Wall clock time and date at job start Tue Mar 31 2020 15:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86806 * 119.99616 * 2 1 4 4 H 1.48499 * 109.46993 * 269.99676 * 3 2 1 5 5 H 1.48494 * 109.47284 * 30.00014 * 3 2 1 6 6 H 1.48495 * 109.46854 * 150.00254 * 3 2 1 7 7 C 1.38807 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00053 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99907 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99638 * 179.97438 * 9 7 2 11 11 H 1.08995 * 109.47237 * 35.00683 * 10 9 7 12 12 C 1.52995 * 109.47560 * 275.00093 * 10 9 7 13 13 C 1.53010 * 109.46972 * 300.00359 * 12 10 9 14 14 C 1.52995 * 109.46924 * 299.99675 * 13 12 10 15 15 C 1.52998 * 109.47277 * 60.00088 * 14 13 12 16 16 H 1.09006 * 109.47206 * 59.99841 * 15 14 13 17 17 N 1.46502 * 109.47416 * 179.97438 * 15 14 13 18 18 C 1.34771 * 120.00035 * 275.00130 * 17 15 14 19 19 O 1.21718 * 120.00289 * 359.97438 * 18 17 15 20 20 C 1.46473 * 120.00011 * 179.97438 * 18 17 15 21 21 C 1.36692 * 125.44567 * 180.32139 * 20 18 17 22 22 C 1.37403 * 113.31187 * 180.16918 * 21 20 18 23 23 C 1.34016 * 115.07043 * 359.50430 * 22 21 20 24 24 Cl 1.73610 * 124.52826 * 180.25415 * 23 22 21 25 25 S 1.70612 * 110.94038 * 0.27780 * 23 22 21 26 26 C 1.52998 * 109.47179 * 300.00096 * 15 14 13 27 27 H 0.96998 * 120.00441 * 359.97438 * 1 2 3 28 28 H 0.96996 * 120.00444 * 0.02562 * 9 7 2 29 29 H 1.08995 * 109.47829 * 180.02562 * 12 10 9 30 30 H 1.09001 * 109.47274 * 59.99780 * 12 10 9 31 31 H 1.09003 * 109.46711 * 179.97438 * 13 12 10 32 32 H 1.08998 * 109.47035 * 60.00178 * 13 12 10 33 33 H 1.08998 * 109.47675 * 300.00111 * 14 13 12 34 34 H 1.09003 * 109.46832 * 180.02562 * 14 13 12 35 35 H 0.96998 * 119.99616 * 94.99691 * 17 15 14 36 36 H 1.07999 * 123.34858 * 359.96494 * 21 20 18 37 37 H 1.08002 * 122.46638 * 179.78359 * 22 21 20 38 38 H 1.09004 * 109.47463 * 180.02562 * 26 15 14 39 39 H 1.09001 * 109.47167 * 299.99651 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9688 -3.5505 0.5900 12 6 2.4222 -4.0356 -1.4364 13 6 1.1438 -4.1847 -2.2639 14 6 0.2667 -5.2801 -1.6543 15 6 -0.0973 -4.9013 -0.2173 16 1 -0.6423 -3.9573 -0.2173 17 7 -0.9377 -5.9499 0.3663 18 6 -2.2698 -5.9370 0.1625 19 8 -2.7749 -5.0540 -0.5059 20 6 -3.1100 -6.9857 0.7455 21 6 -4.4662 -7.0842 0.6056 22 6 -5.0034 -8.1655 1.2615 23 6 -4.1172 -8.9347 1.9088 24 17 -4.5256 -10.3616 2.8094 25 16 -2.5343 -8.3238 1.7302 26 6 1.1810 -4.7521 0.6101 27 1 -0.4851 0.8400 0.0004 28 1 0.3556 -2.3881 -0.0002 29 1 2.9668 -4.9797 -1.4365 30 1 3.0470 -3.2552 -1.8708 31 1 1.4032 -4.4542 -3.2877 32 1 0.5988 -3.2408 -2.2640 33 1 0.8116 -6.2241 -1.6542 34 1 -0.6438 -5.3867 -2.2440 35 1 -0.5353 -6.6533 0.8992 36 1 -5.0573 -6.3801 0.0388 37 1 -6.0614 -8.3823 1.2520 38 1 0.9217 -4.4827 1.6340 39 1 1.7260 -5.6960 0.6102 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981502605.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:55 Heat of formation + Delta-G solvation = -8.362659 kcal Electronic energy + Delta-G solvation = -23067.770936 eV Core-core repulsion = 19548.634938 eV Total energy + Delta-G solvation = -3519.135998 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -40.03021 -38.50377 -37.74183 -36.82025 -34.52612 -33.07566 -30.96059 -30.39047 -28.88557 -27.96913 -25.24449 -23.65594 -22.51941 -21.89262 -20.89543 -19.87060 -19.16941 -18.19206 -17.28186 -16.51811 -16.08266 -15.58515 -15.12226 -14.62597 -14.50099 -14.06085 -13.91331 -13.68238 -13.61053 -13.55483 -13.16920 -12.90269 -12.40734 -12.05297 -11.84725 -11.77260 -11.72351 -11.39398 -11.23250 -10.89834 -10.82982 -10.72604 -10.28677 -10.18899 -10.09784 -10.02877 -9.60601 -9.50263 -9.12426 -9.03519 -8.91022 -8.76655 -6.92289 -5.71966 -3.01357 0.03755 0.62796 1.32140 1.74399 1.98584 3.10602 3.14627 3.45803 3.50775 3.52715 4.62007 4.64225 4.77651 4.97758 5.10522 5.20684 5.44843 5.46802 5.61491 5.65443 5.69326 5.74356 5.83548 5.85644 5.89497 6.07600 6.10152 6.18645 6.34330 6.42993 6.60862 6.63422 6.79393 6.85061 7.01938 7.11529 7.48534 7.73601 8.18146 8.45819 9.56931 10.14257 10.48436 11.50163 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.021974 B = 0.002610 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.916626 B =10727.127533 C =11156.253504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.013 4.013 3 Si 0.904 3.096 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.722 5.722 10 C 0.180 3.820 11 H 0.052 0.948 12 C -0.136 4.136 13 C -0.109 4.109 14 C -0.121 4.121 15 C 0.146 3.854 16 H 0.103 0.897 17 N -0.719 5.719 18 C 0.585 3.415 19 O -0.513 6.513 20 C -0.247 4.247 21 C -0.054 4.054 22 C -0.131 4.131 23 C -0.172 4.172 24 Cl -0.011 7.011 25 S 0.246 5.754 26 C -0.129 4.129 27 H 0.255 0.745 28 H 0.384 0.616 29 H 0.043 0.957 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.079 0.921 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.392 0.608 36 H 0.164 0.836 37 H 0.155 0.845 38 H 0.068 0.932 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.108 -22.706 3.395 23.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.209 4.209 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.209 1.209 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.364 5.364 10 C 0.069 3.931 11 H 0.070 0.930 12 C -0.176 4.176 13 C -0.148 4.148 14 C -0.159 4.159 15 C 0.043 3.957 16 H 0.121 0.879 17 N -0.369 5.369 18 C 0.369 3.631 19 O -0.390 6.390 20 C -0.368 4.368 21 C -0.087 4.087 22 C -0.164 4.164 23 C -0.318 4.318 24 Cl 0.018 6.982 25 S 0.512 5.488 26 C -0.168 4.168 27 H 0.065 0.935 28 H 0.220 0.780 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.225 0.775 36 H 0.181 0.819 37 H 0.172 0.828 38 H 0.087 0.913 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.956 -22.506 3.550 23.317 hybrid contribution -1.270 0.757 -0.133 1.485 sum -6.226 -21.749 3.417 22.879 Atomic orbital electron populations 1.69664 1.05024 1.25632 1.57475 1.24736 0.95459 0.97599 1.03078 0.86234 0.78614 0.84132 0.77453 1.21812 1.21881 1.20862 1.19215 0.90941 0.84132 1.42780 0.91220 1.42510 1.05780 0.99609 1.88521 1.20151 0.93959 0.85907 0.93086 0.93015 1.22186 0.96901 0.99503 0.99018 1.21358 0.96701 0.99256 0.97444 1.21853 0.99748 0.98832 0.95505 1.21154 0.91124 0.90994 0.92467 0.87935 1.46079 1.06390 1.30279 1.54135 1.16857 0.81899 0.83868 0.80466 1.90910 1.73247 1.35896 1.38928 1.24933 0.98797 1.02999 1.10114 1.20683 0.92656 0.97288 0.98041 1.20091 1.01647 0.95164 0.99508 1.24975 1.00811 0.98450 1.07556 1.98385 1.93196 1.34426 1.72216 1.83125 1.03144 1.17050 1.45461 1.22097 0.95340 0.99693 0.99632 0.93500 0.78035 0.93851 0.91940 0.93202 0.90270 0.92693 0.92193 0.77493 0.81890 0.82781 0.91279 0.91978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.23 13.06 55.49 0.72 -27.51 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 3 Si 0.90 22.41 29.55 -169.99 -5.02 17.38 16 4 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.72 -17.46 4.28 -53.43 -0.23 -17.69 16 10 C 0.18 3.38 3.10 -67.93 -0.21 3.17 16 11 H 0.05 0.98 8.08 -51.93 -0.42 0.57 16 12 C -0.14 -2.32 5.61 -26.73 -0.15 -2.47 16 13 C -0.11 -1.87 5.77 -26.73 -0.15 -2.02 16 14 C -0.12 -1.85 5.49 -26.73 -0.15 -2.00 16 15 C 0.15 2.34 2.28 -67.93 -0.16 2.19 16 16 H 0.10 2.10 5.94 -51.93 -0.31 1.80 16 17 N -0.72 -9.66 5.07 -55.18 -0.28 -9.94 16 18 C 0.58 8.77 7.74 -12.95 -0.10 8.67 16 19 O -0.51 -9.88 16.50 5.17 0.09 -9.80 16 20 C -0.25 -2.90 6.45 -36.83 -0.24 -3.13 16 21 C -0.05 -0.57 10.01 -40.44 -0.40 -0.98 16 22 C -0.13 -1.15 10.08 -41.37 -0.42 -1.57 16 23 C -0.17 -1.53 6.82 29.25 0.20 -1.33 16 24 Cl -0.01 -0.09 29.27 -51.86 -1.52 -1.60 16 25 S 0.25 2.15 22.15 -107.50 -2.38 -0.23 16 26 C -0.13 -1.98 5.08 -26.73 -0.14 -2.11 16 27 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 28 H 0.38 10.07 6.06 -40.82 -0.25 9.82 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.08 1.65 7.60 -51.93 -0.39 1.25 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.39 4.05 7.71 -40.82 -0.31 3.74 16 36 H 0.16 1.67 8.06 -52.49 -0.42 1.24 16 37 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 349.69 15.07 5.27 5.27 Total: -1.00 -31.58 349.69 -10.54 -42.12 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -5.04 Total: 10.69 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -2.16 Total: -8.70 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: 0.22 Total: -55.13 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.80 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -2.38 Total: -0.23 kcal Atomic # 17 Polarization: -0.09 SS G_CDS: -1.52 Total: -1.60 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.58 -10.54 -42.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981502605.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.760 kcal (2) G-P(sol) polarization free energy of solvation -31.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds