Wall clock time and date at job start Tue Mar 31 2020 15:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86791 * 120.00326 * 2 1 4 4 H 1.48499 * 109.47237 * 270.00049 * 3 2 1 5 5 H 1.48504 * 109.47179 * 30.00334 * 3 2 1 6 6 H 1.48500 * 109.47244 * 150.00137 * 3 2 1 7 7 C 1.38817 * 119.99582 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99865 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99853 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99818 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.47112 * 324.99807 * 10 9 7 12 12 C 1.53001 * 109.46994 * 84.99736 * 10 9 7 13 13 C 1.53001 * 109.46963 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47082 * 299.99840 * 13 12 10 15 15 C 1.52999 * 109.46801 * 60.00005 * 14 13 12 16 16 H 1.09000 * 109.47510 * 60.00071 * 15 14 13 17 17 N 1.46501 * 109.46761 * 180.02562 * 15 14 13 18 18 C 1.34780 * 119.99965 * 274.99737 * 17 15 14 19 19 O 1.21700 * 119.99776 * 0.02562 * 18 17 15 20 20 C 1.46573 * 120.00089 * 180.02562 * 18 17 15 21 21 C 1.36672 * 125.45273 * 180.02562 * 20 18 17 22 22 C 1.37534 * 113.28759 * 180.02562 * 21 20 18 23 23 Cl 1.73595 * 122.45872 * 179.97438 * 22 21 20 24 24 C 1.33879 * 115.07597 * 0.02562 * 22 21 20 25 25 S 1.70612 * 110.96211 * 359.97438 * 24 22 21 26 26 C 1.52997 * 109.47076 * 204.99611 * 10 9 7 27 27 H 0.96998 * 119.99603 * 359.97438 * 1 2 3 28 28 H 0.96996 * 120.00407 * 359.97438 * 9 7 2 29 29 H 1.09002 * 109.46979 * 299.99590 * 12 10 9 30 30 H 1.08995 * 109.47132 * 60.00084 * 12 10 9 31 31 H 1.08995 * 109.47337 * 59.99953 * 13 12 10 32 32 H 1.08997 * 109.47156 * 180.02562 * 13 12 10 33 33 H 1.08997 * 109.46641 * 300.00427 * 14 13 12 34 34 H 1.08996 * 109.47453 * 180.02562 * 14 13 12 35 35 H 0.97004 * 120.00340 * 95.00376 * 17 15 14 36 36 H 1.08002 * 123.35689 * 0.05515 * 21 20 18 37 37 H 1.07999 * 124.51234 * 180.02562 * 24 22 21 38 38 H 1.08997 * 109.46809 * 60.00138 * 26 10 9 39 39 H 1.08995 * 109.47310 * 300.00075 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0016 10 6 2.0578 -3.6569 -0.0016 11 1 2.9689 -3.5505 -0.5903 12 6 2.4206 -4.0363 1.4355 13 6 3.1861 -5.3611 1.4355 14 6 2.3097 -6.4565 0.8245 15 6 1.9470 -6.0769 -0.6126 16 1 2.8581 -5.9701 -1.2012 17 7 1.1074 -7.1255 -1.1973 18 6 1.6773 -8.2074 -1.7640 19 8 2.8894 -8.3135 -1.7894 20 6 0.8373 -9.2562 -2.3495 21 6 1.2950 -10.3957 -2.9495 22 6 0.2872 -11.2085 -3.4133 23 17 0.6005 -12.7157 -4.2155 24 6 -0.9532 -10.7513 -3.2017 25 16 -0.9204 -9.2491 -2.3935 26 6 1.1810 -4.7519 -0.6123 27 1 -0.4849 0.8401 0.0004 28 1 0.3554 -2.3881 -0.0016 29 1 3.0453 -3.2562 1.8706 30 1 1.5095 -4.1428 2.0242 31 1 4.0972 -5.2542 0.8469 32 1 3.4442 -5.6316 2.4593 33 1 1.3986 -6.5632 1.4132 34 1 2.8548 -7.4003 0.8249 35 1 0.1412 -7.0410 -1.1768 36 1 2.3436 -10.6344 -3.0489 37 1 -1.8544 -11.2653 -3.5018 38 1 0.9226 -4.4816 -1.6361 39 1 0.2699 -4.8583 -0.0236 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981366286.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:52 Heat of formation + Delta-G solvation = -33.736521 kcal Electronic energy + Delta-G solvation = -22585.505736 eV Core-core repulsion = 19065.269445 eV Total energy + Delta-G solvation = -3520.236291 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.22164 -39.59333 -38.81432 -37.01922 -36.25020 -34.90046 -32.94843 -31.56995 -30.26880 -29.31808 -26.27711 -25.66849 -23.56866 -23.05009 -21.80980 -21.13722 -20.45507 -19.74601 -18.99288 -17.64887 -17.13534 -16.84974 -16.34906 -16.27116 -15.79902 -15.35702 -15.12280 -15.09029 -14.83933 -14.61291 -14.28108 -14.19025 -13.85241 -13.58786 -13.39651 -12.89285 -12.82915 -12.46528 -12.40680 -12.26916 -12.16426 -12.04000 -11.96646 -11.90161 -11.65867 -11.58008 -11.39018 -11.06814 -10.86390 -10.27965 -9.99747 -9.51660 -8.98420 -7.92845 -5.20243 -0.71578 0.18079 0.45136 1.02724 1.45201 1.48514 1.49159 1.57427 1.99118 2.01427 2.57628 3.40578 3.56993 3.65356 3.85828 3.91940 4.03661 4.10305 4.25314 4.31297 4.41308 4.51273 4.53127 4.58306 4.66829 4.77288 4.82372 4.89751 5.00902 5.10406 5.17318 5.22957 5.35625 5.38993 5.51752 5.54538 5.66603 6.29958 6.36438 7.02051 7.36627 8.12346 8.36075 9.30480 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.025072 B = 0.002254 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.537431 B =12421.439080 C =12950.322449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.967 3.033 4 H -0.289 1.289 5 H -0.296 1.296 6 H -0.272 1.272 7 C -0.235 4.235 8 H 0.072 0.928 9 N -0.735 5.735 10 C 0.177 3.823 11 H 0.037 0.963 12 C -0.127 4.127 13 C -0.106 4.106 14 C -0.117 4.117 15 C 0.159 3.841 16 H 0.074 0.926 17 N -0.708 5.708 18 C 0.591 3.409 19 O -0.566 6.566 20 C -0.286 4.286 21 C -0.056 4.056 22 C -0.078 4.078 23 Cl -0.047 7.047 24 C -0.220 4.220 25 S 0.317 5.683 26 C -0.116 4.116 27 H 0.250 0.750 28 H 0.374 0.626 29 H 0.041 0.959 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.409 0.591 36 H 0.153 0.847 37 H 0.208 0.792 38 H 0.063 0.937 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.063 -25.919 -4.453 26.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.797 3.203 4 H -0.216 1.216 5 H -0.222 1.222 6 H -0.197 1.197 7 C -0.367 4.367 8 H 0.090 0.910 9 N -0.375 5.375 10 C 0.068 3.932 11 H 0.055 0.945 12 C -0.167 4.167 13 C -0.145 4.145 14 C -0.156 4.156 15 C 0.054 3.946 16 H 0.092 0.908 17 N -0.358 5.358 18 C 0.378 3.622 19 O -0.447 6.447 20 C -0.407 4.407 21 C -0.090 4.090 22 C -0.118 4.118 23 Cl -0.019 7.019 24 C -0.359 4.359 25 S 0.584 5.416 26 C -0.155 4.155 27 H 0.059 0.941 28 H 0.206 0.794 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.246 0.754 36 H 0.171 0.829 37 H 0.225 0.775 38 H 0.082 0.918 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.169 -24.973 -4.035 25.638 hybrid contribution 0.840 0.011 -0.682 1.082 sum -3.329 -24.961 -4.717 25.620 Atomic orbital electron populations 1.69796 1.06388 1.25905 1.59776 1.25481 0.96371 1.00800 1.04093 0.85224 0.77756 0.79980 0.77338 1.21604 1.22243 1.19670 1.19571 0.91297 0.85292 1.40576 0.91008 1.42566 1.05474 1.00756 1.88692 1.20303 0.93852 0.84701 0.94310 0.94518 1.22104 0.99713 0.96382 0.98523 1.21411 0.98071 0.93669 1.01329 1.21829 1.00683 0.98458 0.94616 1.20857 0.93704 0.85443 0.94569 0.90821 1.45853 1.10827 1.20363 1.58779 1.17115 0.86819 0.81134 0.77177 1.90825 1.15131 1.78761 1.59951 1.24428 1.00046 1.01804 1.14447 1.20546 1.01339 0.91542 0.95568 1.19511 0.93382 0.92624 1.06279 1.98377 1.96070 1.29349 1.78056 1.25694 1.01994 1.02592 1.05584 1.83033 0.96517 1.12975 1.49085 1.21905 0.99230 0.92790 1.01584 0.94096 0.79370 0.94009 0.92644 0.92310 0.90504 0.90501 0.91887 0.75444 0.82911 0.77537 0.91841 0.90341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.14 13.06 21.65 0.28 -57.86 16 2 C -0.08 -4.27 5.50 84.86 0.47 -3.80 16 3 Si 0.97 45.89 29.55 68.60 2.03 47.92 16 4 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 5 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 6 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 7 C -0.24 -12.86 9.93 84.03 0.83 -12.03 16 8 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 9 N -0.74 -35.77 5.12 -322.93 -1.65 -37.43 16 10 C 0.18 6.67 2.77 44.99 0.12 6.79 16 11 H 0.04 1.47 8.08 -2.39 -0.02 1.45 16 12 C -0.13 -4.26 5.50 30.60 0.17 -4.09 16 13 C -0.11 -2.79 5.92 30.60 0.18 -2.61 16 14 C -0.12 -2.84 5.49 30.60 0.17 -2.67 16 15 C 0.16 4.14 2.46 45.01 0.11 4.25 16 16 H 0.07 2.23 7.58 -2.39 -0.02 2.21 16 17 N -0.71 -15.45 5.07 -446.52 -2.27 -17.71 16 18 C 0.59 14.72 7.75 86.42 0.67 15.39 16 19 O -0.57 -18.53 16.50 -4.35 -0.07 -18.60 16 20 C -0.29 -5.49 6.45 24.08 0.16 -5.34 16 21 C -0.06 -1.07 9.89 21.74 0.21 -0.85 16 22 C -0.08 -1.20 6.25 21.11 0.13 -1.07 16 23 Cl -0.05 -0.70 29.10 -2.72 -0.08 -0.78 16 24 C -0.22 -2.38 10.78 66.83 0.72 -1.66 16 25 S 0.32 3.52 22.15 -56.49 -1.25 2.26 16 26 C -0.12 -3.44 4.86 30.61 0.15 -3.29 16 27 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 28 H 0.37 19.32 7.80 -92.71 -0.72 18.60 16 29 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.41 6.73 7.71 -92.71 -0.72 6.02 16 36 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 37 H 0.21 1.07 8.06 -2.91 -0.02 1.04 16 38 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -67.67 353.99 0.73 -66.94 By element: Atomic # 1 Polarization: 26.60 SS G_CDS: -0.35 Total: 26.25 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: 4.09 Total: -10.99 kcal Atomic # 7 Polarization: -109.36 SS G_CDS: -3.64 Total: -113.00 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.07 Total: -18.60 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Atomic # 16 Polarization: 3.52 SS G_CDS: -1.25 Total: 2.26 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -0.08 Total: -0.78 kcal Total: -67.67 0.73 -66.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981366286.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.205 kcal (2) G-P(sol) polarization free energy of solvation -67.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds