Wall clock time and date at job start Tue Mar 31 2020 15:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 119.99699 * 2 1 4 4 H 1.48509 * 109.47085 * 239.99847 * 3 2 1 5 5 H 1.48501 * 109.47309 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47336 * 120.00228 * 3 2 1 7 7 C 1.38808 * 120.00483 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00527 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99595 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99605 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.47338 * 34.99618 * 10 9 7 12 12 C 1.53003 * 109.46967 * 274.99079 * 10 9 7 13 13 C 1.53003 * 109.46811 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.46860 * 60.01012 * 13 12 10 15 15 C 1.52999 * 109.47188 * 299.99296 * 14 13 12 16 16 H 1.08999 * 109.47091 * 300.00470 * 15 14 13 17 17 N 1.46499 * 109.47341 * 180.02562 * 15 14 13 18 18 C 1.34777 * 119.99665 * 85.27876 * 17 15 14 19 19 O 1.21633 * 120.00238 * 359.72097 * 18 17 15 20 20 C 1.47183 * 119.99573 * 179.72413 * 18 17 15 21 21 C 1.35965 * 123.45879 * 359.70350 * 20 18 17 22 22 S 1.70442 * 110.84644 * 179.85960 * 21 20 18 23 23 C 1.75503 * 92.45727 * 0.34383 * 22 21 20 24 24 Cl 1.73600 * 124.72255 * 179.76823 * 23 22 21 25 25 C 1.32899 * 110.55779 * 359.80571 * 23 22 21 26 26 C 1.53001 * 109.46944 * 60.00112 * 15 14 13 27 27 H 0.96991 * 120.00296 * 359.97438 * 1 2 3 28 28 H 0.96995 * 120.00160 * 359.97438 * 9 7 2 29 29 H 1.08999 * 109.47531 * 300.00421 * 12 10 9 30 30 H 1.09005 * 109.46473 * 60.00406 * 12 10 9 31 31 H 1.09002 * 109.46570 * 179.97438 * 13 12 10 32 32 H 1.08993 * 109.47787 * 300.00199 * 13 12 10 33 33 H 1.09001 * 109.47132 * 179.97438 * 14 13 12 34 34 H 1.08999 * 109.47488 * 59.99523 * 14 13 12 35 35 H 0.97001 * 119.99790 * 264.99588 * 17 15 14 36 36 H 1.08006 * 124.57817 * 0.02562 * 21 20 18 37 37 H 1.07998 * 123.47218 * 179.97438 * 25 23 22 38 38 H 1.08999 * 109.46935 * 60.00262 * 26 15 14 39 39 H 1.09004 * 109.47138 * 180.02562 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1040 1.6965 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0017 11 1 2.9686 -3.5502 0.5917 12 6 2.4231 -4.0362 -1.4349 13 6 3.1888 -5.3609 -1.4337 14 6 2.3117 -6.4563 -0.8240 15 6 1.9468 -6.0769 0.6126 16 1 2.8570 -5.9699 1.2025 17 7 1.1074 -7.1260 1.1965 18 6 1.6778 -8.2046 1.7690 19 8 2.8893 -8.3094 1.7964 20 6 0.8347 -9.2557 2.3611 21 6 -0.5241 -9.2076 2.3749 22 16 -1.1721 -10.5887 3.1350 23 6 0.4206 -11.2520 3.4566 24 17 0.7195 -12.7570 4.2685 25 6 1.3661 -10.4413 2.9927 26 6 1.1812 -4.7522 0.6114 27 1 -0.4850 0.8399 0.0004 28 1 0.3557 -2.3881 0.0005 29 1 1.5128 -4.1428 -2.0250 30 1 3.0483 -3.2560 -1.8692 31 1 3.4483 -5.6315 -2.4572 32 1 4.0991 -5.2539 -0.8438 33 1 2.8570 -7.4001 -0.8235 34 1 1.4014 -6.5633 -1.4139 35 1 0.1413 -7.0424 1.1748 36 1 -1.1133 -8.4042 1.9579 37 1 2.4226 -10.6475 3.0794 38 1 0.2709 -4.8592 0.0214 39 1 0.9216 -4.4816 1.6349 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981367966.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:14 Heat of formation + Delta-G solvation = -14.861969 kcal Electronic energy + Delta-G solvation = -22594.160273 eV Core-core repulsion = 19074.742443 eV Total energy + Delta-G solvation = -3519.417829 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -40.26043 -38.34699 -37.50378 -36.59356 -34.74761 -33.40119 -31.16087 -30.50159 -28.94113 -27.76496 -25.37912 -23.75780 -22.51454 -21.81322 -20.70836 -19.98742 -19.23911 -18.65196 -17.42337 -16.96088 -16.11097 -15.30954 -15.17306 -14.71696 -14.41545 -14.06822 -14.03359 -13.88314 -13.69998 -13.52330 -13.16566 -13.05148 -12.71098 -12.18307 -12.12669 -12.02100 -11.92598 -11.20673 -11.01032 -10.96722 -10.87756 -10.74534 -10.37364 -10.33984 -10.20116 -10.14692 -9.75082 -9.62252 -9.33547 -9.10895 -8.89745 -8.84418 -6.98070 -5.78356 -3.07067 0.21135 0.58344 1.28730 1.48788 1.72409 3.07822 3.15330 3.43466 3.48043 3.48757 4.36358 4.56692 4.65642 4.81610 4.96275 5.06474 5.19752 5.28575 5.36816 5.48313 5.57581 5.65898 5.67922 5.72577 5.85361 5.95013 6.00184 6.12291 6.26866 6.29897 6.49491 6.50981 6.59373 6.70777 6.94799 7.10551 7.41306 7.69150 8.10295 8.40445 9.51561 10.08486 10.43239 11.44307 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.024821 B = 0.002184 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.804862 B =12815.700294 C =13356.740335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.184 3.816 11 H 0.049 0.951 12 C -0.137 4.137 13 C -0.114 4.114 14 C -0.124 4.124 15 C 0.149 3.851 16 H 0.090 0.910 17 N -0.716 5.716 18 C 0.576 3.424 19 O -0.533 6.533 20 C -0.142 4.142 21 C -0.208 4.208 22 S 0.238 5.762 23 C -0.175 4.175 24 Cl -0.011 7.011 25 C -0.067 4.067 26 C -0.129 4.129 27 H 0.255 0.745 28 H 0.383 0.617 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.397 0.603 36 H 0.180 0.820 37 H 0.163 0.837 38 H 0.064 0.936 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.252 -25.257 5.040 25.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.364 5.364 10 C 0.073 3.927 11 H 0.067 0.933 12 C -0.177 4.177 13 C -0.153 4.153 14 C -0.162 4.162 15 C 0.045 3.955 16 H 0.108 0.892 17 N -0.366 5.366 18 C 0.361 3.639 19 O -0.411 6.411 20 C -0.160 4.160 21 C -0.347 4.347 22 S 0.503 5.497 23 C -0.318 4.318 24 Cl 0.018 6.982 25 C -0.098 4.098 26 C -0.168 4.168 27 H 0.065 0.935 28 H 0.216 0.784 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.232 0.768 36 H 0.197 0.803 37 H 0.181 0.819 38 H 0.083 0.917 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.704 -25.788 5.456 26.618 hybrid contribution 1.059 1.407 -0.342 1.794 sum -2.645 -24.381 5.113 25.052 Atomic orbital electron populations 1.69644 1.05097 1.25760 1.57784 1.24736 0.95522 0.97685 1.03052 0.86277 0.78529 0.83558 0.77882 1.21269 1.21734 1.21258 1.19200 0.90999 0.84055 1.42606 0.91183 1.42390 1.05722 0.99696 1.88642 1.20096 0.94108 0.85497 0.92998 0.93311 1.22296 0.99723 0.95264 1.00450 1.21487 0.98532 0.95324 0.99990 1.21882 1.00161 0.98923 0.95278 1.21082 0.94474 0.85836 0.94080 0.89202 1.46011 1.10453 1.21196 1.58915 1.17458 0.87309 0.81249 0.77879 1.90810 1.13826 1.77956 1.58483 1.20116 0.92292 0.97625 1.05970 1.25843 0.98547 1.04673 1.05603 1.83210 1.03709 1.10527 1.52295 1.25109 0.99143 0.96554 1.11000 1.98382 1.95436 1.27460 1.76955 1.21173 1.01139 0.91277 0.96220 1.22101 0.99361 0.93317 1.02059 0.93494 0.78351 0.92660 0.91860 0.92462 0.92114 0.92101 0.92045 0.76839 0.80290 0.81910 0.91700 0.91262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.78 13.06 55.49 0.72 -27.06 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.24 -6.47 9.93 -15.06 -0.15 -6.62 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.72 -17.56 5.12 -53.42 -0.27 -17.83 16 10 C 0.18 3.49 2.77 -67.92 -0.19 3.30 16 11 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 12 C -0.14 -2.36 5.50 -26.73 -0.15 -2.51 16 13 C -0.11 -1.62 5.92 -26.73 -0.16 -1.77 16 14 C -0.12 -1.63 5.50 -26.73 -0.15 -1.78 16 15 C 0.15 2.03 2.46 -67.93 -0.17 1.86 16 16 H 0.09 1.39 7.57 -51.93 -0.39 0.99 16 17 N -0.72 -8.15 5.05 -54.96 -0.28 -8.43 16 18 C 0.58 7.38 7.76 -12.63 -0.10 7.28 16 19 O -0.53 -8.76 16.45 5.25 0.09 -8.67 16 20 C -0.14 -1.44 5.98 -104.63 -0.63 -2.07 16 21 C -0.21 -1.53 10.38 29.92 0.31 -1.22 16 22 S 0.24 1.55 23.02 -107.50 -2.47 -0.92 16 23 C -0.18 -1.49 7.01 28.89 0.20 -1.28 16 24 Cl -0.01 -0.09 29.27 -51.86 -1.52 -1.60 16 25 C -0.07 -0.66 10.04 -38.97 -0.39 -1.06 16 26 C -0.13 -1.97 4.86 -26.73 -0.13 -2.10 16 27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.38 9.82 7.80 -40.82 -0.32 9.50 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.40 3.44 7.10 -40.82 -0.29 3.15 16 36 H 0.18 0.87 7.01 -52.48 -0.37 0.50 16 37 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 353.33 15.07 5.32 5.32 Total: -1.00 -31.50 353.33 -10.36 -41.85 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -5.14 Total: 8.59 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -1.78 Total: -8.46 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: 0.17 Total: -53.32 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.09 Total: -8.67 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -2.47 Total: -0.92 kcal Atomic # 17 Polarization: -0.09 SS G_CDS: -1.52 Total: -1.60 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.50 -10.36 -41.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981367966.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.990 kcal (2) G-P(sol) polarization free energy of solvation -31.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds