Wall clock time and date at job start Tue Mar 31 2020 15:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86791 * 120.00326 * 2 1 4 4 H 1.48499 * 109.47237 * 270.00049 * 3 2 1 5 5 H 1.48504 * 109.47179 * 30.00334 * 3 2 1 6 6 H 1.48500 * 109.47244 * 150.00137 * 3 2 1 7 7 C 1.38817 * 119.99582 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99865 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99853 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99818 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.47112 * 324.99807 * 10 9 7 12 12 C 1.53001 * 109.46994 * 84.99736 * 10 9 7 13 13 C 1.53001 * 109.46963 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47082 * 299.99840 * 13 12 10 15 15 C 1.52999 * 109.46801 * 60.00005 * 14 13 12 16 16 H 1.09000 * 109.47510 * 60.00071 * 15 14 13 17 17 N 1.46501 * 109.46761 * 180.02562 * 15 14 13 18 18 C 1.34780 * 119.99965 * 274.99737 * 17 15 14 19 19 O 1.21700 * 119.99776 * 0.02562 * 18 17 15 20 20 C 1.46573 * 120.00089 * 180.02562 * 18 17 15 21 21 C 1.36672 * 125.45273 * 180.02562 * 20 18 17 22 22 C 1.37534 * 113.28759 * 180.02562 * 21 20 18 23 23 Cl 1.73595 * 122.45872 * 179.97438 * 22 21 20 24 24 C 1.33879 * 115.07597 * 0.02562 * 22 21 20 25 25 S 1.70612 * 110.96211 * 359.97438 * 24 22 21 26 26 C 1.52997 * 109.47076 * 204.99611 * 10 9 7 27 27 H 0.96998 * 119.99603 * 359.97438 * 1 2 3 28 28 H 0.96996 * 120.00407 * 359.97438 * 9 7 2 29 29 H 1.09002 * 109.46979 * 299.99590 * 12 10 9 30 30 H 1.08995 * 109.47132 * 60.00084 * 12 10 9 31 31 H 1.08995 * 109.47337 * 59.99953 * 13 12 10 32 32 H 1.08997 * 109.47156 * 180.02562 * 13 12 10 33 33 H 1.08997 * 109.46641 * 300.00427 * 14 13 12 34 34 H 1.08996 * 109.47453 * 180.02562 * 14 13 12 35 35 H 0.97004 * 120.00340 * 95.00376 * 17 15 14 36 36 H 1.08002 * 123.35689 * 0.05515 * 21 20 18 37 37 H 1.07999 * 124.51234 * 180.02562 * 24 22 21 38 38 H 1.08997 * 109.46809 * 60.00138 * 26 10 9 39 39 H 1.08995 * 109.47310 * 300.00075 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0016 10 6 2.0578 -3.6569 -0.0016 11 1 2.9689 -3.5505 -0.5903 12 6 2.4206 -4.0363 1.4355 13 6 3.1861 -5.3611 1.4355 14 6 2.3097 -6.4565 0.8245 15 6 1.9470 -6.0769 -0.6126 16 1 2.8581 -5.9701 -1.2012 17 7 1.1074 -7.1255 -1.1973 18 6 1.6773 -8.2074 -1.7640 19 8 2.8894 -8.3135 -1.7894 20 6 0.8373 -9.2562 -2.3495 21 6 1.2950 -10.3957 -2.9495 22 6 0.2872 -11.2085 -3.4133 23 17 0.6005 -12.7157 -4.2155 24 6 -0.9532 -10.7513 -3.2017 25 16 -0.9204 -9.2491 -2.3935 26 6 1.1810 -4.7519 -0.6123 27 1 -0.4849 0.8401 0.0004 28 1 0.3554 -2.3881 -0.0016 29 1 3.0453 -3.2562 1.8706 30 1 1.5095 -4.1428 2.0242 31 1 4.0972 -5.2542 0.8469 32 1 3.4442 -5.6316 2.4593 33 1 1.3986 -6.5632 1.4132 34 1 2.8548 -7.4003 0.8249 35 1 0.1412 -7.0410 -1.1768 36 1 2.3436 -10.6344 -3.0489 37 1 -1.8544 -11.2653 -3.5018 38 1 0.9226 -4.4816 -1.6361 39 1 0.2699 -4.8583 -0.0236 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981366286.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:52 Heat of formation + Delta-G solvation = -14.579225 kcal Electronic energy + Delta-G solvation = -22584.675014 eV Core-core repulsion = 19065.269445 eV Total energy + Delta-G solvation = -3519.405569 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.18939 -38.64323 -37.79790 -36.35770 -34.76176 -33.42253 -31.17551 -30.65110 -29.12801 -27.80376 -25.49269 -23.76295 -22.50900 -21.80984 -20.62904 -20.02910 -19.54484 -18.74327 -17.10841 -16.75032 -16.14915 -15.87195 -15.30691 -14.74491 -14.42338 -14.13428 -13.96618 -13.74886 -13.64505 -13.53745 -13.27260 -13.11728 -12.72579 -12.19334 -12.12644 -11.80377 -11.76164 -11.29080 -11.01796 -10.99677 -10.90060 -10.75741 -10.43259 -10.38680 -10.23952 -10.16148 -9.78509 -9.64955 -9.43632 -9.10689 -8.91960 -8.88374 -6.98308 -5.78716 -3.07329 -0.02428 0.77783 1.11548 1.73579 2.07908 2.93655 2.95413 3.42713 3.48306 3.49475 4.33837 4.56065 4.59170 4.72790 4.93422 5.03560 5.16782 5.27894 5.43291 5.47970 5.57213 5.60802 5.64358 5.69733 5.83671 5.93260 5.98381 6.10718 6.22473 6.28361 6.45386 6.49637 6.57179 6.69662 6.93981 7.09789 7.29808 7.69412 7.97060 8.40045 9.51322 10.08151 10.42929 11.44010 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.025072 B = 0.002254 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.537431 B =12421.439080 C =12950.322449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.071 0.929 9 N -0.724 5.724 10 C 0.184 3.816 11 H 0.049 0.951 12 C -0.137 4.137 13 C -0.114 4.114 14 C -0.125 4.125 15 C 0.150 3.850 16 H 0.092 0.908 17 N -0.717 5.717 18 C 0.589 3.411 19 O -0.524 6.524 20 C -0.253 4.253 21 C -0.054 4.054 22 C -0.060 4.060 23 Cl -0.047 7.047 24 C -0.234 4.234 25 S 0.255 5.745 26 C -0.130 4.130 27 H 0.255 0.745 28 H 0.383 0.617 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.396 0.604 36 H 0.164 0.836 37 H 0.180 0.820 38 H 0.070 0.930 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.116 -24.529 -4.572 25.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.368 4.368 8 H 0.089 0.911 9 N -0.364 5.364 10 C 0.073 3.927 11 H 0.067 0.933 12 C -0.178 4.178 13 C -0.153 4.153 14 C -0.163 4.163 15 C 0.046 3.954 16 H 0.110 0.890 17 N -0.367 5.367 18 C 0.374 3.626 19 O -0.401 6.401 20 C -0.374 4.374 21 C -0.087 4.087 22 C -0.100 4.100 23 Cl -0.018 7.018 24 C -0.373 4.373 25 S 0.522 5.478 26 C -0.169 4.169 27 H 0.065 0.935 28 H 0.217 0.783 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.230 0.770 36 H 0.181 0.819 37 H 0.197 0.803 38 H 0.088 0.912 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.227 -23.547 -4.158 24.129 hybrid contribution 0.582 -0.332 -0.614 0.909 sum -2.645 -23.880 -4.772 24.495 Atomic orbital electron populations 1.69658 1.05100 1.25639 1.57824 1.24739 0.95525 0.97694 1.03065 0.86200 0.78676 0.83863 0.77523 1.21736 1.21817 1.20749 1.19242 0.91024 0.84036 1.42509 0.91129 1.42397 1.05741 0.99690 1.88620 1.20092 0.94100 0.85484 0.92997 0.93275 1.22299 0.99753 0.95259 1.00457 1.21486 0.98516 0.95294 1.00013 1.21895 1.00264 0.98991 0.95183 1.21133 0.94421 0.85741 0.94132 0.89027 1.46054 1.10334 1.21099 1.59184 1.16822 0.87071 0.80823 0.77848 1.90853 1.13201 1.77787 1.58277 1.24662 0.97851 1.02109 1.12761 1.20517 1.01254 0.91289 0.95681 1.19553 0.93121 0.92294 1.05044 1.98379 1.95992 1.29448 1.78011 1.25275 1.01585 1.02822 1.07590 1.83241 1.00095 1.13829 1.50633 1.22121 0.99405 0.93225 1.02179 0.93545 0.78330 0.91820 0.92620 0.92092 0.92407 0.91946 0.92049 0.76975 0.81859 0.80258 0.91170 0.91597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.69 13.06 55.49 0.72 -26.97 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.24 -6.43 9.93 -15.06 -0.15 -6.58 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.72 -17.46 5.12 -53.42 -0.27 -17.74 16 10 C 0.18 3.46 2.77 -67.93 -0.19 3.27 16 11 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 12 C -0.14 -2.34 5.50 -26.73 -0.15 -2.49 16 13 C -0.11 -1.59 5.92 -26.73 -0.16 -1.75 16 14 C -0.12 -1.62 5.49 -26.73 -0.15 -1.77 16 15 C 0.15 2.02 2.46 -67.91 -0.17 1.85 16 16 H 0.09 1.39 7.58 -51.93 -0.39 0.99 16 17 N -0.72 -8.30 5.07 -55.12 -0.28 -8.58 16 18 C 0.59 7.53 7.75 -12.90 -0.10 7.43 16 19 O -0.52 -8.48 16.50 5.19 0.09 -8.39 16 20 C -0.25 -2.58 6.45 -36.79 -0.24 -2.81 16 21 C -0.05 -0.54 9.89 -40.40 -0.40 -0.94 16 22 C -0.06 -0.51 6.25 -41.37 -0.26 -0.77 16 23 Cl -0.05 -0.38 29.10 -51.86 -1.51 -1.89 16 24 C -0.23 -1.62 10.78 29.20 0.31 -1.31 16 25 S 0.26 1.78 22.15 -107.50 -2.38 -0.60 16 26 C -0.13 -1.98 4.86 -26.71 -0.13 -2.11 16 27 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.38 9.78 7.80 -40.82 -0.32 9.46 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.40 3.69 7.71 -40.82 -0.31 3.38 16 36 H 0.16 1.61 8.06 -52.49 -0.42 1.19 16 37 H 0.18 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 353.99 15.07 5.33 5.33 Total: -1.00 -31.10 353.99 -10.41 -41.51 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -5.22 Total: 8.64 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -1.86 Total: -8.47 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: 0.17 Total: -53.29 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.09 Total: -8.39 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Atomic # 16 Polarization: 1.78 SS G_CDS: -2.38 Total: -0.60 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.51 Total: -1.89 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.10 -10.41 -41.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981366286.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.930 kcal (2) G-P(sol) polarization free energy of solvation -31.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds