Wall clock time and date at job start Tue Mar 31 2020 15:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99963 * 2 1 4 4 H 1.48494 * 109.47256 * 270.00473 * 3 2 1 5 5 H 1.48505 * 109.47051 * 30.00182 * 3 2 1 6 6 H 1.48506 * 109.47460 * 150.00035 * 3 2 1 7 7 C 1.38811 * 120.00522 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00467 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99679 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99899 * 179.97438 * 9 7 2 11 11 H 1.08992 * 109.47397 * 325.00020 * 10 9 7 12 12 C 1.53002 * 109.46799 * 84.99919 * 10 9 7 13 13 C 1.52997 * 109.46817 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.47452 * 300.00239 * 13 12 10 15 15 C 1.52999 * 109.47159 * 59.99536 * 14 13 12 16 16 H 1.08996 * 109.46929 * 179.97438 * 15 14 13 17 17 N 1.46506 * 109.46684 * 60.00602 * 15 14 13 18 18 C 1.34773 * 120.00361 * 84.99594 * 17 15 14 19 19 O 1.21712 * 119.99720 * 0.02562 * 18 17 15 20 20 C 1.46566 * 120.00315 * 179.97438 * 18 17 15 21 21 C 1.36675 * 125.45273 * 179.71737 * 20 18 17 22 22 C 1.37529 * 113.28338 * 179.84489 * 21 20 18 23 23 Cl 1.73606 * 122.45671 * 180.22832 * 22 21 20 24 24 C 1.33865 * 115.08242 * 0.45357 * 22 21 20 25 25 S 1.70612 * 110.96193 * 359.75087 * 24 22 21 26 26 C 1.52997 * 109.47317 * 300.00546 * 15 14 13 27 27 H 0.97004 * 120.00344 * 359.97438 * 1 2 3 28 28 H 0.97006 * 119.99534 * 359.97438 * 9 7 2 29 29 H 1.08993 * 109.47662 * 299.99952 * 12 10 9 30 30 H 1.09002 * 109.47075 * 60.00457 * 12 10 9 31 31 H 1.09002 * 109.47153 * 60.00231 * 13 12 10 32 32 H 1.09001 * 109.47289 * 180.02562 * 13 12 10 33 33 H 1.09000 * 109.47360 * 180.02562 * 14 13 12 34 34 H 1.09002 * 109.46935 * 300.00125 * 14 13 12 35 35 H 0.97004 * 119.99411 * 265.00023 * 17 15 14 36 36 H 1.08001 * 123.35757 * 0.02731 * 21 20 18 37 37 H 1.08010 * 124.52208 * 179.77197 * 24 22 21 38 38 H 1.09002 * 109.47153 * 299.99641 * 26 15 14 39 39 H 1.09001 * 109.46832 * 179.97438 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0582 -3.6567 -0.0027 11 1 2.9688 -3.5500 -0.5920 12 6 2.4221 -4.0367 1.4340 13 6 3.1866 -5.3620 1.4329 14 6 2.3090 -6.4566 0.8224 15 6 1.9450 -6.0766 -0.6142 16 1 1.3202 -6.8566 -1.0492 17 7 3.1690 -5.9336 -1.4065 18 6 3.7352 -7.0172 -1.9736 19 8 3.2293 -8.1146 -1.8279 20 6 4.9594 -6.8741 -2.7666 21 6 5.6277 -7.8940 -3.3841 22 6 6.7472 -7.4765 -4.0653 23 17 7.7689 -8.5742 -4.9399 24 6 6.9937 -6.1624 -4.0005 25 16 5.8078 -5.3641 -3.0693 26 6 1.1805 -4.7513 -0.6131 27 1 -0.4851 0.8401 0.0004 28 1 0.3556 -2.3880 -0.0016 29 1 3.0469 -3.2568 1.8690 30 1 1.5114 -4.1436 2.0233 31 1 4.0973 -5.2556 0.8434 32 1 3.4455 -5.6330 2.4564 33 1 2.8535 -7.4009 0.8220 34 1 1.3983 -6.5630 1.4119 35 1 3.5720 -5.0589 -1.5228 36 1 5.3069 -8.9245 -3.3438 37 1 7.8315 -5.6726 -4.4747 38 1 0.2698 -4.8577 -0.0236 39 1 0.9216 -4.4803 -1.6367 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981366285.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:49 Heat of formation + Delta-G solvation = -29.425004 kcal Electronic energy + Delta-G solvation = -23149.722928 eV Core-core repulsion = 19629.673598 eV Total energy + Delta-G solvation = -3520.049330 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.35595 -39.63224 -38.75576 -37.00863 -36.13652 -34.52828 -32.93186 -31.61939 -30.33247 -29.44223 -26.29888 -25.63696 -23.54648 -22.95503 -22.40739 -20.59327 -20.30790 -19.70645 -19.07343 -17.41008 -17.19655 -16.71085 -16.47251 -16.31087 -16.00022 -15.32406 -15.13109 -14.93527 -14.85996 -14.58544 -14.25189 -13.90931 -13.86098 -13.52995 -13.08374 -13.04097 -12.85141 -12.79314 -12.46013 -12.38107 -12.21027 -12.04633 -11.93441 -11.88705 -11.59855 -11.46206 -11.24031 -11.00356 -10.82360 -10.25091 -9.98432 -9.54046 -8.95938 -7.89839 -5.17610 -0.70713 0.17240 0.46662 1.03415 1.45344 1.50907 1.51490 1.59591 2.03035 2.06991 2.59475 3.43901 3.56920 3.71814 3.87317 3.92374 3.93618 4.10907 4.30021 4.30803 4.35953 4.49657 4.56525 4.66842 4.72334 4.78240 4.84684 4.90304 4.94097 5.10529 5.18663 5.23782 5.37343 5.43107 5.52823 5.57429 5.66756 6.32018 6.36434 7.01871 7.38835 8.15258 8.37443 9.33677 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.014623 B = 0.003128 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.275836 B = 8949.489113 C =10333.336113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.966 3.034 4 H -0.288 1.288 5 H -0.301 1.301 6 H -0.268 1.268 7 C -0.232 4.232 8 H 0.078 0.922 9 N -0.737 5.737 10 C 0.176 3.824 11 H 0.045 0.955 12 C -0.128 4.128 13 C -0.106 4.106 14 C -0.123 4.123 15 C 0.159 3.841 16 H 0.088 0.912 17 N -0.708 5.708 18 C 0.592 3.408 19 O -0.564 6.564 20 C -0.284 4.284 21 C -0.053 4.053 22 C -0.076 4.076 23 Cl -0.045 7.045 24 C -0.219 4.219 25 S 0.295 5.705 26 C -0.123 4.123 27 H 0.249 0.751 28 H 0.372 0.628 29 H 0.043 0.957 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.404 0.596 36 H 0.158 0.842 37 H 0.206 0.794 38 H 0.081 0.919 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.726 -15.499 -6.466 22.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.269 4.269 3 Si 0.796 3.204 4 H -0.215 1.215 5 H -0.229 1.229 6 H -0.193 1.193 7 C -0.364 4.364 8 H 0.096 0.904 9 N -0.376 5.376 10 C 0.068 3.932 11 H 0.063 0.937 12 C -0.168 4.168 13 C -0.145 4.145 14 C -0.161 4.161 15 C 0.054 3.946 16 H 0.106 0.894 17 N -0.359 5.359 18 C 0.379 3.621 19 O -0.445 6.445 20 C -0.405 4.405 21 C -0.086 4.086 22 C -0.115 4.115 23 Cl -0.016 7.016 24 C -0.358 4.358 25 S 0.563 5.437 26 C -0.162 4.162 27 H 0.057 0.943 28 H 0.204 0.796 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.241 0.759 36 H 0.176 0.824 37 H 0.223 0.777 38 H 0.100 0.900 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 14.357 -14.696 -6.010 21.407 hybrid contribution 0.321 -0.093 -0.543 0.637 sum 14.678 -14.790 -6.553 21.843 Atomic orbital electron populations 1.69808 1.06593 1.25809 1.59947 1.25492 0.96250 1.00900 1.04239 0.85239 0.77806 0.79982 0.77357 1.21488 1.22851 1.19312 1.19604 0.91457 0.85077 1.40254 0.90366 1.42633 1.05456 1.00899 1.88591 1.20372 0.93964 0.84716 0.94136 0.93731 1.22117 0.99584 0.96362 0.98775 1.21429 0.98154 0.93839 1.01028 1.21872 1.01116 0.98354 0.94764 1.20931 0.84743 0.97398 0.91507 0.89388 1.46042 1.28055 1.09831 1.51998 1.17038 0.82528 0.84301 0.78204 1.90804 1.64239 1.26679 1.62741 1.24471 1.03881 0.99890 1.12252 1.20547 0.92590 1.00991 0.94520 1.19515 0.96630 0.91390 1.04006 1.98374 1.66272 1.62591 1.74396 1.25661 1.07050 0.97007 1.06086 1.83422 1.13550 1.04895 1.41879 1.22000 0.99182 0.93299 1.01718 0.94260 0.79614 0.93864 0.93182 0.92167 0.91202 0.91762 0.89923 0.75926 0.82430 0.77682 0.89996 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.73 13.06 21.65 0.28 -57.45 16 2 C -0.08 -4.23 5.50 84.86 0.47 -3.76 16 3 Si 0.97 44.40 29.55 68.60 2.03 46.42 16 4 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 5 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.23 -12.06 9.93 84.03 0.83 -11.23 16 8 H 0.08 3.86 7.83 -2.92 -0.02 3.83 16 9 N -0.74 -34.37 5.12 -322.95 -1.65 -36.03 16 10 C 0.18 6.13 2.60 44.99 0.12 6.24 16 11 H 0.04 1.51 6.44 -2.39 -0.02 1.49 16 12 C -0.13 -4.08 5.50 30.59 0.17 -3.91 16 13 C -0.11 -2.63 5.77 30.60 0.18 -2.45 16 14 C -0.12 -2.91 5.60 30.60 0.17 -2.74 16 15 C 0.16 4.03 2.78 44.99 0.13 4.16 16 16 H 0.09 2.31 7.57 -2.39 -0.02 2.29 16 17 N -0.71 -17.28 4.23 -446.60 -1.89 -19.17 16 18 C 0.59 15.53 7.75 86.42 0.67 16.20 16 19 O -0.56 -18.16 16.50 -4.39 -0.07 -18.24 16 20 C -0.28 -6.12 6.45 24.08 0.16 -5.97 16 21 C -0.05 -1.07 9.89 21.74 0.21 -0.86 16 22 C -0.08 -1.31 6.25 21.11 0.13 -1.17 16 23 Cl -0.04 -0.72 29.10 -2.72 -0.08 -0.80 16 24 C -0.22 -3.06 10.77 66.82 0.72 -2.34 16 25 S 0.30 4.66 22.15 -56.49 -1.25 3.41 16 26 C -0.12 -3.60 5.07 30.59 0.16 -3.45 16 27 H 0.25 14.48 8.31 -92.70 -0.77 13.71 16 28 H 0.37 18.99 7.80 -92.70 -0.72 18.27 16 29 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.06 1.43 7.60 -2.39 -0.02 1.42 16 32 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.40 9.26 5.98 -92.71 -0.55 8.71 16 36 H 0.16 3.27 8.06 -2.91 -0.02 3.24 16 37 H 0.21 1.74 8.06 -2.91 -0.02 1.71 16 38 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -64.03 349.55 1.29 -62.74 By element: Atomic # 1 Polarization: 30.57 SS G_CDS: -0.18 Total: 30.39 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: 4.11 Total: -11.28 kcal Atomic # 7 Polarization: -109.38 SS G_CDS: -3.26 Total: -112.64 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.07 Total: -18.24 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Atomic # 16 Polarization: 4.66 SS G_CDS: -1.25 Total: 3.41 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -0.08 Total: -0.80 kcal Total: -64.03 1.29 -62.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981366285.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.318 kcal (2) G-P(sol) polarization free energy of solvation -64.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds