Wall clock time and date at job start Tue Mar 31 2020 15:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48498 * 109.47118 * 269.99878 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00398 * 3 2 1 6 6 H 1.48507 * 109.46904 * 150.00220 * 3 2 1 7 7 C 1.38817 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 359.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 180.27450 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.08994 * 109.47052 * 35.00019 * 10 9 7 12 12 C 1.53006 * 109.46692 * 274.99780 * 10 9 7 13 13 C 1.53012 * 109.46635 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.46981 * 60.00016 * 13 12 10 15 15 C 1.53001 * 109.47259 * 300.00142 * 14 13 12 16 16 H 1.09002 * 109.47065 * 180.02562 * 15 14 13 17 17 N 1.46495 * 109.47046 * 299.99692 * 15 14 13 18 18 C 1.34776 * 120.00412 * 275.00167 * 17 15 14 19 19 O 1.21709 * 119.99602 * 0.02562 * 18 17 15 20 20 C 1.46576 * 120.00352 * 179.97438 * 18 17 15 21 21 C 1.36668 * 125.45182 * 180.02562 * 20 18 17 22 22 C 1.37532 * 113.28552 * 180.02562 * 21 20 18 23 23 Cl 1.73607 * 122.45753 * 180.02562 * 22 21 20 24 24 C 1.33865 * 115.07890 * 359.97438 * 22 21 20 25 25 S 1.70615 * 110.96033 * 359.72700 * 24 22 21 26 26 C 1.52995 * 109.47024 * 155.00126 * 10 9 7 27 27 H 0.97000 * 120.00553 * 359.97438 * 1 2 3 28 28 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 29 29 H 1.08994 * 109.47567 * 299.99923 * 12 10 9 30 30 H 1.08991 * 109.47054 * 60.00626 * 12 10 9 31 31 H 1.08999 * 109.46647 * 180.02562 * 13 12 10 32 32 H 1.08999 * 109.47000 * 300.00691 * 13 12 10 33 33 H 1.09002 * 109.47185 * 59.99918 * 14 13 12 34 34 H 1.08998 * 109.47319 * 179.97438 * 14 13 12 35 35 H 0.97000 * 119.99698 * 95.00146 * 17 15 14 36 36 H 1.08001 * 123.35580 * 359.97438 * 21 20 18 37 37 H 1.07998 * 124.52092 * 180.02562 * 24 22 21 38 38 H 1.08999 * 109.47405 * 299.99602 * 26 10 9 39 39 H 1.09002 * 109.47452 * 59.99785 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2022 0.0051 10 6 4.1120 -2.4709 0.0107 11 1 3.5671 -3.2076 -0.5795 12 6 4.2522 -2.9725 1.4494 13 6 5.0166 -4.2980 1.4551 14 6 6.4063 -4.0878 0.8506 15 6 6.2661 -3.5861 -0.5880 16 1 7.2562 -3.4368 -1.0188 17 7 5.5333 -4.5760 -1.3812 18 6 6.1905 -5.6100 -1.9427 19 8 7.3928 -5.7216 -1.7905 20 6 5.4571 -6.6007 -2.7358 21 6 6.0090 -7.6886 -3.3522 22 6 5.0895 -8.4533 -4.0313 23 17 5.5319 -9.8906 -4.8987 24 6 3.8282 -8.0085 -3.9735 25 16 3.7255 -6.5841 -3.0400 26 6 5.5017 -2.2601 -0.5935 27 1 -0.4851 0.8400 0.0004 28 1 3.8646 -0.3621 0.0055 29 1 4.7971 -2.2359 2.0396 30 1 3.2622 -3.1227 1.8798 31 1 5.1161 -4.6555 2.4800 32 1 4.4713 -5.0345 0.8649 33 1 6.9517 -3.3512 1.4407 34 1 6.9511 -5.0318 0.8550 35 1 4.5750 -4.4872 -1.5022 36 1 7.0622 -7.9238 -3.3107 37 1 2.9870 -8.4900 -4.4498 38 1 5.4019 -1.9028 -1.6184 39 1 6.0466 -1.5234 -0.0033 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981366283.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:44 Heat of formation + Delta-G solvation = -26.614169 kcal Electronic energy + Delta-G solvation = -23190.208690 eV Core-core repulsion = 19670.281247 eV Total energy + Delta-G solvation = -3519.927443 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.36615 -39.66309 -38.77924 -37.01683 -36.24809 -34.53375 -33.24048 -31.62603 -30.47408 -29.74751 -26.29881 -25.34695 -23.57026 -22.93818 -22.40479 -20.58756 -20.49412 -19.73975 -19.44353 -17.43608 -17.15965 -16.69736 -16.57490 -16.25264 -16.11128 -15.37150 -15.13746 -15.00105 -14.69602 -14.59379 -14.26431 -14.20794 -13.88549 -13.73627 -13.09338 -13.07283 -12.98377 -12.84489 -12.46675 -12.38409 -12.35704 -12.00336 -11.88634 -11.79008 -11.62165 -11.52839 -11.24229 -11.04292 -10.87061 -10.25609 -9.98876 -9.54954 -9.26488 -7.97834 -5.30466 -0.70946 0.16718 0.46730 1.03026 1.41579 1.43934 1.44955 1.51195 2.02691 2.07202 2.52376 3.33596 3.44734 3.63912 3.83621 3.91133 3.92708 4.10688 4.17526 4.27468 4.32966 4.48854 4.53175 4.64842 4.69317 4.76583 4.83878 4.89556 4.91711 5.08654 5.16560 5.21069 5.36481 5.42023 5.50643 5.62589 5.83060 6.26185 6.35123 7.01297 7.13012 7.89515 8.07708 9.23524 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.016920 B = 0.003051 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.487073 B = 9176.203081 C =10194.404967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.065 4.065 3 Si 0.951 3.049 4 H -0.280 1.280 5 H -0.302 1.302 6 H -0.250 1.250 7 C -0.222 4.222 8 H 0.060 0.940 9 N -0.751 5.751 10 C 0.177 3.823 11 H 0.045 0.955 12 C -0.130 4.130 13 C -0.108 4.108 14 C -0.123 4.123 15 C 0.157 3.843 16 H 0.092 0.908 17 N -0.710 5.710 18 C 0.593 3.407 19 O -0.562 6.562 20 C -0.284 4.284 21 C -0.052 4.052 22 C -0.075 4.075 23 Cl -0.044 7.044 24 C -0.220 4.220 25 S 0.291 5.709 26 C -0.128 4.128 27 H 0.256 0.744 28 H 0.365 0.635 29 H 0.059 0.941 30 H 0.038 0.962 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.087 0.913 34 H 0.062 0.938 35 H 0.403 0.597 36 H 0.159 0.841 37 H 0.205 0.795 38 H 0.072 0.928 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.894 -16.589 -6.356 21.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.256 4.256 3 Si 0.779 3.221 4 H -0.207 1.207 5 H -0.230 1.230 6 H -0.175 1.175 7 C -0.353 4.353 8 H 0.078 0.922 9 N -0.394 5.394 10 C 0.070 3.930 11 H 0.063 0.937 12 C -0.170 4.170 13 C -0.146 4.146 14 C -0.161 4.161 15 C 0.053 3.947 16 H 0.110 0.890 17 N -0.361 5.361 18 C 0.380 3.620 19 O -0.443 6.443 20 C -0.404 4.404 21 C -0.086 4.086 22 C -0.115 4.115 23 Cl -0.016 7.016 24 C -0.359 4.359 25 S 0.558 5.442 26 C -0.166 4.166 27 H 0.064 0.936 28 H 0.198 0.802 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.106 0.894 34 H 0.081 0.919 35 H 0.240 0.760 36 H 0.177 0.823 37 H 0.222 0.778 38 H 0.090 0.910 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 12.363 -15.884 -5.899 20.975 hybrid contribution 0.553 0.005 -0.541 0.774 sum 12.915 -15.879 -6.441 21.457 Atomic orbital electron populations 1.69873 1.07115 1.26456 1.60140 1.25449 0.95999 1.01068 1.03122 0.85473 0.78739 0.79993 0.77930 1.20655 1.22974 1.17456 1.19014 0.82575 0.93319 1.40380 0.92173 1.42806 1.02441 1.03918 1.90215 1.20371 0.91114 0.87104 0.94451 0.93736 1.22101 0.99235 0.97068 0.98555 1.21429 0.95449 0.96637 1.01080 1.21880 0.97352 1.02016 0.94847 1.20978 0.95780 0.86547 0.91428 0.88958 1.46070 1.12127 1.25795 1.52116 1.17005 0.86238 0.80544 0.78189 1.90803 1.14872 1.76064 1.62566 1.24492 0.99880 1.03806 1.12269 1.20546 1.01677 0.91838 0.94548 1.19525 0.93490 0.94406 1.04068 1.98374 1.93074 1.35360 1.74790 1.25650 1.01355 1.02768 1.06100 1.83531 1.00226 1.18715 1.41710 1.22078 0.95586 0.96665 1.02293 0.93566 0.80168 0.92234 0.94278 0.91208 0.92560 0.89449 0.91892 0.75983 0.82310 0.77797 0.90974 0.88968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.34 13.97 21.65 0.30 -61.04 16 2 C -0.07 -3.69 5.50 84.86 0.47 -3.22 16 3 Si 0.95 43.83 27.74 68.60 1.90 45.73 16 4 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 5 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 6 H -0.25 -10.27 6.51 99.48 0.65 -9.63 16 7 C -0.22 -11.83 10.41 84.04 0.87 -10.95 16 8 H 0.06 3.51 8.06 -2.91 -0.02 3.49 16 9 N -0.75 -31.86 4.92 -322.93 -1.59 -33.45 16 10 C 0.18 5.78 2.60 44.99 0.12 5.90 16 11 H 0.04 1.49 6.44 -2.39 -0.02 1.48 16 12 C -0.13 -3.93 5.50 30.60 0.17 -3.76 16 13 C -0.11 -2.57 5.77 30.60 0.18 -2.39 16 14 C -0.12 -2.68 5.60 30.59 0.17 -2.51 16 15 C 0.16 3.63 2.78 45.01 0.13 3.75 16 16 H 0.09 2.17 7.57 -2.39 -0.02 2.15 16 17 N -0.71 -16.61 4.23 -446.52 -1.89 -18.50 16 18 C 0.59 15.13 7.75 86.42 0.67 15.80 16 19 O -0.56 -17.52 16.50 -4.38 -0.07 -17.59 16 20 C -0.28 -6.10 6.45 24.08 0.16 -5.95 16 21 C -0.05 -1.06 9.89 21.74 0.21 -0.85 16 22 C -0.08 -1.32 6.25 21.11 0.13 -1.19 16 23 Cl -0.04 -0.73 29.10 -2.72 -0.08 -0.81 16 24 C -0.22 -3.23 10.77 66.82 0.72 -2.51 16 25 S 0.29 4.84 22.15 -56.49 -1.25 3.59 16 26 C -0.13 -3.25 5.08 30.61 0.16 -3.09 16 27 H 0.26 15.29 8.31 -92.71 -0.77 14.51 16 28 H 0.37 14.96 5.66 -92.71 -0.52 14.43 16 29 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.06 1.35 7.60 -2.39 -0.02 1.33 16 33 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.40 9.10 5.98 -92.71 -0.55 8.55 16 36 H 0.16 3.25 8.06 -2.91 -0.02 3.22 16 37 H 0.20 1.93 8.06 -2.91 -0.02 1.90 16 38 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -66.99 346.43 1.43 -65.56 By element: Atomic # 1 Polarization: 27.51 SS G_CDS: -0.05 Total: 27.47 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: 4.15 Total: -10.96 kcal Atomic # 7 Polarization: -109.81 SS G_CDS: -3.18 Total: -112.99 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.07 Total: -17.59 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.90 Total: 45.73 kcal Atomic # 16 Polarization: 4.84 SS G_CDS: -1.25 Total: 3.59 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -0.08 Total: -0.81 kcal Total: -66.99 1.43 -65.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981366283.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.949 kcal (2) G-P(sol) polarization free energy of solvation -66.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds