Wall clock time and date at job start Tue Mar 31 2020 15:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00264 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.09000 * 109.46989 * 324.99520 * 10 9 7 12 12 C 1.52996 * 109.47130 * 84.99932 * 10 9 7 13 13 C 1.52998 * 109.47178 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47164 * 300.00289 * 13 12 10 15 15 C 1.52996 * 109.47309 * 59.99792 * 14 13 12 16 16 H 1.09000 * 109.47521 * 60.00160 * 15 14 13 17 17 N 1.46505 * 109.47136 * 180.02562 * 15 14 13 18 18 C 1.34782 * 119.99954 * 274.99616 * 17 15 14 19 19 O 1.21634 * 119.99899 * 0.02562 * 18 17 15 20 20 C 1.47177 * 119.99974 * 179.97438 * 18 17 15 21 21 C 1.35979 * 123.45900 * 0.03026 * 20 18 17 22 22 S 1.70442 * 110.84727 * 179.97438 * 21 20 18 23 23 C 1.75504 * 92.45396 * 0.02562 * 22 21 20 24 24 Cl 1.73597 * 124.71794 * 179.97438 * 23 22 21 25 25 C 1.32893 * 110.56340 * 359.71358 * 23 22 21 26 26 C 1.53003 * 109.47208 * 299.99860 * 15 14 13 27 27 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 28 28 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 29 29 H 1.08998 * 109.47099 * 300.00036 * 12 10 9 30 30 H 1.09002 * 109.46807 * 60.00065 * 12 10 9 31 31 H 1.09000 * 109.46863 * 59.99636 * 13 12 10 32 32 H 1.08994 * 109.47323 * 180.02562 * 13 12 10 33 33 H 1.08998 * 109.47497 * 180.02562 * 14 13 12 34 34 H 1.09002 * 109.47179 * 300.00028 * 14 13 12 35 35 H 0.96998 * 120.00161 * 95.00536 * 17 15 14 36 36 H 1.08000 * 124.57398 * 359.96316 * 21 20 18 37 37 H 1.07998 * 123.47375 * 180.24082 * 25 23 22 38 38 H 1.08994 * 109.47227 * 300.00088 * 26 15 14 39 39 H 1.09004 * 109.47179 * 179.97438 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 1 2.9686 -3.5475 -0.6024 12 6 2.4219 -4.0431 1.4215 13 6 3.1863 -5.3685 1.4146 14 6 2.3085 -6.4602 0.7994 15 6 1.9446 -6.0739 -0.6355 16 1 2.8552 -5.9650 -1.2246 17 7 1.1037 -7.1191 -1.2244 18 6 1.6723 -8.1988 -1.7966 19 8 2.8836 -8.3057 -1.8237 20 6 0.8274 -9.2491 -2.3876 21 6 -0.5315 -9.2018 -2.3961 22 16 -1.1817 -10.5794 -3.1606 23 6 0.4100 -11.2455 -3.4815 24 17 0.7064 -12.7522 -4.2912 25 6 1.3569 -10.4333 -3.0234 26 6 1.1801 -4.7486 -0.6286 27 1 -0.4850 0.8401 0.0004 28 1 0.3555 -2.3880 -0.0068 29 1 3.0468 -3.2651 1.8599 30 1 1.5111 -4.1524 2.0104 31 1 4.0969 -5.2596 0.8255 32 1 3.4451 -5.6440 2.4369 33 1 2.8529 -7.4046 0.7949 34 1 1.3978 -6.5691 1.3884 35 1 0.1377 -7.0340 -1.2025 36 1 -1.1195 -8.3996 -1.9750 37 1 2.4132 -10.6392 -3.1138 38 1 0.2695 -4.8575 -0.0396 39 1 0.9213 -4.4731 -1.6510 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981367968.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:21 Heat of formation + Delta-G solvation = -14.932490 kcal Electronic energy + Delta-G solvation = -22594.821861 eV Core-core repulsion = 19075.400973 eV Total energy + Delta-G solvation = -3519.420887 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -40.26055 -38.34836 -37.50441 -36.59359 -34.74895 -33.40279 -31.16268 -30.50207 -28.94131 -27.76635 -25.37989 -23.75971 -22.51446 -21.81578 -20.70890 -19.98698 -19.24008 -18.65245 -17.42378 -16.96196 -16.11226 -15.31121 -15.17140 -14.71741 -14.41694 -14.06995 -14.03417 -13.88536 -13.69731 -13.52364 -13.16680 -13.05262 -12.71306 -12.18398 -12.12770 -12.02126 -11.92643 -11.20710 -11.00983 -10.96872 -10.89718 -10.74666 -10.36809 -10.33730 -10.20215 -10.12766 -9.75094 -9.62445 -9.33581 -9.10975 -8.90288 -8.84564 -6.98181 -5.78717 -3.07261 0.21079 0.58323 1.28675 1.48766 1.72388 3.07830 3.15295 3.42698 3.48279 3.49470 4.36363 4.56503 4.65602 4.81540 4.96222 5.06376 5.19742 5.28481 5.36777 5.48244 5.57510 5.65787 5.67907 5.72493 5.85251 5.94911 6.00082 6.12201 6.26821 6.29823 6.49410 6.50887 6.59269 6.70721 6.94742 7.10427 7.41275 7.69464 8.10274 8.40039 9.51326 10.08270 10.43038 11.44019 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.024863 B = 0.002184 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.920387 B =12817.307255 C =13358.433173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.071 0.929 9 N -0.724 5.724 10 C 0.183 3.817 11 H 0.049 0.951 12 C -0.137 4.137 13 C -0.114 4.114 14 C -0.124 4.124 15 C 0.149 3.851 16 H 0.090 0.910 17 N -0.716 5.716 18 C 0.576 3.424 19 O -0.533 6.533 20 C -0.142 4.142 21 C -0.208 4.208 22 S 0.238 5.762 23 C -0.175 4.175 24 Cl -0.011 7.011 25 C -0.067 4.067 26 C -0.129 4.129 27 H 0.255 0.745 28 H 0.383 0.617 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.397 0.603 36 H 0.180 0.820 37 H 0.163 0.837 38 H 0.064 0.936 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.244 -25.266 -5.092 25.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.368 4.368 8 H 0.089 0.911 9 N -0.365 5.365 10 C 0.073 3.927 11 H 0.067 0.933 12 C -0.177 4.177 13 C -0.153 4.153 14 C -0.163 4.163 15 C 0.045 3.955 16 H 0.108 0.892 17 N -0.366 5.366 18 C 0.361 3.639 19 O -0.411 6.411 20 C -0.160 4.160 21 C -0.347 4.347 22 S 0.503 5.497 23 C -0.318 4.318 24 Cl 0.018 6.982 25 C -0.098 4.098 26 C -0.168 4.168 27 H 0.064 0.936 28 H 0.216 0.784 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.232 0.768 36 H 0.197 0.803 37 H 0.181 0.819 38 H 0.083 0.917 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.688 -25.800 -5.503 26.637 hybrid contribution 1.046 1.408 0.330 1.785 sum -2.642 -24.392 -5.173 25.074 Atomic orbital electron populations 1.69657 1.05104 1.25628 1.57866 1.24739 0.95523 0.97690 1.03082 0.86202 0.78685 0.83868 0.77524 1.21738 1.21817 1.20740 1.19245 0.91030 0.84046 1.42464 0.91129 1.42398 1.05729 0.99710 1.88624 1.20098 0.94108 0.85505 0.92995 0.93302 1.22292 0.99734 0.95252 1.00453 1.21485 0.98534 0.95341 0.99972 1.21884 1.00164 0.98929 0.95280 1.21084 0.94455 0.85910 0.94014 0.89198 1.46015 1.10462 1.21293 1.58811 1.17459 0.87314 0.81234 0.77889 1.90810 1.13848 1.77946 1.58473 1.20118 0.92288 0.97667 1.05932 1.25845 0.98537 1.04727 1.05559 1.83211 1.03734 1.10673 1.52117 1.25108 0.99143 0.96474 1.11082 1.98382 1.95484 1.27287 1.77082 1.21170 1.01129 0.91248 0.96258 1.22101 0.99363 0.93319 1.02053 0.93552 0.78353 0.91846 0.92666 0.92116 0.92458 0.92097 0.92048 0.76838 0.80292 0.81909 0.91698 0.91257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.77 13.06 55.49 0.72 -27.05 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 7 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.72 -17.55 5.12 -53.42 -0.27 -17.82 16 10 C 0.18 3.48 2.77 -67.93 -0.19 3.29 16 11 H 0.05 0.97 8.08 -51.93 -0.42 0.56 16 12 C -0.14 -2.36 5.50 -26.73 -0.15 -2.50 16 13 C -0.11 -1.61 5.92 -26.73 -0.16 -1.77 16 14 C -0.12 -1.63 5.49 -26.73 -0.15 -1.78 16 15 C 0.15 2.03 2.45 -67.93 -0.17 1.86 16 16 H 0.09 1.39 7.58 -51.93 -0.39 0.99 16 17 N -0.72 -8.15 5.05 -54.95 -0.28 -8.43 16 18 C 0.58 7.38 7.76 -12.63 -0.10 7.28 16 19 O -0.53 -8.75 16.46 5.25 0.09 -8.67 16 20 C -0.14 -1.44 5.98 -104.63 -0.63 -2.07 16 21 C -0.21 -1.53 10.38 29.92 0.31 -1.22 16 22 S 0.24 1.55 23.02 -107.50 -2.47 -0.92 16 23 C -0.18 -1.48 7.01 28.89 0.20 -1.28 16 24 Cl -0.01 -0.09 29.27 -51.86 -1.52 -1.60 16 25 C -0.07 -0.66 10.04 -38.98 -0.39 -1.05 16 26 C -0.13 -1.97 4.86 -26.73 -0.13 -2.10 16 27 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 28 H 0.38 9.81 7.80 -40.82 -0.32 9.49 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.40 3.44 7.10 -40.82 -0.29 3.15 16 36 H 0.18 0.87 7.01 -52.49 -0.37 0.50 16 37 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 353.33 15.07 5.32 5.32 Total: -1.00 -31.51 353.33 -10.36 -41.87 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -5.14 Total: 8.54 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: -1.78 Total: -8.45 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: 0.17 Total: -53.30 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.09 Total: -8.67 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -2.47 Total: -0.92 kcal Atomic # 17 Polarization: -0.09 SS G_CDS: -1.52 Total: -1.60 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.51 -10.36 -41.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981367968.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.937 kcal (2) G-P(sol) polarization free energy of solvation -31.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds