Wall clock time and date at job start Tue Mar 31 2020 15:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00437 * 2 1 4 4 H 1.48493 * 109.47467 * 240.00186 * 3 2 1 5 5 H 1.48501 * 109.46533 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47127 * 119.99726 * 3 2 1 7 7 C 1.38815 * 119.99666 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99884 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00614 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00649 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.47059 * 35.00241 * 10 9 7 12 12 C 1.52997 * 109.46941 * 275.00081 * 10 9 7 13 13 C 1.53006 * 109.47164 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47127 * 59.99836 * 13 12 10 15 15 C 1.53000 * 109.47060 * 300.00449 * 14 13 12 16 16 H 1.09001 * 109.47194 * 299.99650 * 15 14 13 17 17 N 1.46499 * 109.46840 * 180.02562 * 15 14 13 18 18 C 1.34778 * 120.00288 * 84.99811 * 17 15 14 19 19 O 1.21659 * 119.99859 * 359.97438 * 18 17 15 20 20 C 1.47046 * 119.99994 * 180.02562 * 18 17 15 21 21 C 1.44508 * 123.49399 * 359.97438 * 20 18 17 22 22 C 1.32691 * 113.09866 * 179.97438 * 21 20 18 23 23 S 1.75495 * 110.63040 * 0.02562 * 22 21 20 24 24 C 1.36222 * 123.49232 * 179.70615 * 20 18 17 25 25 Cl 1.73606 * 124.60207 * 0.02562 * 24 20 18 26 26 C 1.52996 * 109.47328 * 60.00126 * 15 14 13 27 27 H 0.97000 * 119.99873 * 0.02562 * 1 2 3 28 28 H 0.97011 * 119.99265 * 0.02562 * 9 7 2 29 29 H 1.09001 * 109.47375 * 299.99966 * 12 10 9 30 30 H 1.09000 * 109.47140 * 59.99984 * 12 10 9 31 31 H 1.08998 * 109.46505 * 299.99708 * 13 12 10 32 32 H 1.08996 * 109.46884 * 180.02562 * 13 12 10 33 33 H 1.09002 * 109.47153 * 180.02562 * 14 13 12 34 34 H 1.09001 * 109.46832 * 60.00321 * 14 13 12 35 35 H 0.97001 * 120.00197 * 264.99912 * 17 15 14 36 36 H 1.07999 * 123.44836 * 0.02562 * 21 20 18 37 37 H 1.07994 * 124.68258 * 180.02562 * 22 21 20 38 38 H 1.08992 * 109.47554 * 59.99639 * 26 15 14 39 39 H 1.09004 * 109.47108 * 179.97438 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9687 -3.5507 0.5889 12 6 2.4218 -4.0356 -1.4375 13 6 3.1873 -5.3604 -1.4375 14 6 2.3106 -6.4560 -0.8277 15 6 1.9467 -6.0772 0.6093 16 1 2.8574 -5.9705 1.1987 17 7 1.1078 -7.1265 1.1934 18 6 1.6783 -8.2081 1.7600 19 8 2.8901 -8.3133 1.7861 20 6 0.8362 -9.2617 2.3458 21 6 -0.6081 -9.2145 2.3560 22 6 -1.1594 -10.2727 2.9365 23 16 0.0773 -11.3824 3.5014 24 6 1.3365 -10.3858 2.9303 25 17 3.0272 -10.7517 3.0771 26 6 1.1812 -4.7525 0.6092 27 1 -0.4850 0.8401 -0.0004 28 1 0.3555 -2.3880 -0.0005 29 1 1.5111 -4.1418 -2.0270 30 1 3.0468 -3.2553 -1.8718 31 1 4.0980 -5.2537 -0.8482 32 1 3.4469 -5.6300 -2.4612 33 1 2.8561 -7.3997 -0.8273 34 1 1.3999 -6.5626 -1.4171 35 1 0.1416 -7.0430 1.1723 36 1 -1.1802 -8.4017 1.9337 37 1 -2.2223 -10.4295 3.0461 38 1 0.2706 -4.8591 0.0199 39 1 0.9216 -4.4828 1.6330 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981367884.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:03 Heat of formation + Delta-G solvation = -30.528023 kcal Electronic energy + Delta-G solvation = -22901.756786 eV Core-core repulsion = 19381.659626 eV Total energy + Delta-G solvation = -3520.097161 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.22322 -39.49734 -38.09634 -37.41920 -36.22199 -34.78747 -32.92923 -30.99753 -30.39898 -29.41600 -26.10869 -25.63143 -23.26927 -22.98814 -22.05136 -21.09834 -20.31883 -19.50739 -19.06076 -17.88872 -17.13876 -16.61442 -16.19679 -16.07848 -15.50108 -15.24869 -15.08569 -14.95806 -14.89870 -14.56977 -14.36733 -14.15277 -13.99087 -13.52648 -13.39921 -12.90009 -12.78928 -12.60139 -12.28324 -12.18492 -12.10295 -12.04886 -12.01756 -11.95877 -11.63612 -11.45211 -11.36493 -10.86598 -10.77901 -10.11686 -9.83528 -9.51645 -8.98954 -7.93110 -5.20661 -0.48236 0.01459 0.71285 0.93941 1.18938 1.47766 1.49944 1.55901 2.19745 2.26668 2.57652 3.40055 3.62556 3.69203 3.87538 3.98884 4.04493 4.15014 4.31425 4.31935 4.44680 4.54158 4.58609 4.67420 4.72682 4.77616 4.96388 5.03321 5.10799 5.13122 5.18469 5.22739 5.36288 5.47965 5.50990 5.54352 5.66685 6.29780 6.54819 7.21497 7.36144 8.11875 8.35954 9.30068 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.022387 B = 0.002460 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.443227 B =11380.203702 C =11897.724369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.968 3.032 4 H -0.279 1.279 5 H -0.295 1.295 6 H -0.280 1.280 7 C -0.238 4.238 8 H 0.071 0.929 9 N -0.735 5.735 10 C 0.177 3.823 11 H 0.034 0.966 12 C -0.126 4.126 13 C -0.106 4.106 14 C -0.115 4.115 15 C 0.161 3.839 16 H 0.068 0.932 17 N -0.704 5.704 18 C 0.568 3.432 19 O -0.562 6.562 20 C -0.169 4.169 21 C -0.111 4.111 22 C -0.210 4.210 23 S 0.267 5.733 24 C -0.153 4.153 25 Cl -0.003 7.003 26 C -0.114 4.114 27 H 0.251 0.749 28 H 0.374 0.626 29 H 0.055 0.945 30 H 0.040 0.960 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.413 0.587 36 H 0.179 0.821 37 H 0.213 0.787 38 H 0.078 0.922 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.071 -27.282 5.221 28.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.266 4.266 3 Si 0.797 3.203 4 H -0.206 1.206 5 H -0.221 1.221 6 H -0.207 1.207 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.375 5.375 10 C 0.069 3.931 11 H 0.052 0.948 12 C -0.166 4.166 13 C -0.145 4.145 14 C -0.153 4.153 15 C 0.056 3.944 16 H 0.086 0.914 17 N -0.356 5.356 18 C 0.354 3.646 19 O -0.442 6.442 20 C -0.189 4.189 21 C -0.139 4.139 22 C -0.345 4.345 23 S 0.531 5.469 24 C -0.300 4.300 25 Cl 0.026 6.974 26 C -0.153 4.153 27 H 0.060 0.940 28 H 0.206 0.794 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.250 0.750 36 H 0.197 0.803 37 H 0.230 0.770 38 H 0.096 0.904 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.970 -28.634 6.019 29.410 hybrid contribution 0.132 2.728 -0.782 2.841 sum -2.838 -25.906 5.237 26.582 Atomic orbital electron populations 1.69788 1.06393 1.26020 1.59655 1.25477 0.96364 1.00784 1.03974 0.85295 0.77284 0.79637 0.78072 1.20559 1.22084 1.20676 1.19540 0.91277 0.85357 1.40855 0.91114 1.42554 1.05460 1.00739 1.88726 1.20293 0.93815 0.84778 0.94250 0.94775 1.22093 0.99667 0.96298 0.98548 1.21411 0.98061 0.93804 1.01228 1.21799 1.00481 0.98211 0.94857 1.20748 0.93694 0.85670 0.94310 0.91427 1.45798 1.11033 1.20079 1.58643 1.17822 0.87188 0.81876 0.77706 1.90832 1.15235 1.78742 1.59360 1.20430 0.95147 0.96197 1.07159 1.21320 0.89864 1.01054 1.01687 1.26016 1.05264 0.97911 1.05334 1.83108 0.90098 1.19882 1.53767 1.25674 0.93609 1.02262 1.08472 1.98405 1.09542 1.93391 1.96096 1.21868 0.99174 0.92831 1.01395 0.94047 0.79359 0.92635 0.94077 0.92517 0.90618 0.92223 0.90611 0.75010 0.80337 0.77002 0.90364 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.59 13.06 21.65 0.28 -58.31 16 2 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 3 Si 0.97 46.28 29.55 68.60 2.03 48.30 16 4 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 5 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 6 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 7 C -0.24 -13.22 9.93 84.04 0.83 -12.39 16 8 H 0.07 3.83 7.83 -2.91 -0.02 3.80 16 9 N -0.74 -36.44 5.12 -322.94 -1.65 -38.10 16 10 C 0.18 6.88 2.77 44.99 0.12 7.01 16 11 H 0.03 1.42 8.08 -2.39 -0.02 1.40 16 12 C -0.13 -4.36 5.50 30.60 0.17 -4.20 16 13 C -0.11 -2.95 5.92 30.60 0.18 -2.77 16 14 C -0.11 -2.95 5.49 30.59 0.17 -2.78 16 15 C 0.16 4.40 2.45 44.99 0.11 4.51 16 16 H 0.07 2.18 7.57 -2.39 -0.02 2.16 16 17 N -0.70 -16.05 5.06 -446.15 -2.26 -18.30 16 18 C 0.57 15.06 7.75 86.55 0.67 15.73 16 19 O -0.56 -19.08 14.57 -4.22 -0.06 -19.14 16 20 C -0.17 -3.50 5.98 -19.84 -0.12 -3.62 16 21 C -0.11 -1.39 9.90 22.70 0.22 -1.16 16 22 C -0.21 -1.77 11.11 66.65 0.74 -1.03 16 23 S 0.27 3.08 23.02 -56.49 -1.30 1.78 16 24 C -0.15 -3.11 6.87 67.35 0.46 -2.65 16 25 Cl 0.00 -0.08 27.20 -2.72 -0.07 -0.15 16 26 C -0.11 -3.49 4.86 30.59 0.15 -3.34 16 27 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 28 H 0.37 19.62 7.80 -92.70 -0.72 18.90 16 29 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.41 6.84 7.15 -92.71 -0.66 6.18 16 36 H 0.18 1.32 7.10 -2.91 -0.02 1.30 16 37 H 0.21 0.26 8.06 -2.91 -0.02 0.23 16 38 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 Total: -1.00 -70.84 349.99 0.85 -69.98 By element: Atomic # 1 Polarization: 24.67 SS G_CDS: -0.30 Total: 24.38 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: 4.18 Total: -10.44 kcal Atomic # 7 Polarization: -111.08 SS G_CDS: -3.63 Total: -114.71 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.06 Total: -19.14 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.30 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -1.30 Total: 1.78 kcal Atomic # 17 Polarization: -0.08 SS G_CDS: -0.07 Total: -0.15 kcal Total: -70.84 0.85 -69.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981367884.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.456 kcal (2) G-P(sol) polarization free energy of solvation -70.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds