Wall clock time and date at job start Tue Mar 31 2020 15:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99963 * 2 1 4 4 H 1.48494 * 109.47256 * 270.00473 * 3 2 1 5 5 H 1.48505 * 109.47051 * 30.00182 * 3 2 1 6 6 H 1.48506 * 109.47460 * 150.00035 * 3 2 1 7 7 C 1.38811 * 120.00522 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00467 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99679 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99899 * 179.97438 * 9 7 2 11 11 H 1.08992 * 109.47397 * 325.00020 * 10 9 7 12 12 C 1.53002 * 109.46799 * 84.99919 * 10 9 7 13 13 C 1.52997 * 109.46817 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.47452 * 300.00239 * 13 12 10 15 15 C 1.52999 * 109.47159 * 59.99536 * 14 13 12 16 16 H 1.08996 * 109.46929 * 179.97438 * 15 14 13 17 17 N 1.46506 * 109.46684 * 60.00602 * 15 14 13 18 18 C 1.34773 * 120.00361 * 84.99594 * 17 15 14 19 19 O 1.21712 * 119.99720 * 0.02562 * 18 17 15 20 20 C 1.46566 * 120.00315 * 179.97438 * 18 17 15 21 21 C 1.36675 * 125.45273 * 179.71737 * 20 18 17 22 22 C 1.37529 * 113.28338 * 179.84489 * 21 20 18 23 23 Cl 1.73606 * 122.45671 * 180.22832 * 22 21 20 24 24 C 1.33865 * 115.08242 * 0.45357 * 22 21 20 25 25 S 1.70612 * 110.96193 * 359.75087 * 24 22 21 26 26 C 1.52997 * 109.47317 * 300.00546 * 15 14 13 27 27 H 0.97004 * 120.00344 * 359.97438 * 1 2 3 28 28 H 0.97006 * 119.99534 * 359.97438 * 9 7 2 29 29 H 1.08993 * 109.47662 * 299.99952 * 12 10 9 30 30 H 1.09002 * 109.47075 * 60.00457 * 12 10 9 31 31 H 1.09002 * 109.47153 * 60.00231 * 13 12 10 32 32 H 1.09001 * 109.47289 * 180.02562 * 13 12 10 33 33 H 1.09000 * 109.47360 * 180.02562 * 14 13 12 34 34 H 1.09002 * 109.46935 * 300.00125 * 14 13 12 35 35 H 0.97004 * 119.99411 * 265.00023 * 17 15 14 36 36 H 1.08001 * 123.35757 * 0.02731 * 21 20 18 37 37 H 1.08010 * 124.52208 * 179.77197 * 24 22 21 38 38 H 1.09002 * 109.47153 * 299.99641 * 26 15 14 39 39 H 1.09001 * 109.46832 * 179.97438 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0582 -3.6567 -0.0027 11 1 2.9688 -3.5500 -0.5920 12 6 2.4221 -4.0367 1.4340 13 6 3.1866 -5.3620 1.4329 14 6 2.3090 -6.4566 0.8224 15 6 1.9450 -6.0766 -0.6142 16 1 1.3202 -6.8566 -1.0492 17 7 3.1690 -5.9336 -1.4065 18 6 3.7352 -7.0172 -1.9736 19 8 3.2293 -8.1146 -1.8279 20 6 4.9594 -6.8741 -2.7666 21 6 5.6277 -7.8940 -3.3841 22 6 6.7472 -7.4765 -4.0653 23 17 7.7689 -8.5742 -4.9399 24 6 6.9937 -6.1624 -4.0005 25 16 5.8078 -5.3641 -3.0693 26 6 1.1805 -4.7513 -0.6131 27 1 -0.4851 0.8401 0.0004 28 1 0.3556 -2.3880 -0.0016 29 1 3.0469 -3.2568 1.8690 30 1 1.5114 -4.1436 2.0233 31 1 4.0973 -5.2556 0.8434 32 1 3.4455 -5.6330 2.4564 33 1 2.8535 -7.4009 0.8220 34 1 1.3983 -6.5630 1.4119 35 1 3.5720 -5.0589 -1.5228 36 1 5.3069 -8.9245 -3.3438 37 1 7.8315 -5.6726 -4.4747 38 1 0.2698 -4.8577 -0.0236 39 1 0.9216 -4.4803 -1.6367 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981366285.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:50 Heat of formation + Delta-G solvation = -12.005067 kcal Electronic energy + Delta-G solvation = -23148.967543 eV Core-core repulsion = 19629.673598 eV Total energy + Delta-G solvation = -3519.293945 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.26100 -38.65112 -37.73076 -36.26065 -34.54799 -33.17167 -31.22384 -30.61189 -29.25853 -27.90798 -25.44479 -23.78193 -22.43833 -21.85828 -21.05202 -19.73067 -19.16728 -18.69984 -17.22571 -16.56291 -16.08080 -15.49977 -15.39668 -15.01537 -14.47083 -14.14208 -14.00770 -13.61652 -13.55538 -13.50783 -13.13341 -13.07406 -12.52119 -12.13515 -11.91858 -11.80911 -11.70823 -11.63576 -11.16658 -11.04226 -10.92978 -10.83256 -10.43767 -10.24043 -10.23473 -10.14726 -9.80236 -9.57906 -9.34344 -9.04453 -8.91379 -8.80416 -7.02104 -5.82097 -3.11337 0.08497 0.89561 1.23954 1.83059 2.17908 3.02173 3.07772 3.38979 3.44307 3.46216 4.44543 4.52352 4.69039 4.83299 4.98676 5.04056 5.12089 5.27025 5.43858 5.52055 5.54726 5.63854 5.69357 5.70575 5.82006 5.92101 6.00565 6.04544 6.17232 6.24144 6.43401 6.50423 6.55526 6.66293 6.88241 7.02971 7.40182 7.63737 8.05455 8.36082 9.47513 10.04509 10.38969 11.40379 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.014623 B = 0.003128 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.275836 B = 8949.489113 C =10333.336113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.181 3.819 11 H 0.039 0.961 12 C -0.137 4.137 13 C -0.116 4.116 14 C -0.128 4.128 15 C 0.152 3.848 16 H 0.088 0.912 17 N -0.711 5.711 18 C 0.590 3.410 19 O -0.530 6.530 20 C -0.255 4.255 21 C -0.055 4.055 22 C -0.061 4.061 23 Cl -0.049 7.049 24 C -0.235 4.235 25 S 0.265 5.735 26 C -0.135 4.135 27 H 0.255 0.745 28 H 0.384 0.616 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.400 0.600 36 H 0.163 0.837 37 H 0.180 0.820 38 H 0.079 0.921 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.643 -15.170 -6.138 20.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.736 3.264 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.364 5.364 10 C 0.070 3.930 11 H 0.057 0.943 12 C -0.178 4.178 13 C -0.155 4.155 14 C -0.167 4.167 15 C 0.048 3.952 16 H 0.106 0.894 17 N -0.363 5.363 18 C 0.375 3.625 19 O -0.409 6.409 20 C -0.376 4.376 21 C -0.088 4.088 22 C -0.101 4.101 23 Cl -0.021 7.021 24 C -0.374 4.374 25 S 0.532 5.468 26 C -0.174 4.174 27 H 0.065 0.935 28 H 0.218 0.782 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.237 0.763 36 H 0.180 0.820 37 H 0.197 0.803 38 H 0.098 0.902 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 12.222 -14.341 -5.684 19.681 hybrid contribution 0.895 -0.134 -0.608 1.090 sum 13.117 -14.475 -6.292 20.522 Atomic orbital electron populations 1.69654 1.05115 1.25709 1.57484 1.24738 0.95489 0.97683 1.02921 0.86227 0.78689 0.83959 0.77520 1.21711 1.21797 1.20753 1.19206 0.90929 0.84077 1.42929 0.91217 1.42416 1.05796 0.99636 1.88595 1.20141 0.93808 0.86052 0.92970 0.94284 1.22295 0.99874 0.95167 1.00434 1.21518 0.98426 0.95657 0.99854 1.21912 1.00768 0.98680 0.95309 1.21040 0.84603 0.98707 0.90847 0.89388 1.46101 1.28318 1.09702 1.52157 1.16818 0.82198 0.84880 0.78579 1.90828 1.63045 1.25570 1.61419 1.24665 1.03782 0.98201 1.10992 1.20474 0.92366 1.01146 0.94847 1.19531 0.96521 0.90769 1.03303 1.98372 1.66557 1.62616 1.74530 1.25312 1.07082 0.97450 1.07585 1.83516 1.14235 1.06555 1.42452 1.22156 0.99383 0.93414 1.02427 0.93473 0.78200 0.91981 0.92429 0.92737 0.92683 0.91948 0.90869 0.76317 0.81970 0.80273 0.90200 0.91082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.24 13.06 55.49 0.72 -26.52 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 3 Si 0.90 21.59 29.55 -169.99 -5.02 16.57 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 7 C -0.24 -6.30 9.93 -15.06 -0.15 -6.45 16 8 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 9 N -0.72 -16.90 5.12 -53.43 -0.27 -17.17 16 10 C 0.18 3.21 2.60 -67.93 -0.18 3.03 16 11 H 0.04 0.69 6.44 -51.93 -0.33 0.36 16 12 C -0.14 -2.26 5.50 -26.73 -0.15 -2.41 16 13 C -0.12 -1.56 5.77 -26.73 -0.15 -1.71 16 14 C -0.13 -1.64 5.60 -26.73 -0.15 -1.79 16 15 C 0.15 2.03 2.78 -67.93 -0.19 1.84 16 16 H 0.09 1.20 7.57 -51.93 -0.39 0.81 16 17 N -0.71 -9.13 4.23 -55.15 -0.23 -9.36 16 18 C 0.59 7.99 7.75 -12.90 -0.10 7.89 16 19 O -0.53 -8.65 16.50 5.18 0.09 -8.56 16 20 C -0.26 -2.91 6.45 -36.79 -0.24 -3.15 16 21 C -0.06 -0.59 9.89 -40.40 -0.40 -0.99 16 22 C -0.06 -0.58 6.25 -41.38 -0.26 -0.84 16 23 Cl -0.05 -0.44 29.10 -51.86 -1.51 -1.95 16 24 C -0.24 -1.97 10.77 29.20 0.31 -1.65 16 25 S 0.27 2.39 22.15 -107.50 -2.38 0.01 16 26 C -0.14 -2.03 5.07 -26.73 -0.14 -2.16 16 27 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.38 9.66 7.80 -40.82 -0.32 9.34 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.05 0.72 7.60 -51.93 -0.39 0.32 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.40 4.90 5.98 -40.82 -0.24 4.66 16 36 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 37 H 0.18 1.10 8.06 -52.48 -0.42 0.67 16 38 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 349.55 15.07 5.27 5.27 Total: -1.00 -30.00 349.55 -10.26 -40.26 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -5.04 Total: 10.27 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -1.88 Total: -8.82 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: 0.22 Total: -53.05 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: 0.09 Total: -8.56 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 2.39 SS G_CDS: -2.38 Total: 0.01 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.51 Total: -1.95 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.00 -10.26 -40.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981366285.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.254 kcal (2) G-P(sol) polarization free energy of solvation -30.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds