Wall clock time and date at job start Tue Mar 31 2020 15:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86806 * 119.99616 * 2 1 4 4 H 1.48499 * 109.46993 * 269.99676 * 3 2 1 5 5 H 1.48494 * 109.47284 * 30.00014 * 3 2 1 6 6 H 1.48495 * 109.46854 * 150.00254 * 3 2 1 7 7 C 1.38807 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00053 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99907 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99638 * 179.97438 * 9 7 2 11 11 H 1.08995 * 109.47237 * 35.00683 * 10 9 7 12 12 C 1.52995 * 109.47560 * 275.00093 * 10 9 7 13 13 C 1.53010 * 109.46972 * 300.00359 * 12 10 9 14 14 C 1.52995 * 109.46924 * 299.99675 * 13 12 10 15 15 C 1.52998 * 109.47277 * 60.00088 * 14 13 12 16 16 H 1.09006 * 109.47206 * 59.99841 * 15 14 13 17 17 N 1.46502 * 109.47416 * 179.97438 * 15 14 13 18 18 C 1.34771 * 120.00035 * 275.00130 * 17 15 14 19 19 O 1.21718 * 120.00289 * 359.97438 * 18 17 15 20 20 C 1.46473 * 120.00011 * 179.97438 * 18 17 15 21 21 C 1.36692 * 125.44567 * 180.32139 * 20 18 17 22 22 C 1.37403 * 113.31187 * 180.16918 * 21 20 18 23 23 C 1.34016 * 115.07043 * 359.50430 * 22 21 20 24 24 Cl 1.73610 * 124.52826 * 180.25415 * 23 22 21 25 25 S 1.70612 * 110.94038 * 0.27780 * 23 22 21 26 26 C 1.52998 * 109.47179 * 300.00096 * 15 14 13 27 27 H 0.96998 * 120.00441 * 359.97438 * 1 2 3 28 28 H 0.96996 * 120.00444 * 0.02562 * 9 7 2 29 29 H 1.08995 * 109.47829 * 180.02562 * 12 10 9 30 30 H 1.09001 * 109.47274 * 59.99780 * 12 10 9 31 31 H 1.09003 * 109.46711 * 179.97438 * 13 12 10 32 32 H 1.08998 * 109.47035 * 60.00178 * 13 12 10 33 33 H 1.08998 * 109.47675 * 300.00111 * 14 13 12 34 34 H 1.09003 * 109.46832 * 180.02562 * 14 13 12 35 35 H 0.96998 * 119.99616 * 94.99691 * 17 15 14 36 36 H 1.07999 * 123.34858 * 359.96494 * 21 20 18 37 37 H 1.08002 * 122.46638 * 179.78359 * 22 21 20 38 38 H 1.09004 * 109.47463 * 180.02562 * 26 15 14 39 39 H 1.09001 * 109.47167 * 299.99651 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9688 -3.5505 0.5900 12 6 2.4222 -4.0356 -1.4364 13 6 1.1438 -4.1847 -2.2639 14 6 0.2667 -5.2801 -1.6543 15 6 -0.0973 -4.9013 -0.2173 16 1 -0.6423 -3.9573 -0.2173 17 7 -0.9377 -5.9499 0.3663 18 6 -2.2698 -5.9370 0.1625 19 8 -2.7749 -5.0540 -0.5059 20 6 -3.1100 -6.9857 0.7455 21 6 -4.4662 -7.0842 0.6056 22 6 -5.0034 -8.1655 1.2615 23 6 -4.1172 -8.9347 1.9088 24 17 -4.5256 -10.3616 2.8094 25 16 -2.5343 -8.3238 1.7302 26 6 1.1810 -4.7521 0.6101 27 1 -0.4851 0.8400 0.0004 28 1 0.3556 -2.3881 -0.0002 29 1 2.9668 -4.9797 -1.4365 30 1 3.0470 -3.2552 -1.8708 31 1 1.4032 -4.4542 -3.2877 32 1 0.5988 -3.2408 -2.2640 33 1 0.8116 -6.2241 -1.6542 34 1 -0.6438 -5.3867 -2.2440 35 1 -0.5353 -6.6533 0.8992 36 1 -5.0573 -6.3801 0.0388 37 1 -6.0614 -8.3823 1.2520 38 1 0.9217 -4.4827 1.6340 39 1 1.7260 -5.6960 0.6102 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981502605.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:54 Heat of formation + Delta-G solvation = -28.413366 kcal Electronic energy + Delta-G solvation = -23068.640400 eV Core-core repulsion = 19548.634938 eV Total energy + Delta-G solvation = -3520.005462 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.23954 -39.64317 -38.74380 -37.57237 -36.05102 -34.77092 -32.71818 -31.47053 -30.19893 -29.44160 -26.13520 -25.64514 -23.63992 -23.30323 -22.11793 -20.85977 -20.23319 -19.45272 -19.20808 -17.53082 -17.19849 -16.64752 -16.52279 -16.27119 -15.70030 -15.35635 -15.28401 -15.15307 -14.89035 -14.64546 -14.39412 -13.85632 -13.67045 -13.42975 -13.36851 -12.87069 -12.82597 -12.60461 -12.59270 -12.50375 -12.19224 -12.13599 -11.90576 -11.79920 -11.60571 -11.52085 -11.23622 -10.96459 -10.82209 -10.20135 -9.78769 -9.72582 -8.94045 -7.89031 -5.16684 -0.79069 -0.11626 0.55191 1.03197 1.16888 1.47068 1.48777 1.56907 1.98754 2.06501 2.58994 3.44184 3.62849 3.78897 3.92403 4.01815 4.08593 4.18183 4.25279 4.36172 4.45583 4.56399 4.69742 4.72133 4.75945 4.82033 4.91611 5.01909 5.09702 5.11236 5.19316 5.30694 5.40497 5.44415 5.54132 5.63027 5.69085 6.32823 6.39695 7.07975 7.38376 8.18045 8.38227 9.34494 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.021974 B = 0.002610 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.916626 B =10727.127533 C =11156.253504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.082 4.082 3 Si 0.969 3.031 4 H -0.291 1.291 5 H -0.301 1.301 6 H -0.266 1.266 7 C -0.230 4.230 8 H 0.079 0.921 9 N -0.735 5.735 10 C 0.168 3.832 11 H 0.056 0.944 12 C -0.127 4.127 13 C -0.106 4.106 14 C -0.111 4.111 15 C 0.152 3.848 16 H 0.048 0.952 17 N -0.705 5.705 18 C 0.583 3.417 19 O -0.570 6.570 20 C -0.282 4.282 21 C -0.052 4.052 22 C -0.133 4.133 23 C -0.174 4.174 24 Cl 0.003 6.997 25 S 0.303 5.697 26 C -0.117 4.117 27 H 0.247 0.753 28 H 0.370 0.630 29 H 0.087 0.913 30 H 0.041 0.959 31 H 0.069 0.931 32 H 0.028 0.972 33 H 0.093 0.907 34 H 0.044 0.956 35 H 0.410 0.590 36 H 0.157 0.843 37 H 0.176 0.824 38 H 0.061 0.939 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.551 -25.983 4.300 26.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.274 4.274 3 Si 0.798 3.202 4 H -0.219 1.219 5 H -0.228 1.228 6 H -0.191 1.191 7 C -0.362 4.362 8 H 0.097 0.903 9 N -0.376 5.376 10 C 0.059 3.941 11 H 0.074 0.926 12 C -0.167 4.167 13 C -0.144 4.144 14 C -0.149 4.149 15 C 0.048 3.952 16 H 0.066 0.934 17 N -0.356 5.356 18 C 0.369 3.631 19 O -0.450 6.450 20 C -0.403 4.403 21 C -0.086 4.086 22 C -0.165 4.165 23 C -0.320 4.320 24 Cl 0.032 6.968 25 S 0.570 5.430 26 C -0.155 4.155 27 H 0.056 0.944 28 H 0.203 0.797 29 H 0.105 0.895 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.047 0.953 33 H 0.111 0.889 34 H 0.063 0.937 35 H 0.247 0.753 36 H 0.175 0.825 37 H 0.193 0.807 38 H 0.080 0.920 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.319 -25.863 4.483 26.457 hybrid contribution -1.751 1.608 -0.373 2.406 sum -5.069 -24.255 4.111 25.117 Atomic orbital electron populations 1.69851 1.06710 1.25654 1.60235 1.25533 0.96206 1.01048 1.04564 0.85199 0.77795 0.79972 0.77185 1.21867 1.22777 1.19114 1.19653 0.91459 0.85294 1.39778 0.90335 1.42755 1.05383 1.01005 1.88421 1.20492 0.94190 0.84757 0.94626 0.92618 1.22067 0.96635 1.00900 0.97058 1.21289 0.96589 0.97569 0.98992 1.21762 0.99161 0.99655 0.94324 1.20845 0.91127 0.89617 0.93637 0.93351 1.45828 1.05896 1.29973 1.53879 1.17297 0.82309 0.83825 0.79619 1.90881 1.74231 1.38359 1.41565 1.24654 0.98990 1.04177 1.12528 1.20810 0.92445 0.97623 0.97712 1.20193 1.02804 0.94393 0.99106 1.25192 1.01199 0.98644 1.06984 1.98399 1.93128 1.33537 1.71770 1.82824 1.02251 1.14506 1.43459 1.21988 0.94591 1.00514 0.98453 0.94432 0.79686 0.89471 0.94044 0.91279 0.95308 0.88850 0.93745 0.75278 0.82506 0.80678 0.91996 0.87132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.96 13.06 21.65 0.28 -61.67 16 2 C -0.08 -4.80 5.50 84.86 0.47 -4.33 16 3 Si 0.97 47.20 29.55 68.60 2.03 49.23 16 4 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 5 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.23 -12.70 9.93 84.03 0.83 -11.86 16 8 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 9 N -0.73 -36.53 4.28 -322.95 -1.38 -37.91 16 10 C 0.17 6.12 3.10 44.99 0.14 6.26 16 11 H 0.06 2.00 8.08 -2.39 -0.02 1.98 16 12 C -0.13 -4.09 5.61 30.60 0.17 -3.92 16 13 C -0.11 -3.59 5.77 30.60 0.18 -3.41 16 14 C -0.11 -3.27 5.49 30.59 0.17 -3.10 16 15 C 0.15 4.87 2.28 44.99 0.10 4.98 16 16 H 0.05 2.13 5.94 -2.38 -0.01 2.11 16 17 N -0.70 -18.37 5.07 -446.69 -2.27 -20.64 16 18 C 0.58 17.86 7.74 86.39 0.67 18.53 16 19 O -0.57 -23.44 16.50 -4.41 -0.07 -23.52 16 20 C -0.28 -6.45 6.45 24.06 0.16 -6.30 16 21 C -0.05 -1.08 10.01 21.71 0.22 -0.87 16 22 C -0.13 -2.09 10.08 21.11 0.21 -1.87 16 23 C -0.17 -2.65 6.82 66.86 0.46 -2.19 16 24 Cl 0.00 0.04 29.27 -2.72 -0.08 -0.04 16 25 S 0.30 4.53 22.15 -56.49 -1.25 3.28 16 26 C -0.12 -3.36 5.08 30.59 0.16 -3.20 16 27 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 28 H 0.37 20.55 6.06 -92.71 -0.56 19.99 16 29 H 0.09 2.10 8.14 -2.39 -0.02 2.09 16 30 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.03 1.25 7.60 -2.39 -0.02 1.23 16 33 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.41 7.44 7.71 -92.71 -0.71 6.72 16 36 H 0.16 3.36 8.06 -2.91 -0.02 3.33 16 37 H 0.18 1.94 8.06 -2.91 -0.02 1.91 16 38 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -73.43 349.69 1.00 -72.43 By element: Atomic # 1 Polarization: 30.32 SS G_CDS: -0.18 Total: 30.13 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: 3.92 Total: -11.29 kcal Atomic # 7 Polarization: -116.86 SS G_CDS: -3.36 Total: -120.22 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.07 Total: -23.52 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.23 kcal Atomic # 16 Polarization: 4.53 SS G_CDS: -1.25 Total: 3.28 kcal Atomic # 17 Polarization: 0.04 SS G_CDS: -0.08 Total: -0.04 kcal Total: -73.43 1.00 -72.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981502605.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.020 kcal (2) G-P(sol) polarization free energy of solvation -73.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds