Wall clock time and date at job start Tue Mar 31 2020 15:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 120.00505 * 2 1 4 4 H 1.48498 * 109.47266 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47056 * 299.99726 * 3 2 1 6 6 H 1.48502 * 109.47147 * 59.99630 * 3 2 1 7 7 C 1.38815 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00395 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99598 * 0.02562 * 7 2 1 10 10 C 1.46510 * 119.99831 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.46680 * 325.00437 * 10 9 7 12 12 C 1.52996 * 109.46858 * 85.00321 * 10 9 7 13 13 C 1.53002 * 109.46972 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.46817 * 299.99733 * 13 12 10 15 15 C 1.53006 * 109.47127 * 60.00361 * 14 13 12 16 16 H 1.09000 * 109.47050 * 179.97438 * 15 14 13 17 17 N 1.46492 * 109.47363 * 59.99700 * 15 14 13 18 18 C 1.34781 * 119.99920 * 84.99933 * 17 15 14 19 19 O 1.21632 * 120.00141 * 0.02562 * 18 17 15 20 20 C 1.47181 * 119.99770 * 179.97438 * 18 17 15 21 21 C 1.35973 * 123.46143 * 0.02908 * 20 18 17 22 22 S 1.70438 * 110.84929 * 179.97438 * 21 20 18 23 23 C 1.75503 * 92.45608 * 359.97438 * 22 21 20 24 24 Cl 1.73599 * 124.72028 * 179.97438 * 23 22 21 25 25 C 1.32895 * 110.56045 * 359.75542 * 23 22 21 26 26 C 1.52997 * 109.47071 * 205.00139 * 10 9 7 27 27 H 0.97001 * 119.99639 * 0.02562 * 1 2 3 28 28 H 0.96992 * 120.00216 * 0.02562 * 9 7 2 29 29 H 1.08996 * 109.47452 * 59.99781 * 12 10 9 30 30 H 1.09000 * 109.47054 * 299.99941 * 12 10 9 31 31 H 1.09002 * 109.47070 * 179.97438 * 13 12 10 32 32 H 1.08996 * 109.47407 * 59.99513 * 13 12 10 33 33 H 1.09001 * 109.47502 * 300.00518 * 14 13 12 34 34 H 1.09001 * 109.47289 * 180.02562 * 14 13 12 35 35 H 0.96998 * 120.00176 * 265.00572 * 17 15 14 36 36 H 1.08005 * 124.57285 * 359.92559 * 21 20 18 37 37 H 1.07995 * 123.47490 * 180.21717 * 25 23 22 38 38 H 1.09002 * 109.47153 * 60.00215 * 26 10 9 39 39 H 1.08993 * 109.47194 * 300.00503 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 1 2.9686 -3.5506 -0.5889 12 6 2.4216 -4.0357 1.4375 13 6 3.1871 -5.3605 1.4375 14 6 2.3104 -6.4560 0.8277 15 6 1.9466 -6.0772 -0.6094 16 1 1.3223 -6.8579 -1.0440 17 7 3.1706 -5.9339 -1.4014 18 6 3.7376 -7.0176 -1.9677 19 8 3.2328 -8.1145 -1.8215 20 6 4.9670 -6.8735 -2.7639 21 6 5.5896 -5.6829 -2.9730 22 16 6.9806 -5.8867 -3.9366 23 6 6.7283 -7.6186 -4.0676 24 17 7.7601 -8.7045 -4.9448 25 6 5.6400 -7.9836 -3.3978 26 6 1.1806 -4.7522 -0.6091 27 1 -0.4849 0.8401 -0.0004 28 1 0.3555 -2.3880 -0.0002 29 1 1.5109 -4.1419 2.0270 30 1 3.0466 -3.2554 1.8719 31 1 3.4467 -5.6301 2.4613 32 1 4.0978 -5.2539 0.8482 33 1 1.3996 -6.5626 1.4169 34 1 2.8555 -7.3999 0.8280 35 1 3.5731 -5.0591 -1.5183 36 1 5.2483 -4.7358 -2.5818 37 1 5.2925 -9.0043 -3.3369 38 1 0.9215 -4.4823 -1.6329 39 1 0.2699 -4.8583 -0.0198 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981367967.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:17 Heat of formation + Delta-G solvation = -30.310505 kcal Electronic energy + Delta-G solvation = -23157.371227 eV Core-core repulsion = 19637.283498 eV Total energy + Delta-G solvation = -3520.087728 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.39887 -39.51622 -38.27046 -37.31922 -36.13588 -34.49467 -32.92505 -31.49444 -30.12225 -29.40151 -26.19461 -25.64369 -23.54399 -22.95772 -22.40726 -20.69085 -20.08711 -19.49763 -18.94468 -18.18803 -16.97220 -16.58493 -16.31743 -16.06712 -15.91813 -15.28050 -15.10497 -14.89320 -14.77952 -14.62249 -14.51631 -13.88963 -13.76198 -13.51032 -13.08917 -13.02400 -12.88249 -12.80782 -12.64491 -12.61495 -12.19353 -12.00776 -11.93901 -11.81506 -11.59568 -11.45183 -11.03113 -10.99140 -10.83493 -10.11272 -9.95232 -9.50509 -8.96674 -7.90914 -5.18597 -0.43890 -0.01364 0.66891 0.72379 1.09317 1.49512 1.50335 1.59411 2.20036 2.26455 2.58475 3.43131 3.64202 3.79756 3.87614 3.92506 3.93912 4.15163 4.31285 4.31944 4.37014 4.51781 4.57079 4.67975 4.70492 4.73475 4.82091 4.95821 4.98401 5.11665 5.19742 5.24346 5.38583 5.48657 5.52724 5.57202 5.67585 6.31388 6.50221 7.16560 7.37801 8.14597 8.36451 9.32900 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.014224 B = 0.003022 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.044541 B = 9263.212970 C =10697.801559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.966 3.034 4 H -0.263 1.263 5 H -0.297 1.297 6 H -0.299 1.299 7 C -0.230 4.230 8 H 0.079 0.921 9 N -0.737 5.737 10 C 0.178 3.822 11 H 0.048 0.952 12 C -0.128 4.128 13 C -0.105 4.105 14 C -0.122 4.122 15 C 0.160 3.840 16 H 0.083 0.917 17 N -0.704 5.704 18 C 0.579 3.421 19 O -0.576 6.576 20 C -0.168 4.168 21 C -0.200 4.200 22 S 0.300 5.700 23 C -0.185 4.185 24 Cl -0.007 7.007 25 C -0.080 4.080 26 C -0.122 4.122 27 H 0.248 0.752 28 H 0.372 0.628 29 H 0.047 0.953 30 H 0.042 0.958 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.407 0.593 36 H 0.197 0.803 37 H 0.155 0.845 38 H 0.063 0.937 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.511 -15.688 -7.023 23.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.796 3.204 4 H -0.187 1.187 5 H -0.224 1.224 6 H -0.227 1.227 7 C -0.362 4.362 8 H 0.097 0.903 9 N -0.376 5.376 10 C 0.069 3.931 11 H 0.066 0.934 12 C -0.168 4.168 13 C -0.143 4.143 14 C -0.161 4.161 15 C 0.055 3.945 16 H 0.101 0.899 17 N -0.356 5.356 18 C 0.366 3.634 19 O -0.457 6.457 20 C -0.186 4.186 21 C -0.339 4.339 22 S 0.564 5.436 23 C -0.328 4.328 24 Cl 0.021 6.979 25 C -0.110 4.110 26 C -0.161 4.161 27 H 0.057 0.943 28 H 0.203 0.797 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.245 0.755 36 H 0.214 0.786 37 H 0.172 0.828 38 H 0.082 0.918 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 16.501 -15.443 -7.573 23.836 hybrid contribution -1.293 0.425 0.636 1.502 sum 15.209 -15.018 -6.937 22.471 Atomic orbital electron populations 1.69817 1.06619 1.25730 1.60037 1.25500 0.96255 1.00927 1.04311 0.85169 0.78519 0.80344 0.76336 1.18674 1.22409 1.22704 1.19643 0.91463 0.85051 1.40052 0.90289 1.42657 1.05464 1.00967 1.88559 1.20369 0.94033 0.84592 0.94064 0.93401 1.22116 0.99484 0.96372 0.98850 1.21410 0.98192 0.93764 1.00922 1.21857 1.00947 0.98317 0.94935 1.20864 0.85079 0.97146 0.91436 0.89851 1.45970 1.27655 1.10235 1.51761 1.17733 0.83291 0.84022 0.78386 1.90759 1.64933 1.26976 1.63020 1.19883 0.99154 0.93114 1.06463 1.26176 1.01345 1.02776 1.03577 1.83114 1.20456 0.95865 1.44131 1.25260 1.00759 0.98263 1.08562 1.98379 1.64677 1.61327 1.73478 1.21104 0.93288 1.00571 0.96080 1.21986 0.99081 0.93391 1.01593 0.94272 0.79688 0.93399 0.93893 0.91429 0.91952 0.90252 0.91947 0.75518 0.78615 0.82758 0.91835 0.90350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.79 13.06 21.65 0.28 -57.51 16 2 C -0.08 -4.29 5.50 84.86 0.47 -3.82 16 3 Si 0.97 44.35 29.55 68.60 2.03 46.38 16 4 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 5 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 6 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 7 C -0.23 -11.91 9.93 84.03 0.83 -11.07 16 8 H 0.08 3.87 7.83 -2.91 -0.02 3.85 16 9 N -0.74 -34.28 5.12 -322.93 -1.65 -35.93 16 10 C 0.18 6.10 2.60 44.99 0.12 6.21 16 11 H 0.05 1.57 6.44 -2.39 -0.02 1.55 16 12 C -0.13 -4.07 5.50 30.59 0.17 -3.90 16 13 C -0.10 -2.59 5.77 30.59 0.18 -2.41 16 14 C -0.12 -2.94 5.60 30.60 0.17 -2.77 16 15 C 0.16 4.07 2.78 45.01 0.13 4.19 16 16 H 0.08 2.25 7.57 -2.39 -0.02 2.23 16 17 N -0.70 -16.72 4.20 -445.96 -1.87 -18.60 16 18 C 0.58 15.14 7.76 86.59 0.67 15.81 16 19 O -0.58 -18.88 16.46 -4.13 -0.07 -18.95 16 20 C -0.17 -3.58 5.98 -19.87 -0.12 -3.70 16 21 C -0.20 -3.19 10.38 67.29 0.70 -2.49 16 22 S 0.30 3.98 23.02 -56.49 -1.30 2.68 16 23 C -0.19 -3.19 7.01 66.64 0.47 -2.72 16 24 Cl -0.01 -0.11 29.27 -2.72 -0.08 -0.19 16 25 C -0.08 -1.63 10.04 22.68 0.23 -1.41 16 26 C -0.12 -3.56 5.08 30.61 0.16 -3.40 16 27 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 28 H 0.37 18.98 7.80 -92.71 -0.72 18.26 16 29 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.07 1.53 8.14 -2.39 -0.02 1.52 16 32 H 0.06 1.46 7.60 -2.39 -0.02 1.45 16 33 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.06 1.55 8.14 -2.39 -0.02 1.54 16 35 H 0.41 8.63 5.36 -92.71 -0.50 8.14 16 36 H 0.20 2.41 7.01 -2.91 -0.02 2.39 16 37 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 38 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -64.75 348.90 1.37 -63.38 By element: Atomic # 1 Polarization: 30.35 SS G_CDS: -0.12 Total: 30.22 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: 4.16 Total: -11.47 kcal Atomic # 7 Polarization: -108.80 SS G_CDS: -3.25 Total: -112.04 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.07 Total: -18.95 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 16 Polarization: 3.98 SS G_CDS: -1.30 Total: 2.68 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -0.08 Total: -0.19 kcal Total: -64.75 1.37 -63.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981367967.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.066 kcal (2) G-P(sol) polarization free energy of solvation -64.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds