Wall clock time and date at job start Tue Mar 31 2020 15:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00194 * 2 1 4 4 H 1.48500 * 109.47517 * 270.00723 * 3 2 1 5 5 H 1.48502 * 109.46736 * 30.00497 * 3 2 1 6 6 H 1.48496 * 109.47375 * 150.00192 * 3 2 1 7 7 C 1.38810 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00204 * 359.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 H 1.08999 * 109.47228 * 325.27455 * 10 9 7 12 12 C 1.52999 * 109.47341 * 85.27615 * 10 9 7 13 13 C 1.53001 * 109.46992 * 59.99623 * 12 10 9 14 14 C 1.53001 * 109.46876 * 60.00448 * 13 12 10 15 15 C 1.52996 * 109.47264 * 299.99762 * 14 13 12 16 16 H 1.09005 * 109.47296 * 300.00321 * 15 14 13 17 17 N 1.46502 * 109.47433 * 179.97438 * 15 14 13 18 18 C 1.34779 * 119.99618 * 85.00397 * 17 15 14 19 19 O 1.21658 * 120.00163 * 359.97438 * 18 17 15 20 20 C 1.47042 * 119.99981 * 180.02562 * 18 17 15 21 21 C 1.44517 * 123.48854 * 359.72202 * 20 18 17 22 22 C 1.32702 * 113.09466 * 179.81020 * 21 20 18 23 23 S 1.75493 * 110.62654 * 0.44353 * 22 21 20 24 24 C 1.36220 * 123.49667 * 180.02562 * 20 18 17 25 25 Cl 1.73600 * 124.60197 * 359.96933 * 24 20 18 26 26 C 1.53001 * 109.47193 * 205.27576 * 10 9 7 27 27 H 0.96998 * 120.00381 * 359.97438 * 1 2 3 28 28 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 29 29 H 1.08996 * 109.47098 * 180.02562 * 12 10 9 30 30 H 1.09001 * 109.46823 * 300.00095 * 12 10 9 31 31 H 1.08995 * 109.46927 * 180.02562 * 13 12 10 32 32 H 1.08996 * 109.47314 * 300.00650 * 13 12 10 33 33 H 1.09005 * 109.47453 * 59.99622 * 14 13 12 34 34 H 1.08999 * 109.46935 * 179.97438 * 14 13 12 35 35 H 0.96995 * 119.99994 * 264.99991 * 17 15 14 36 36 H 1.07994 * 123.45206 * 359.97438 * 21 20 18 37 37 H 1.07992 * 124.67776 * 180.18003 * 22 21 20 38 38 H 1.09004 * 109.47138 * 59.99988 * 26 10 9 39 39 H 1.09005 * 109.47453 * 179.97438 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1120 -2.4708 0.0046 11 1 3.5625 -3.2051 0.5936 12 6 4.2636 -2.9787 -1.4307 13 6 5.0350 -1.9480 -2.2575 14 6 6.4199 -1.7347 -1.6431 15 6 6.2684 -1.2269 -0.2079 16 1 5.7234 -0.2829 -0.2120 17 7 7.5945 -1.0232 0.3807 18 6 8.2511 0.1361 0.1772 19 8 7.7429 1.0131 -0.4956 20 6 9.5823 0.3405 0.7674 21 6 10.2536 -0.6468 1.5817 22 6 11.4470 -0.2489 2.0041 23 16 11.7981 1.3713 1.4281 24 6 10.3080 1.4822 0.6082 25 17 9.7861 2.8627 -0.3058 26 6 5.4969 -2.2575 0.6190 27 1 -0.4850 0.8400 0.0004 28 1 3.8646 -0.3621 -0.0007 29 1 4.8082 -3.9228 -1.4264 30 1 3.2770 -3.1307 -1.8684 31 1 5.1426 -2.3096 -3.2801 32 1 4.4901 -1.0041 -2.2617 33 1 6.9650 -2.6787 -1.6389 34 1 6.9697 -1.0008 -2.2324 35 1 7.9998 -1.7225 0.9168 36 1 9.8288 -1.6108 1.8197 37 1 12.1087 -0.8389 2.6208 38 1 5.3890 -1.8957 1.6415 39 1 6.0418 -3.2016 0.6236 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981367882.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:56 Heat of formation + Delta-G solvation = -24.991058 kcal Electronic energy + Delta-G solvation = -23578.468263 eV Core-core repulsion = 20058.611203 eV Total energy + Delta-G solvation = -3519.857060 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.29735 -39.69910 -38.13618 -37.44435 -36.10778 -34.72541 -33.04710 -31.03638 -30.55351 -29.94273 -26.11833 -25.33835 -23.35429 -23.18874 -22.38762 -20.78395 -20.01861 -19.74481 -19.38520 -17.93034 -17.08936 -16.57114 -16.34468 -16.14925 -15.77687 -15.40330 -15.17397 -14.91789 -14.75820 -14.56331 -14.37999 -14.11326 -14.03795 -13.72897 -13.43607 -13.02661 -12.98298 -12.62904 -12.50339 -12.22612 -12.20857 -12.10923 -12.05098 -11.85642 -11.61720 -11.50325 -11.23552 -10.90805 -10.78023 -10.12661 -9.85087 -9.53368 -9.27716 -8.04359 -5.33129 -0.50431 -0.00397 0.70095 0.93450 1.17802 1.29457 1.33953 1.36911 2.19018 2.24812 2.42562 3.28660 3.60513 3.63852 3.82966 3.91585 3.96582 4.11603 4.21415 4.33128 4.40445 4.53358 4.66327 4.70543 4.76032 4.79360 4.94504 4.98520 5.10246 5.11178 5.15180 5.28191 5.41143 5.43771 5.57462 5.61884 5.81409 6.22173 6.55208 7.08660 7.23271 7.88108 8.03141 9.17857 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.016145 B = 0.003540 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.836737 B = 7908.285146 C = 8810.180930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.056 4.056 3 Si 0.934 3.066 4 H -0.288 1.288 5 H -0.293 1.293 6 H -0.268 1.268 7 C -0.213 4.213 8 H 0.068 0.932 9 N -0.752 5.752 10 C 0.172 3.828 11 H 0.059 0.941 12 C -0.127 4.127 13 C -0.109 4.109 14 C -0.111 4.111 15 C 0.149 3.851 16 H 0.043 0.957 17 N -0.699 5.699 18 C 0.561 3.439 19 O -0.568 6.568 20 C -0.168 4.168 21 C -0.108 4.108 22 C -0.207 4.207 23 S 0.264 5.736 24 C -0.158 4.158 25 Cl -0.010 7.010 26 C -0.118 4.118 27 H 0.256 0.744 28 H 0.359 0.641 29 H 0.091 0.909 30 H 0.038 0.962 31 H 0.070 0.930 32 H 0.029 0.971 33 H 0.095 0.905 34 H 0.044 0.956 35 H 0.417 0.583 36 H 0.187 0.813 37 H 0.217 0.783 38 H 0.066 0.934 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.215 -5.696 5.040 33.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.248 4.248 3 Si 0.764 3.236 4 H -0.215 1.215 5 H -0.220 1.220 6 H -0.193 1.193 7 C -0.344 4.344 8 H 0.086 0.914 9 N -0.396 5.396 10 C 0.064 3.936 11 H 0.077 0.923 12 C -0.167 4.167 13 C -0.148 4.148 14 C -0.149 4.149 15 C 0.044 3.956 16 H 0.061 0.939 17 N -0.351 5.351 18 C 0.348 3.652 19 O -0.448 6.448 20 C -0.188 4.188 21 C -0.135 4.135 22 C -0.342 4.342 23 S 0.529 5.471 24 C -0.304 4.304 25 Cl 0.019 6.981 26 C -0.156 4.156 27 H 0.065 0.935 28 H 0.193 0.807 29 H 0.109 0.891 30 H 0.057 0.943 31 H 0.088 0.912 32 H 0.048 0.952 33 H 0.113 0.887 34 H 0.062 0.938 35 H 0.255 0.745 36 H 0.204 0.796 37 H 0.234 0.766 38 H 0.085 0.915 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 32.834 -4.080 4.689 33.417 hybrid contribution -1.681 0.700 -0.443 1.874 sum 31.153 -3.381 4.246 31.622 Atomic orbital electron populations 1.69823 1.06572 1.26167 1.60762 1.25211 0.95778 0.99973 1.03839 0.85729 0.78339 0.81871 0.77635 1.21544 1.21980 1.19344 1.19107 0.82736 0.93347 1.39216 0.91421 1.43004 1.02435 1.04121 1.90006 1.20488 0.91076 0.87118 0.94934 0.92338 1.22035 0.99299 0.98564 0.96755 1.21335 0.95141 0.99066 0.99231 1.21772 0.97067 1.01691 0.94409 1.20820 0.82455 0.98601 0.93680 0.93897 1.45717 1.18563 1.17253 1.53606 1.17976 0.84908 0.82299 0.80053 1.90867 1.69002 1.43974 1.40997 1.20466 0.96659 0.95606 1.06096 1.21328 0.94597 1.00256 0.97343 1.26044 1.01672 0.99046 1.07476 1.83116 1.08999 1.12861 1.42154 1.25725 1.04089 0.94712 1.05904 1.98411 1.90141 1.38156 1.71375 1.22011 0.95073 0.99975 0.98554 0.93518 0.80741 0.89093 0.94334 0.91151 0.95237 0.88663 0.93753 0.74476 0.79598 0.76612 0.91476 0.86554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.47 13.97 21.65 0.30 -64.17 16 2 C -0.06 -3.45 5.50 84.86 0.47 -2.99 16 3 Si 0.93 49.81 27.73 68.60 1.90 51.71 16 4 H -0.29 -15.47 7.11 99.48 0.71 -14.77 16 5 H -0.29 -15.59 7.11 99.48 0.71 -14.88 16 6 H -0.27 -13.68 6.52 99.48 0.65 -13.03 16 7 C -0.21 -12.19 10.41 84.03 0.87 -11.32 16 8 H 0.07 4.15 8.06 -2.91 -0.02 4.12 16 9 N -0.75 -35.33 4.08 -322.94 -1.32 -36.65 16 10 C 0.17 6.00 3.10 44.99 0.14 6.14 16 11 H 0.06 2.08 8.08 -2.39 -0.02 2.06 16 12 C -0.13 -3.98 5.61 30.59 0.17 -3.80 16 13 C -0.11 -3.49 5.77 30.59 0.18 -3.31 16 14 C -0.11 -3.02 5.49 30.59 0.17 -2.85 16 15 C 0.15 4.33 2.28 44.99 0.10 4.43 16 16 H 0.04 1.70 5.94 -2.38 -0.01 1.68 16 17 N -0.70 -15.98 5.06 -446.14 -2.26 -18.23 16 18 C 0.56 16.14 7.75 86.55 0.67 16.81 16 19 O -0.57 -22.07 14.57 -4.22 -0.06 -22.13 16 20 C -0.17 -3.62 5.98 -19.84 -0.12 -3.74 16 21 C -0.11 -1.21 9.90 22.70 0.22 -0.99 16 22 C -0.21 -1.54 11.11 66.65 0.74 -0.80 16 23 S 0.26 3.19 23.02 -56.49 -1.30 1.89 16 24 C -0.16 -3.46 6.87 67.35 0.46 -3.00 16 25 Cl -0.01 -0.26 27.20 -2.72 -0.07 -0.34 16 26 C -0.12 -3.03 5.07 30.60 0.16 -2.88 16 27 H 0.26 16.15 8.31 -92.71 -0.77 15.38 16 28 H 0.36 17.38 3.92 -92.71 -0.36 17.02 16 29 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.03 1.18 7.60 -2.39 -0.02 1.16 16 33 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 34 H 0.04 1.36 8.14 -2.39 -0.02 1.35 16 35 H 0.42 5.69 7.14 -92.71 -0.66 5.03 16 36 H 0.19 0.83 7.10 -2.91 -0.02 0.81 16 37 H 0.22 -0.10 8.06 -2.91 -0.02 -0.13 16 38 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 39 H 0.12 1.93 8.14 -2.38 -0.02 1.91 16 Total: -1.00 -80.81 342.44 1.44 -79.37 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 0.01 Total: 16.85 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: 4.24 Total: -8.30 kcal Atomic # 7 Polarization: -115.78 SS G_CDS: -3.27 Total: -119.06 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.06 Total: -22.13 kcal Atomic # 14 Polarization: 49.81 SS G_CDS: 1.90 Total: 51.71 kcal Atomic # 16 Polarization: 3.19 SS G_CDS: -1.30 Total: 1.89 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -0.07 Total: -0.34 kcal Total: -80.81 1.44 -79.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981367882.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.375 kcal (2) G-P(sol) polarization free energy of solvation -80.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds