Wall clock time and date at job start Tue Mar 31 2020 15:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00264 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 H 1.09000 * 109.46989 * 324.99520 * 10 9 7 12 12 C 1.52996 * 109.47130 * 84.99932 * 10 9 7 13 13 C 1.52998 * 109.47178 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47164 * 300.00289 * 13 12 10 15 15 C 1.52996 * 109.47309 * 59.99792 * 14 13 12 16 16 H 1.09000 * 109.47521 * 60.00160 * 15 14 13 17 17 N 1.46505 * 109.47136 * 180.02562 * 15 14 13 18 18 C 1.34782 * 119.99954 * 274.99616 * 17 15 14 19 19 O 1.21634 * 119.99899 * 0.02562 * 18 17 15 20 20 C 1.47177 * 119.99974 * 179.97438 * 18 17 15 21 21 C 1.35979 * 123.45900 * 0.03026 * 20 18 17 22 22 S 1.70442 * 110.84727 * 179.97438 * 21 20 18 23 23 C 1.75504 * 92.45396 * 0.02562 * 22 21 20 24 24 Cl 1.73597 * 124.71794 * 179.97438 * 23 22 21 25 25 C 1.32893 * 110.56340 * 359.71358 * 23 22 21 26 26 C 1.53003 * 109.47208 * 299.99860 * 15 14 13 27 27 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 28 28 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 29 29 H 1.08998 * 109.47099 * 300.00036 * 12 10 9 30 30 H 1.09002 * 109.46807 * 60.00065 * 12 10 9 31 31 H 1.09000 * 109.46863 * 59.99636 * 13 12 10 32 32 H 1.08994 * 109.47323 * 180.02562 * 13 12 10 33 33 H 1.08998 * 109.47497 * 180.02562 * 14 13 12 34 34 H 1.09002 * 109.47179 * 300.00028 * 14 13 12 35 35 H 0.96998 * 120.00161 * 95.00536 * 17 15 14 36 36 H 1.08000 * 124.57398 * 359.96316 * 21 20 18 37 37 H 1.07998 * 123.47375 * 180.24082 * 25 23 22 38 38 H 1.08994 * 109.47227 * 300.00088 * 26 15 14 39 39 H 1.09004 * 109.47179 * 179.97438 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 1 2.9686 -3.5475 -0.6024 12 6 2.4219 -4.0431 1.4215 13 6 3.1863 -5.3685 1.4146 14 6 2.3085 -6.4602 0.7994 15 6 1.9446 -6.0739 -0.6355 16 1 2.8552 -5.9650 -1.2246 17 7 1.1037 -7.1191 -1.2244 18 6 1.6723 -8.1988 -1.7966 19 8 2.8836 -8.3057 -1.8237 20 6 0.8274 -9.2491 -2.3876 21 6 -0.5315 -9.2018 -2.3961 22 16 -1.1817 -10.5794 -3.1606 23 6 0.4100 -11.2455 -3.4815 24 17 0.7064 -12.7522 -4.2912 25 6 1.3569 -10.4333 -3.0234 26 6 1.1801 -4.7486 -0.6286 27 1 -0.4850 0.8401 0.0004 28 1 0.3555 -2.3880 -0.0068 29 1 3.0468 -3.2651 1.8599 30 1 1.5111 -4.1524 2.0104 31 1 4.0969 -5.2596 0.8255 32 1 3.4451 -5.6440 2.4369 33 1 2.8529 -7.4046 0.7949 34 1 1.3978 -6.5691 1.3884 35 1 0.1377 -7.0340 -1.2025 36 1 -1.1195 -8.3996 -1.9750 37 1 2.4132 -10.6392 -3.1138 38 1 0.2695 -4.8575 -0.0396 39 1 0.9213 -4.4731 -1.6510 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981367968.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:21 Heat of formation + Delta-G solvation = -34.539777 kcal Electronic energy + Delta-G solvation = -22595.672097 eV Core-core repulsion = 19075.400973 eV Total energy + Delta-G solvation = -3520.271123 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.26482 -39.50298 -38.29858 -37.32995 -36.24699 -34.86948 -32.94305 -31.43078 -30.09855 -29.24387 -26.17494 -25.66985 -23.56981 -23.04567 -21.86615 -21.12882 -20.30184 -19.47893 -18.99041 -18.10935 -17.33152 -16.43398 -16.20720 -16.07044 -15.75464 -15.34206 -15.09109 -15.06687 -14.75457 -14.61913 -14.51710 -14.17762 -13.77090 -13.55617 -13.39749 -12.89674 -12.83252 -12.66844 -12.62142 -12.25629 -12.14377 -12.03808 -11.96309 -11.83736 -11.64744 -11.48985 -11.37926 -10.93801 -10.85828 -10.14839 -9.95337 -9.49909 -8.98876 -7.93428 -5.20770 -0.43532 -0.00926 0.66327 0.71171 1.09484 1.47989 1.48700 1.56991 2.12381 2.24956 2.57311 3.40043 3.62568 3.80896 3.83825 3.88010 4.05174 4.14892 4.27582 4.31978 4.43890 4.51420 4.54814 4.58806 4.67499 4.72008 4.77811 4.95814 5.03034 5.12472 5.18401 5.23013 5.36473 5.45261 5.51429 5.54505 5.66739 6.29628 6.51186 7.17320 7.36088 8.11845 8.35679 9.29866 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.024863 B = 0.002184 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.920387 B =12817.307255 C =13358.433173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.967 3.033 4 H -0.289 1.289 5 H -0.295 1.295 6 H -0.272 1.272 7 C -0.236 4.236 8 H 0.071 0.929 9 N -0.735 5.735 10 C 0.176 3.824 11 H 0.035 0.965 12 C -0.126 4.126 13 C -0.107 4.107 14 C -0.116 4.116 15 C 0.159 3.841 16 H 0.069 0.931 17 N -0.705 5.705 18 C 0.577 3.423 19 O -0.578 6.578 20 C -0.171 4.171 21 C -0.193 4.193 22 S 0.305 5.695 23 C -0.188 4.188 24 Cl -0.009 7.009 25 C -0.083 4.083 26 C -0.114 4.114 27 H 0.250 0.750 28 H 0.374 0.626 29 H 0.040 0.960 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.413 0.587 36 H 0.208 0.792 37 H 0.150 0.850 38 H 0.078 0.922 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.413 -26.567 -4.938 27.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.797 3.203 4 H -0.216 1.216 5 H -0.222 1.222 6 H -0.197 1.197 7 C -0.368 4.368 8 H 0.089 0.911 9 N -0.375 5.375 10 C 0.068 3.932 11 H 0.053 0.947 12 C -0.167 4.167 13 C -0.145 4.145 14 C -0.155 4.155 15 C 0.054 3.946 16 H 0.087 0.913 17 N -0.355 5.355 18 C 0.364 3.636 19 O -0.460 6.460 20 C -0.189 4.189 21 C -0.332 4.332 22 S 0.570 5.430 23 C -0.331 4.331 24 Cl 0.019 6.981 25 C -0.114 4.114 26 C -0.153 4.153 27 H 0.059 0.941 28 H 0.206 0.794 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.250 0.750 36 H 0.225 0.775 37 H 0.168 0.832 38 H 0.097 0.903 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.854 -27.144 -5.350 28.089 hybrid contribution 1.361 1.707 0.242 2.197 sum -3.493 -25.437 -5.108 26.179 Atomic orbital electron populations 1.69794 1.06381 1.25909 1.59773 1.25481 0.96376 1.00796 1.04082 0.85226 0.77760 0.79978 0.77346 1.21594 1.22205 1.19685 1.19570 0.91287 0.85321 1.40596 0.91059 1.42564 1.05464 1.00755 1.88694 1.20310 0.93860 0.84778 0.94284 0.94674 1.22096 0.99693 0.96321 0.98552 1.21413 0.98085 0.93786 1.01254 1.21811 1.00572 0.98288 0.94792 1.20785 0.93716 0.85716 0.94353 0.91282 1.45790 1.11083 1.20384 1.58282 1.17817 0.87024 0.81592 0.77189 1.90783 1.15882 1.78969 1.60319 1.19815 0.93064 0.97585 1.08431 1.26241 0.97702 1.05602 1.03678 1.83076 1.01207 1.08757 1.49973 1.25280 1.00419 0.96485 1.10923 1.98382 1.95659 1.27054 1.76990 1.21117 1.01030 0.91937 0.97303 1.21876 0.99184 0.92794 1.01450 0.94088 0.79364 0.94076 0.92632 0.92449 0.90586 0.92093 0.90516 0.74962 0.77518 0.83234 0.90301 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.19 13.06 21.65 0.28 -57.91 16 2 C -0.08 -4.27 5.50 84.86 0.47 -3.80 16 3 Si 0.97 45.99 29.55 68.60 2.03 48.02 16 4 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 5 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 6 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.24 -12.93 9.93 84.04 0.83 -12.10 16 8 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 9 N -0.74 -35.88 5.12 -322.93 -1.65 -37.54 16 10 C 0.18 6.68 2.77 44.99 0.12 6.81 16 11 H 0.04 1.42 8.08 -2.39 -0.02 1.41 16 12 C -0.13 -4.28 5.50 30.59 0.17 -4.11 16 13 C -0.11 -2.86 5.92 30.59 0.18 -2.68 16 14 C -0.12 -2.84 5.49 30.59 0.17 -2.68 16 15 C 0.16 4.16 2.45 44.99 0.11 4.27 16 16 H 0.07 2.14 7.58 -2.39 -0.02 2.12 16 17 N -0.70 -14.91 5.05 -446.02 -2.25 -17.16 16 18 C 0.58 14.38 7.76 86.59 0.67 15.05 16 19 O -0.58 -19.32 16.46 -4.14 -0.07 -19.39 16 20 C -0.17 -3.25 5.98 -19.87 -0.12 -3.37 16 21 C -0.19 -2.25 10.38 67.29 0.70 -1.55 16 22 S 0.31 3.03 23.02 -56.49 -1.30 1.73 16 23 C -0.19 -2.92 7.01 66.64 0.47 -2.45 16 24 Cl -0.01 -0.14 29.27 -2.72 -0.08 -0.22 16 25 C -0.08 -1.60 10.04 22.68 0.23 -1.38 16 26 C -0.11 -3.37 4.86 30.60 0.15 -3.22 16 27 H 0.25 14.64 8.31 -92.70 -0.77 13.87 16 28 H 0.37 19.35 7.80 -92.71 -0.72 18.63 16 29 H 0.04 1.55 8.14 -2.39 -0.02 1.54 16 30 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.06 1.58 8.14 -2.39 -0.02 1.57 16 32 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.41 6.01 7.10 -92.71 -0.66 5.35 16 36 H 0.21 1.11 7.01 -2.91 -0.02 1.09 16 37 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 38 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -69.01 353.33 0.82 -68.19 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: -0.29 Total: 25.47 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: 4.15 Total: -11.20 kcal Atomic # 7 Polarization: -108.99 SS G_CDS: -3.62 Total: -112.61 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.07 Total: -19.39 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Atomic # 16 Polarization: 3.03 SS G_CDS: -1.30 Total: 1.73 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -0.08 Total: -0.22 kcal Total: -69.01 0.82 -68.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981367968.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.655 kcal (2) G-P(sol) polarization free energy of solvation -69.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds