Wall clock time and date at job start Tue Mar 31 2020 15:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00194 * 2 1 4 4 H 1.48500 * 109.47517 * 270.00723 * 3 2 1 5 5 H 1.48502 * 109.46736 * 30.00497 * 3 2 1 6 6 H 1.48496 * 109.47375 * 150.00192 * 3 2 1 7 7 C 1.38810 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00204 * 359.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 H 1.08999 * 109.47228 * 325.27455 * 10 9 7 12 12 C 1.52999 * 109.47341 * 85.27615 * 10 9 7 13 13 C 1.53001 * 109.46992 * 59.99623 * 12 10 9 14 14 C 1.53001 * 109.46876 * 60.00448 * 13 12 10 15 15 C 1.52996 * 109.47264 * 299.99762 * 14 13 12 16 16 H 1.09005 * 109.47296 * 300.00321 * 15 14 13 17 17 N 1.46502 * 109.47433 * 179.97438 * 15 14 13 18 18 C 1.34779 * 119.99618 * 85.00397 * 17 15 14 19 19 O 1.21658 * 120.00163 * 359.97438 * 18 17 15 20 20 C 1.47042 * 119.99981 * 180.02562 * 18 17 15 21 21 C 1.44517 * 123.48854 * 359.72202 * 20 18 17 22 22 C 1.32702 * 113.09466 * 179.81020 * 21 20 18 23 23 S 1.75493 * 110.62654 * 0.44353 * 22 21 20 24 24 C 1.36220 * 123.49667 * 180.02562 * 20 18 17 25 25 Cl 1.73600 * 124.60197 * 359.96933 * 24 20 18 26 26 C 1.53001 * 109.47193 * 205.27576 * 10 9 7 27 27 H 0.96998 * 120.00381 * 359.97438 * 1 2 3 28 28 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 29 29 H 1.08996 * 109.47098 * 180.02562 * 12 10 9 30 30 H 1.09001 * 109.46823 * 300.00095 * 12 10 9 31 31 H 1.08995 * 109.46927 * 180.02562 * 13 12 10 32 32 H 1.08996 * 109.47314 * 300.00650 * 13 12 10 33 33 H 1.09005 * 109.47453 * 59.99622 * 14 13 12 34 34 H 1.08999 * 109.46935 * 179.97438 * 14 13 12 35 35 H 0.96995 * 119.99994 * 264.99991 * 17 15 14 36 36 H 1.07994 * 123.45206 * 359.97438 * 21 20 18 37 37 H 1.07992 * 124.67776 * 180.18003 * 22 21 20 38 38 H 1.09004 * 109.47138 * 59.99988 * 26 10 9 39 39 H 1.09005 * 109.47453 * 179.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1120 -2.4708 0.0046 11 1 3.5625 -3.2051 0.5936 12 6 4.2636 -2.9787 -1.4307 13 6 5.0350 -1.9480 -2.2575 14 6 6.4199 -1.7347 -1.6431 15 6 6.2684 -1.2269 -0.2079 16 1 5.7234 -0.2829 -0.2120 17 7 7.5945 -1.0232 0.3807 18 6 8.2511 0.1361 0.1772 19 8 7.7429 1.0131 -0.4956 20 6 9.5823 0.3405 0.7674 21 6 10.2536 -0.6468 1.5817 22 6 11.4470 -0.2489 2.0041 23 16 11.7981 1.3713 1.4281 24 6 10.3080 1.4822 0.6082 25 17 9.7861 2.8627 -0.3058 26 6 5.4969 -2.2575 0.6190 27 1 -0.4850 0.8400 0.0004 28 1 3.8646 -0.3621 -0.0007 29 1 4.8082 -3.9228 -1.4264 30 1 3.2770 -3.1307 -1.8684 31 1 5.1426 -2.3096 -3.2801 32 1 4.4901 -1.0041 -2.2617 33 1 6.9650 -2.6787 -1.6389 34 1 6.9697 -1.0008 -2.2324 35 1 7.9998 -1.7225 0.9168 36 1 9.8288 -1.6108 1.8197 37 1 12.1087 -0.8389 2.6208 38 1 5.3890 -1.8957 1.6415 39 1 6.0418 -3.2016 0.6236 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981367882.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:57 Heat of formation + Delta-G solvation = -1.701045 kcal Electronic energy + Delta-G solvation = -23577.458332 eV Core-core repulsion = 20058.611203 eV Total energy + Delta-G solvation = -3518.847129 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -40.19670 -38.47701 -37.19803 -36.64208 -34.59360 -33.05843 -31.16342 -30.07717 -29.41811 -28.49849 -25.21135 -23.35896 -22.24326 -21.96352 -21.30143 -19.76648 -18.90283 -18.42855 -17.68944 -16.99229 -15.91300 -15.25967 -15.12827 -14.54264 -14.34069 -14.26924 -14.00648 -13.91325 -13.68552 -13.44101 -13.26475 -12.71761 -12.44688 -12.21154 -12.14264 -11.84583 -11.58545 -11.53553 -11.18855 -10.99642 -10.86768 -10.73365 -10.30186 -10.22591 -10.14692 -9.89821 -9.56226 -9.50695 -9.21491 -9.04149 -8.87831 -8.76260 -7.22254 -5.73010 -3.07960 0.25128 0.65617 1.32263 1.58855 1.92091 3.22218 3.24593 3.44877 3.49784 3.53862 4.34383 4.64734 4.65165 4.79641 4.99649 5.10549 5.25411 5.39289 5.43195 5.45266 5.57381 5.60920 5.67192 5.71962 5.79035 5.99671 5.99915 6.07994 6.25841 6.34848 6.42195 6.59841 6.70101 6.76240 6.92040 7.00216 7.52051 8.03499 8.24061 8.46257 9.25084 9.98168 10.17344 11.45322 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.016145 B = 0.003540 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.836737 B = 7908.285146 C = 8810.180930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.007 3.993 3 Si 0.877 3.123 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.241 4.241 8 H 0.091 0.909 9 N -0.746 5.746 10 C 0.185 3.815 11 H 0.060 0.940 12 C -0.135 4.135 13 C -0.110 4.110 14 C -0.122 4.122 15 C 0.145 3.855 16 H 0.091 0.909 17 N -0.717 5.717 18 C 0.569 3.431 19 O -0.516 6.516 20 C -0.151 4.151 21 C -0.101 4.101 22 C -0.227 4.227 23 S 0.220 5.780 24 C -0.124 4.124 25 Cl 0.023 6.977 26 C -0.132 4.132 27 H 0.259 0.741 28 H 0.361 0.639 29 H 0.047 0.953 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.395 0.605 36 H 0.156 0.844 37 H 0.177 0.823 38 H 0.069 0.931 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.085 -3.200 3.536 28.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.189 4.189 3 Si 0.707 3.293 4 H -0.209 1.209 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.371 4.371 8 H 0.109 0.891 9 N -0.390 5.390 10 C 0.075 3.925 11 H 0.078 0.922 12 C -0.175 4.175 13 C -0.149 4.149 14 C -0.161 4.161 15 C 0.042 3.958 16 H 0.109 0.891 17 N -0.368 5.368 18 C 0.353 3.647 19 O -0.392 6.392 20 C -0.170 4.170 21 C -0.130 4.130 22 C -0.362 4.362 23 S 0.484 5.516 24 C -0.271 4.271 25 Cl 0.052 6.948 26 C -0.170 4.170 27 H 0.069 0.931 28 H 0.195 0.805 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.230 0.770 36 H 0.174 0.826 37 H 0.194 0.806 38 H 0.087 0.913 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 28.619 -1.518 3.153 28.833 hybrid contribution -0.514 0.058 -0.001 0.517 sum 28.105 -1.461 3.152 28.319 Atomic orbital electron populations 1.69692 1.05076 1.25762 1.57712 1.24622 0.95149 0.97044 1.02068 0.86668 0.79265 0.85234 0.78090 1.20938 1.21765 1.20290 1.19063 0.80620 0.94608 1.42827 0.89145 1.42881 1.03991 1.01964 1.90204 1.20122 0.89342 0.89535 0.93474 0.92178 1.22151 1.00117 0.96729 0.98551 1.21369 0.94480 1.01155 0.97858 1.21872 0.98305 1.00452 0.95430 1.21077 0.81476 1.00579 0.92689 0.89064 1.45991 1.19805 1.17035 1.53950 1.17424 0.83866 0.82658 0.80713 1.90891 1.67507 1.42254 1.38581 1.20414 0.97783 0.94109 1.04678 1.21134 0.94276 0.99864 0.97708 1.25524 1.01964 0.99927 1.08822 1.83220 1.12144 1.12076 1.44177 1.25316 1.01752 0.95313 1.04728 1.98431 1.89504 1.36565 1.70328 1.22132 0.97370 0.97963 0.99570 0.93117 0.80467 0.93460 0.91450 0.92850 0.90949 0.92386 0.92152 0.77049 0.82609 0.80592 0.91258 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.66 13.97 55.49 0.78 -28.88 16 2 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 3 Si 0.88 23.17 27.73 -169.99 -4.71 18.46 16 4 H -0.28 -7.51 7.11 56.52 0.40 -7.11 16 5 H -0.29 -7.76 7.11 56.52 0.40 -7.36 16 6 H -0.28 -7.08 6.52 56.52 0.37 -6.72 16 7 C -0.24 -6.75 10.41 -15.06 -0.16 -6.91 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 9 N -0.75 -17.41 4.08 -53.43 -0.22 -17.63 16 10 C 0.19 3.39 3.10 -67.93 -0.21 3.18 16 11 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 12 C -0.14 -2.26 5.61 -26.73 -0.15 -2.41 16 13 C -0.11 -1.82 5.77 -26.73 -0.15 -1.97 16 14 C -0.12 -1.80 5.49 -26.73 -0.15 -1.94 16 15 C 0.15 2.24 2.28 -67.93 -0.16 2.08 16 16 H 0.09 1.78 5.94 -51.93 -0.31 1.47 16 17 N -0.72 -9.10 5.06 -55.00 -0.28 -9.37 16 18 C 0.57 8.42 7.75 -12.69 -0.10 8.32 16 19 O -0.52 -9.72 14.57 5.23 0.08 -9.65 16 20 C -0.15 -1.77 5.98 -104.58 -0.63 -2.39 16 21 C -0.10 -0.78 9.90 -39.00 -0.39 -1.17 16 22 C -0.23 -1.41 11.11 28.85 0.32 -1.09 16 23 S 0.22 1.65 23.02 -107.50 -2.47 -0.83 16 24 C -0.12 -1.43 6.87 30.01 0.21 -1.22 16 25 Cl 0.02 0.30 27.20 -51.86 -1.41 -1.11 16 26 C -0.13 -1.91 5.07 -26.73 -0.14 -2.05 16 27 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 28 H 0.36 8.62 3.92 -40.82 -0.16 8.46 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 1.42 7.60 -51.93 -0.39 1.03 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.40 3.58 7.14 -40.82 -0.29 3.28 16 36 H 0.16 0.79 7.10 -52.49 -0.37 0.42 16 37 H 0.18 0.55 8.06 -52.49 -0.42 0.13 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 342.44 15.07 5.16 5.16 Total: -1.00 -34.18 342.44 -9.79 -43.97 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -4.92 Total: 7.36 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -1.79 Total: -7.48 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: 0.28 Total: -55.88 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.08 Total: -9.65 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -4.71 Total: 18.46 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -2.47 Total: -0.83 kcal Atomic # 17 Polarization: 0.30 SS G_CDS: -1.41 Total: -1.11 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.18 -9.79 -43.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981367882.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.267 kcal (2) G-P(sol) polarization free energy of solvation -34.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds