Wall clock time and date at job start Tue Mar 31 2020 15:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 120.00505 * 2 1 4 4 H 1.48498 * 109.47266 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47056 * 299.99726 * 3 2 1 6 6 H 1.48502 * 109.47147 * 59.99630 * 3 2 1 7 7 C 1.38815 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00395 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99598 * 0.02562 * 7 2 1 10 10 C 1.46510 * 119.99831 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.46680 * 325.00437 * 10 9 7 12 12 C 1.52996 * 109.46858 * 85.00321 * 10 9 7 13 13 C 1.53002 * 109.46972 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.46817 * 299.99733 * 13 12 10 15 15 C 1.53006 * 109.47127 * 60.00361 * 14 13 12 16 16 H 1.09000 * 109.47050 * 179.97438 * 15 14 13 17 17 N 1.46492 * 109.47363 * 59.99700 * 15 14 13 18 18 C 1.34781 * 119.99920 * 84.99933 * 17 15 14 19 19 O 1.21632 * 120.00141 * 0.02562 * 18 17 15 20 20 C 1.47181 * 119.99770 * 179.97438 * 18 17 15 21 21 C 1.35973 * 123.46143 * 0.02908 * 20 18 17 22 22 S 1.70438 * 110.84929 * 179.97438 * 21 20 18 23 23 C 1.75503 * 92.45608 * 359.97438 * 22 21 20 24 24 Cl 1.73599 * 124.72028 * 179.97438 * 23 22 21 25 25 C 1.32895 * 110.56045 * 359.75542 * 23 22 21 26 26 C 1.52997 * 109.47071 * 205.00139 * 10 9 7 27 27 H 0.97001 * 119.99639 * 0.02562 * 1 2 3 28 28 H 0.96992 * 120.00216 * 0.02562 * 9 7 2 29 29 H 1.08996 * 109.47452 * 59.99781 * 12 10 9 30 30 H 1.09000 * 109.47054 * 299.99941 * 12 10 9 31 31 H 1.09002 * 109.47070 * 179.97438 * 13 12 10 32 32 H 1.08996 * 109.47407 * 59.99513 * 13 12 10 33 33 H 1.09001 * 109.47502 * 300.00518 * 14 13 12 34 34 H 1.09001 * 109.47289 * 180.02562 * 14 13 12 35 35 H 0.96998 * 120.00176 * 265.00572 * 17 15 14 36 36 H 1.08005 * 124.57285 * 359.92559 * 21 20 18 37 37 H 1.07995 * 123.47490 * 180.21717 * 25 23 22 38 38 H 1.09002 * 109.47153 * 60.00215 * 26 10 9 39 39 H 1.08993 * 109.47194 * 300.00503 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 1 2.9686 -3.5506 -0.5889 12 6 2.4216 -4.0357 1.4375 13 6 3.1871 -5.3605 1.4375 14 6 2.3104 -6.4560 0.8277 15 6 1.9466 -6.0772 -0.6094 16 1 1.3223 -6.8579 -1.0440 17 7 3.1706 -5.9339 -1.4014 18 6 3.7376 -7.0176 -1.9677 19 8 3.2328 -8.1145 -1.8215 20 6 4.9670 -6.8735 -2.7639 21 6 5.5896 -5.6829 -2.9730 22 16 6.9806 -5.8867 -3.9366 23 6 6.7283 -7.6186 -4.0676 24 17 7.7601 -8.7045 -4.9448 25 6 5.6400 -7.9836 -3.3978 26 6 1.1806 -4.7522 -0.6091 27 1 -0.4849 0.8401 -0.0004 28 1 0.3555 -2.3880 -0.0002 29 1 1.5109 -4.1419 2.0270 30 1 3.0466 -3.2554 1.8719 31 1 3.4467 -5.6301 2.4613 32 1 4.0978 -5.2539 0.8482 33 1 1.3996 -6.5626 1.4169 34 1 2.8555 -7.3999 0.8280 35 1 3.5731 -5.0591 -1.5183 36 1 5.2483 -4.7358 -2.5818 37 1 5.2925 -9.0043 -3.3369 38 1 0.9215 -4.4823 -1.6329 39 1 0.2699 -4.8583 -0.0198 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981367967.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:18 Heat of formation + Delta-G solvation = -12.636122 kcal Electronic energy + Delta-G solvation = -23156.604808 eV Core-core repulsion = 19637.283498 eV Total energy + Delta-G solvation = -3519.321309 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -40.32365 -38.39419 -37.41906 -36.50114 -34.54236 -33.15078 -31.21891 -30.47664 -29.04594 -27.89403 -25.31965 -23.78949 -22.44391 -21.87703 -21.05713 -19.74140 -18.92675 -18.53423 -17.33239 -17.13430 -15.62517 -15.43396 -15.19037 -14.91142 -14.46750 -14.08967 -13.94751 -13.86647 -13.56488 -13.52119 -13.10082 -12.96978 -12.50826 -12.13483 -11.93491 -11.90702 -11.85203 -11.75097 -11.11037 -11.05275 -10.94614 -10.82565 -10.42612 -10.23216 -10.20597 -9.96243 -9.80200 -9.57565 -9.23965 -9.05122 -8.93077 -8.75359 -7.02899 -5.83373 -3.12530 0.32243 0.68458 1.40109 1.57665 1.81138 3.20334 3.24202 3.37754 3.43049 3.45794 4.50110 4.51589 4.75761 4.92117 5.02418 5.06286 5.13567 5.29920 5.44243 5.46250 5.54060 5.64320 5.71587 5.75313 5.84282 5.93650 6.01836 6.06550 6.20325 6.25290 6.44694 6.52101 6.60631 6.66916 6.88305 7.03078 7.51812 7.62501 8.18800 8.34902 9.46322 10.03660 10.38024 11.39192 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.014224 B = 0.003022 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.044541 B = 9263.212970 C =10697.801559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.181 3.819 11 H 0.039 0.961 12 C -0.137 4.137 13 C -0.115 4.115 14 C -0.128 4.128 15 C 0.152 3.848 16 H 0.086 0.914 17 N -0.710 5.710 18 C 0.577 3.423 19 O -0.540 6.540 20 C -0.144 4.144 21 C -0.205 4.205 22 S 0.241 5.759 23 C -0.177 4.177 24 Cl -0.013 7.013 25 C -0.067 4.067 26 C -0.134 4.134 27 H 0.255 0.745 28 H 0.384 0.616 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.401 0.599 36 H 0.181 0.819 37 H 0.162 0.838 38 H 0.070 0.930 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.321 -15.550 -6.665 21.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.365 5.365 10 C 0.071 3.929 11 H 0.057 0.943 12 C -0.178 4.178 13 C -0.154 4.154 14 C -0.166 4.166 15 C 0.048 3.952 16 H 0.104 0.896 17 N -0.362 5.362 18 C 0.362 3.638 19 O -0.418 6.418 20 C -0.162 4.162 21 C -0.344 4.344 22 S 0.506 5.494 23 C -0.320 4.320 24 Cl 0.016 6.984 25 C -0.098 4.098 26 C -0.173 4.173 27 H 0.065 0.935 28 H 0.218 0.782 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.238 0.762 36 H 0.198 0.802 37 H 0.180 0.820 38 H 0.088 0.912 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 14.250 -15.277 -7.212 22.101 hybrid contribution -0.695 0.434 0.565 0.996 sum 13.554 -14.843 -6.647 21.171 Atomic orbital electron populations 1.69665 1.05112 1.25597 1.57532 1.24744 0.95497 0.97694 1.02941 0.86157 0.78751 0.84253 0.77238 1.20586 1.21862 1.21867 1.19243 0.90920 0.84093 1.42842 0.91219 1.42430 1.05812 0.99668 1.88589 1.20134 0.93788 0.86021 0.92935 0.94320 1.22291 0.99842 0.95182 1.00438 1.21506 0.98431 0.95634 0.99797 1.21903 1.00665 0.98637 0.95413 1.21004 0.84865 0.98517 0.90834 0.89567 1.46055 1.28042 1.10024 1.52035 1.17451 0.82936 0.84607 0.78770 1.90782 1.63722 1.25712 1.61609 1.20093 0.99166 0.92044 1.04939 1.25906 1.01226 1.02853 1.04378 1.83246 1.22335 0.97830 1.46037 1.25112 1.00984 0.96999 1.08894 1.98376 1.65068 1.61262 1.73725 1.21140 0.92607 1.00769 0.95261 1.22149 0.99336 0.93493 1.02321 0.93512 0.78215 0.92469 0.92076 0.92787 0.92716 0.91016 0.91996 0.76196 0.80169 0.82014 0.91164 0.90342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.27 13.06 55.49 0.72 -26.55 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.90 21.62 29.55 -169.99 -5.02 16.59 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.24 -6.29 9.93 -15.06 -0.15 -6.44 16 8 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 9 N -0.72 -16.93 5.12 -53.42 -0.27 -17.20 16 10 C 0.18 3.21 2.60 -67.93 -0.18 3.04 16 11 H 0.04 0.67 6.44 -51.93 -0.33 0.34 16 12 C -0.14 -2.27 5.50 -26.73 -0.15 -2.41 16 13 C -0.12 -1.55 5.77 -26.73 -0.15 -1.71 16 14 C -0.13 -1.66 5.60 -26.73 -0.15 -1.81 16 15 C 0.15 2.04 2.78 -67.91 -0.19 1.85 16 16 H 0.09 1.20 7.57 -51.93 -0.39 0.81 16 17 N -0.71 -8.95 4.20 -54.94 -0.23 -9.18 16 18 C 0.58 7.82 7.76 -12.63 -0.10 7.72 16 19 O -0.54 -8.92 16.46 5.25 0.09 -8.83 16 20 C -0.14 -1.63 5.98 -104.63 -0.63 -2.26 16 21 C -0.20 -1.89 10.38 29.92 0.31 -1.58 16 22 S 0.24 1.94 23.02 -107.50 -2.47 -0.54 16 23 C -0.18 -1.67 7.01 28.89 0.20 -1.47 16 24 Cl -0.01 -0.11 29.27 -51.86 -1.52 -1.63 16 25 C -0.07 -0.71 10.04 -38.97 -0.39 -1.11 16 26 C -0.13 -2.02 5.08 -26.71 -0.14 -2.16 16 27 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 28 H 0.38 9.69 7.80 -40.82 -0.32 9.37 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.72 7.60 -51.93 -0.39 0.32 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.40 4.67 5.36 -40.82 -0.22 4.45 16 36 H 0.18 1.39 7.01 -52.48 -0.37 1.02 16 37 H 0.16 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 348.90 15.07 5.26 5.26 Total: -1.00 -30.28 348.90 -10.21 -40.49 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -4.96 Total: 10.35 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -1.80 Total: -8.76 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: 0.22 Total: -52.93 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.09 Total: -8.83 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: 1.94 SS G_CDS: -2.47 Total: -0.54 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -1.52 Total: -1.63 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.28 -10.21 -40.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981367967.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.850 kcal (2) G-P(sol) polarization free energy of solvation -30.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds