Wall clock time and date at job start Tue Mar 31 2020 15:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00437 * 2 1 4 4 H 1.48493 * 109.47467 * 240.00186 * 3 2 1 5 5 H 1.48501 * 109.46533 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47127 * 119.99726 * 3 2 1 7 7 C 1.38815 * 119.99666 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99884 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00614 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00649 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.47059 * 35.00241 * 10 9 7 12 12 C 1.52997 * 109.46941 * 275.00081 * 10 9 7 13 13 C 1.53006 * 109.47164 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47127 * 59.99836 * 13 12 10 15 15 C 1.53000 * 109.47060 * 300.00449 * 14 13 12 16 16 H 1.09001 * 109.47194 * 299.99650 * 15 14 13 17 17 N 1.46499 * 109.46840 * 180.02562 * 15 14 13 18 18 C 1.34778 * 120.00288 * 84.99811 * 17 15 14 19 19 O 1.21659 * 119.99859 * 359.97438 * 18 17 15 20 20 C 1.47046 * 119.99994 * 180.02562 * 18 17 15 21 21 C 1.44508 * 123.49399 * 359.97438 * 20 18 17 22 22 C 1.32691 * 113.09866 * 179.97438 * 21 20 18 23 23 S 1.75495 * 110.63040 * 0.02562 * 22 21 20 24 24 C 1.36222 * 123.49232 * 179.70615 * 20 18 17 25 25 Cl 1.73606 * 124.60207 * 0.02562 * 24 20 18 26 26 C 1.52996 * 109.47328 * 60.00126 * 15 14 13 27 27 H 0.97000 * 119.99873 * 0.02562 * 1 2 3 28 28 H 0.97011 * 119.99265 * 0.02562 * 9 7 2 29 29 H 1.09001 * 109.47375 * 299.99966 * 12 10 9 30 30 H 1.09000 * 109.47140 * 59.99984 * 12 10 9 31 31 H 1.08998 * 109.46505 * 299.99708 * 13 12 10 32 32 H 1.08996 * 109.46884 * 180.02562 * 13 12 10 33 33 H 1.09002 * 109.47153 * 180.02562 * 14 13 12 34 34 H 1.09001 * 109.46832 * 60.00321 * 14 13 12 35 35 H 0.97001 * 120.00197 * 264.99912 * 17 15 14 36 36 H 1.07999 * 123.44836 * 0.02562 * 21 20 18 37 37 H 1.07994 * 124.68258 * 180.02562 * 22 21 20 38 38 H 1.08992 * 109.47554 * 59.99639 * 26 15 14 39 39 H 1.09004 * 109.47108 * 179.97438 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9687 -3.5507 0.5889 12 6 2.4218 -4.0356 -1.4375 13 6 3.1873 -5.3604 -1.4375 14 6 2.3106 -6.4560 -0.8277 15 6 1.9467 -6.0772 0.6093 16 1 2.8574 -5.9705 1.1987 17 7 1.1078 -7.1265 1.1934 18 6 1.6783 -8.2081 1.7600 19 8 2.8901 -8.3133 1.7861 20 6 0.8362 -9.2617 2.3458 21 6 -0.6081 -9.2145 2.3560 22 6 -1.1594 -10.2727 2.9365 23 16 0.0773 -11.3824 3.5014 24 6 1.3365 -10.3858 2.9303 25 17 3.0272 -10.7517 3.0771 26 6 1.1812 -4.7525 0.6092 27 1 -0.4850 0.8401 -0.0004 28 1 0.3555 -2.3880 -0.0005 29 1 1.5111 -4.1418 -2.0270 30 1 3.0468 -3.2553 -1.8718 31 1 4.0980 -5.2537 -0.8482 32 1 3.4469 -5.6300 -2.4612 33 1 2.8561 -7.3997 -0.8273 34 1 1.3999 -6.5626 -1.4171 35 1 0.1416 -7.0430 1.1723 36 1 -1.1802 -8.4017 1.9337 37 1 -2.2223 -10.4295 3.0461 38 1 0.2706 -4.8591 0.0199 39 1 0.9216 -4.4828 1.6330 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981367884.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:04 Heat of formation + Delta-G solvation = -10.184264 kcal Electronic energy + Delta-G solvation = -22900.874615 eV Core-core repulsion = 19381.659626 eV Total energy + Delta-G solvation = -3519.214989 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -40.18570 -38.30246 -37.18340 -36.66262 -34.66588 -33.29776 -31.12474 -30.08130 -29.34858 -27.80331 -25.20972 -23.70198 -22.22433 -21.85413 -20.82029 -19.94569 -19.20441 -18.72710 -17.26843 -16.81793 -16.01140 -15.29296 -15.15648 -14.43130 -14.33348 -14.25149 -13.96639 -13.75740 -13.60367 -13.44304 -13.24443 -13.12024 -12.65872 -12.12475 -12.04849 -11.86856 -11.53877 -11.22255 -10.98911 -10.91601 -10.85839 -10.71003 -10.33667 -10.27578 -10.16184 -10.03788 -9.69044 -9.56524 -9.22638 -9.05650 -8.88064 -8.80504 -6.95948 -5.76566 -3.05028 0.23904 0.64499 1.31831 1.58791 1.89276 3.20333 3.20899 3.44777 3.49217 3.50041 4.34960 4.58548 4.65946 4.80116 5.01690 5.10582 5.25679 5.36200 5.46416 5.51655 5.61613 5.67473 5.70198 5.76682 5.89312 5.98783 6.04212 6.15962 6.32025 6.34410 6.53599 6.55392 6.64178 6.74236 6.97822 7.13479 7.50034 7.70903 8.19554 8.42339 9.53416 10.10713 10.45516 11.46177 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.022387 B = 0.002460 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.443227 B =11380.203702 C =11897.724369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.184 3.816 11 H 0.048 0.952 12 C -0.137 4.137 13 C -0.114 4.114 14 C -0.123 4.123 15 C 0.150 3.850 16 H 0.089 0.911 17 N -0.715 5.715 18 C 0.572 3.428 19 O -0.522 6.522 20 C -0.151 4.151 21 C -0.101 4.101 22 C -0.226 4.226 23 S 0.220 5.780 24 C -0.125 4.125 25 Cl 0.021 6.979 26 C -0.129 4.129 27 H 0.255 0.745 28 H 0.383 0.617 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.398 0.602 36 H 0.158 0.842 37 H 0.177 0.823 38 H 0.064 0.936 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.750 -25.747 5.218 26.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.365 5.365 10 C 0.073 3.927 11 H 0.066 0.934 12 C -0.177 4.177 13 C -0.153 4.153 14 C -0.162 4.162 15 C 0.046 3.954 16 H 0.107 0.893 17 N -0.366 5.366 18 C 0.356 3.644 19 O -0.399 6.399 20 C -0.170 4.170 21 C -0.130 4.130 22 C -0.361 4.361 23 S 0.483 5.517 24 C -0.271 4.271 25 Cl 0.050 6.950 26 C -0.168 4.168 27 H 0.065 0.935 28 H 0.217 0.783 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.232 0.768 36 H 0.175 0.825 37 H 0.195 0.805 38 H 0.083 0.917 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.647 -27.055 6.015 27.765 hybrid contribution -0.248 2.364 -0.827 2.517 sum -1.896 -24.691 5.188 25.302 Atomic orbital electron populations 1.69647 1.05097 1.25729 1.57832 1.24729 0.95510 0.97654 1.03086 0.86279 0.78532 0.83591 0.77874 1.21276 1.21735 1.21277 1.19205 0.90998 0.84079 1.42546 0.91203 1.42392 1.05730 0.99705 1.88630 1.20091 0.94108 0.85499 0.92978 0.93352 1.22290 0.99704 0.95252 1.00451 1.21485 0.98537 0.95353 0.99947 1.21879 1.00105 0.98873 0.95353 1.21050 0.94481 0.85859 0.93993 0.89291 1.46001 1.10442 1.20961 1.59174 1.17395 0.87335 0.81399 0.78223 1.90856 1.13414 1.77829 1.57788 1.20406 0.93713 0.96707 1.06169 1.21168 0.91573 0.99572 1.00677 1.25537 1.03805 0.99239 1.07516 1.83228 0.91677 1.21216 1.55551 1.25297 0.93771 1.00906 1.07169 1.98421 1.07470 1.93246 1.95909 1.22091 0.99342 0.93349 1.02026 0.93508 0.78347 0.92674 0.91910 0.92163 0.92522 0.92126 0.92085 0.76793 0.82485 0.80543 0.91722 0.91289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.96 13.06 55.49 0.72 -27.23 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16 8 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 9 N -0.72 -17.76 5.12 -53.43 -0.27 -18.04 16 10 C 0.18 3.55 2.77 -67.93 -0.19 3.36 16 11 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 12 C -0.14 -2.40 5.50 -26.73 -0.15 -2.55 16 13 C -0.11 -1.66 5.92 -26.73 -0.16 -1.82 16 14 C -0.12 -1.68 5.49 -26.73 -0.15 -1.83 16 15 C 0.15 2.11 2.45 -67.93 -0.17 1.94 16 16 H 0.09 1.42 7.57 -51.93 -0.39 1.03 16 17 N -0.72 -8.60 5.06 -55.00 -0.28 -8.87 16 18 C 0.57 7.73 7.75 -12.69 -0.10 7.64 16 19 O -0.52 -8.73 14.57 5.23 0.08 -8.65 16 20 C -0.15 -1.66 5.98 -104.58 -0.63 -2.29 16 21 C -0.10 -0.78 9.90 -39.00 -0.39 -1.16 16 22 C -0.23 -1.39 11.11 28.84 0.32 -1.07 16 23 S 0.22 1.55 23.02 -107.50 -2.47 -0.93 16 24 C -0.12 -1.33 6.87 30.01 0.21 -1.12 16 25 Cl 0.02 0.24 27.20 -51.86 -1.41 -1.17 16 26 C -0.13 -2.02 4.86 -26.73 -0.13 -2.15 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.38 9.92 7.80 -40.82 -0.32 9.60 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.40 3.73 7.15 -40.82 -0.29 3.43 16 36 H 0.16 0.86 7.10 -52.49 -0.37 0.49 16 37 H 0.18 0.58 8.06 -52.49 -0.42 0.16 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 349.99 15.07 5.27 5.27 Total: -1.00 -32.14 349.99 -10.30 -42.44 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -5.15 Total: 8.03 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -1.77 Total: -8.20 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: 0.17 Total: -54.14 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.08 Total: -8.65 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -2.47 Total: -0.93 kcal Atomic # 17 Polarization: 0.24 SS G_CDS: -1.41 Total: -1.17 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.14 -10.30 -42.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981367884.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.257 kcal (2) G-P(sol) polarization free energy of solvation -32.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds