4713 -5.0345 0.8649 33 1 6.9517 -3.3512 1.4407 34 1 6.9511 -5.0318 0.8550 35 1 4.5750 -4.4872 -1.5022 36 1 7.0622 -7.9238 -3.3107 37 1 2.9870 -8.4900 -4.4498 38 1 5.4019 -1.9028 -1.6184 39 1 6.0466 -1.5234 -0.0033 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981366283.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:45 Heat of formation + Delta-G solvation = -7.914802 kcal Electronic energy + Delta-G solvation = -23189.397825 eV Core-core repulsion = 19670.281247 eV Total energy + Delta-G solvation = -3519.116578 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.31276 -38.68914 -37.78796 -36.26202 -34.69228 -33.21379 -31.43075 -30.64938 -29.36983 -28.36825 -25.45693 -23.55954 -22.49792 -21.88031 -21.02265 -19.73091 -19.28123 -18.77220 -17.65444 -16.59772 -16.09081 -15.52710 -15.47632 -15.00072 -14.60464 -14.16976 -13.98526 -13.78784 -13.63272 -13.52625 -13.11773 -12.89003 -12.71592 -12.34288 -12.01013 -11.91166 -11.71147 -11.62942 -11.32426 -11.15858 -11.02442 -10.98645 -10.50696 -10.33491 -10.19995 -10.12986 -9.78565 -9.63360 -9.35224 -9.08244 -8.95230 -8.80455 -7.34002 -5.83104 -3.19145 0.08450 0.90191 1.24434 1.82778 2.18354 2.99470 3.03711 3.33175 3.35996 3.41715 4.44052 4.53665 4.65659 4.82307 4.85164 4.95651 5.01679 5.26448 5.37283 5.41162 5.50942 5.54173 5.57283 5.69396 5.70891 5.80781 5.88794 5.95097 6.04850 6.16010 6.32561 6.35240 6.46340 6.56699 6.78339 6.92824 7.35646 7.91834 8.01825 8.35721 9.13877 9.86636 10.06020 11.35025 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.016920 B = 0.003051 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.487073 B = 9176.203081 C =10194.404967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.006 3.994 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.090 0.910 9 N -0.748 5.748 10 C 0.184 3.816 11 H 0.049 0.951 12 C -0.138 4.138 13 C -0.116 4.116 14 C -0.129 4.129 15 C 0.153 3.847 16 H 0.089 0.911 17 N -0.712 5.712 18 C 0.591 3.409 19 O -0.530 6.530 20 C -0.258 4.258 21 C -0.055 4.055 22 C -0.062 4.062 23 Cl -0.049 7.049 24 C -0.235 4.235 25 S 0.269 5.731 26 C -0.139 4.139 27 H 0.260 0.740 28 H 0.361 0.639 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.401 0.599 36 H 0.162 0.838 37 H 0.180 0.820 38 H 0.072 0.928 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.315 -16.252 -6.093 20.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.190 4.190 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.375 4.375 8 H 0.108 0.892 9 N -0.390 5.390 10 C 0.075 3.925 11 H 0.066 0.934 12 C -0.178 4.178 13 C -0.155 4.155 14 C -0.167 4.167 15 C 0.049 3.951 16 H 0.107 0.893 17 N -0.364 5.364 18 C 0.377 3.623 19 O -0.409 6.409 20 C -0.379 4.379 21 C -0.088 4.088 22 C -0.102 4.102 23 Cl -0.021 7.021 24 C -0.374 4.374 25 S 0.536 5.464 26 C -0.178 4.178 27 H 0.070 0.930 28 H 0.194 0.806 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.238 0.762 36 H 0.180 0.820 37 H 0.198 0.802 38 H 0.090 0.910 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.734 -15.515 -5.640 19.691 hybrid contribution 1.088 0.055 -0.593 1.240 sum 11.822 -15.460 -6.233 20.436 Atomic orbital electron populations 1.69694 1.05122 1.25894 1.57325 1.24672 0.95212 0.97229 1.01920 0.86563 0.79228 0.85009 0.77771 1.21092 1.21799 1.20298 1.19043 0.80513 0.94656 1.43259 0.89208 1.42780 1.04028 1.01906 1.90302 1.20124 0.89797 0.89164 0.93438 0.93355 1.22260 1.00238 0.95356 0.99926 1.21514 0.95385 0.98488 1.00083 1.21922 0.97993 1.01614 0.95208 1.21011 0.95932 0.87207 0.90962 0.89303 1.46086 1.12080 1.25945 1.52311 1.16815 0.86567 0.80438 0.78519 1.90827 1.13552 1.75227 1.61256 1.24647 0.98566 1.03569 1.11123 1.20466 1.01489 0.91943 0.94873 1.19529 0.93271 0.93960 1.03445 1.98372 1.93045 1.35733 1.74931 1.25328 1.00994 1.03556 1.07474 1.83570 1.02070 1.18635 1.42092 1.22204 0.97627 0.95537 1.02417 0.93023 0.80582 0.92532 0.91482 0.92497 0.92526 0.90915 0.91801 0.76231 0.82005 0.80234 0.90969 0.90312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.33 13.97 55.49 0.78 -27.55 16 2 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 3 Si 0.88 21.34 27.74 -169.99 -4.72 16.62 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.27 6.51 56.52 0.37 -5.90 16 7 C -0.24 -6.49 10.41 -15.06 -0.16 -6.65 16 8 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 9 N -0.75 -16.32 4.92 -53.42 -0.26 -16.59 16 10 C 0.18 3.13 2.60 -67.93 -0.18 2.95 16 11 H 0.05 0.83 6.44 -51.93 -0.33 0.49 16 12 C -0.14 -2.18 5.50 -26.72 -0.15 -2.32 16 13 C -0.12 -1.50 5.77 -26.73 -0.15 -1.66 16 14 C -0.13 -1.57 5.60 -26.73 -0.15 -1.72 16 15 C 0.15 1.93 2.78 -67.91 -0.19 1.74 16 16 H 0.09 1.14 7.57 -51.93 -0.39 0.75 16 17 N -0.71 -8.80 4.23 -55.12 -0.23 -9.04 16 18 C 0.59 7.80 7.75 -12.90 -0.10 7.70 16 19 O -0.53 -8.44 16.50 5.18 0.09 -8.35 16 20 C -0.26 -2.90 6.45 -36.79 -0.24 -3.13 16 21 C -0.05 -0.58 9.89 -40.41 -0.40 -0.98 16 22 C -0.06 -0.59 6.25 -41.37 -0.26 -0.85 16 23 Cl -0.05 -0.44 29.10 -51.86 -1.51 -1.95 16 24 C -0.23 -1.97 10.77 29.20 0.31 -1.66 16 25 S 0.27 2.44 22.15 -107.50 -2.38 0.06 16 26 C -0.14 -1.93 5.08 -26.71 -0.14 -2.07 16 27 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 28 H 0.36 7.84 5.66 -40.82 -0.23 7.61 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.72 7.60 -51.93 -0.39 0.33 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.40 4.75 5.98 -40.82 -0.24 4.51 16 36 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.18 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 346.43 15.07 5.22 5.22 Total: -1.00 -30.90 346.43 -9.90 -40.80 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -4.99 Total: 9.34 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -1.89 Total: -8.57 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: 0.28 Total: -53.17 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: 0.09 Total: -8.35 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.72 Total: 16.62 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -2.38 Total: 0.06 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.51 Total: -1.95 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.90 -9.90 -40.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981366283.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.885 kcal (2) G-P(sol) polarization free energy of solvation -30.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds