Wall clock time and date at job start Tue Mar 31 2020 15:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86810 * 120.00121 * 2 1 4 4 H 1.48491 * 109.47112 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46742 * 299.99926 * 3 2 1 6 6 H 1.48496 * 109.46937 * 59.99767 * 3 2 1 7 7 C 1.38818 * 120.00303 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00251 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99552 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00061 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.47109 * 34.99989 * 10 9 7 12 12 C 1.53000 * 109.46906 * 275.00140 * 10 9 7 13 13 C 1.53001 * 109.46880 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47165 * 60.00378 * 13 12 10 15 15 C 1.53000 * 109.46913 * 299.99602 * 14 13 12 16 16 H 1.09002 * 109.47535 * 300.00197 * 15 14 13 17 17 N 1.46503 * 109.47189 * 180.02562 * 15 14 13 18 18 C 1.34775 * 119.99915 * 85.00485 * 17 15 14 19 19 O 1.21710 * 119.99852 * 359.97438 * 18 17 15 20 20 C 1.46467 * 119.99852 * 179.97438 * 18 17 15 21 21 C 1.36688 * 125.44933 * 179.97438 * 20 18 17 22 22 C 1.37401 * 113.31901 * 179.97438 * 21 20 18 23 23 C 1.34018 * 115.07284 * 0.02562 * 22 21 20 24 24 Cl 1.73592 * 124.53301 * 179.97438 * 23 22 21 25 25 S 1.70621 * 110.93403 * 359.97438 * 23 22 21 26 26 C 1.52999 * 109.47251 * 154.99993 * 10 9 7 27 27 H 0.97005 * 120.00366 * 0.02562 * 1 2 3 28 28 H 0.97000 * 120.00405 * 359.97438 * 9 7 2 29 29 H 1.09002 * 109.47535 * 299.99716 * 12 10 9 30 30 H 1.09004 * 109.47127 * 59.99922 * 12 10 9 31 31 H 1.08998 * 109.47047 * 179.97438 * 13 12 10 32 32 H 1.08997 * 109.47376 * 299.99996 * 13 12 10 33 33 H 1.09002 * 109.47256 * 180.02562 * 14 13 12 34 34 H 1.08997 * 109.47285 * 59.99562 * 14 13 12 35 35 H 0.97004 * 119.99797 * 265.00162 * 17 15 14 36 36 H 1.08001 * 123.34146 * 359.97438 * 21 20 18 37 37 H 1.07998 * 122.46672 * 180.02562 * 22 21 20 38 38 H 1.09002 * 109.46963 * 60.00424 * 26 10 9 39 39 H 1.08998 * 109.47142 * 300.00032 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9687 -3.5506 0.5900 12 6 2.4219 -4.0356 -1.4365 13 6 3.1874 -5.3603 -1.4364 14 6 2.3107 -6.4559 -0.8267 15 6 1.9468 -6.0772 0.6103 16 1 2.8575 -5.9705 1.1997 17 7 1.1078 -7.1265 1.1944 18 6 1.6784 -8.2081 1.7611 19 8 2.8907 -8.3132 1.7872 20 6 0.8396 -9.2569 2.3455 21 6 1.2980 -10.3963 2.9455 22 6 0.2921 -11.2098 3.4085 23 6 -0.9501 -10.7542 3.1955 24 17 -2.3980 -11.5821 3.6768 25 16 -0.9182 -9.2515 2.3879 26 6 1.1808 -4.7521 0.6102 27 1 -0.4851 0.8401 -0.0004 28 1 0.3556 -2.3881 0.0005 29 1 1.5112 -4.1418 -2.0260 30 1 3.0469 -3.2552 -1.8708 31 1 3.4463 -5.6304 -2.4602 32 1 4.0981 -5.2537 -0.8471 33 1 2.8562 -7.3996 -0.8262 34 1 1.4000 -6.5625 -1.4160 35 1 0.1416 -7.0429 1.1733 36 1 2.3469 -10.6336 3.0458 37 1 0.4880 -12.1473 3.9074 38 1 0.2702 -4.8584 0.0206 39 1 0.9216 -4.4823 1.6339 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981502608.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:06 Heat of formation + Delta-G solvation = -13.315472 kcal Electronic energy + Delta-G solvation = -22576.582925 eV Core-core repulsion = 19057.232157 eV Total energy + Delta-G solvation = -3519.350768 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -40.17662 -38.53776 -37.78141 -36.89690 -34.75701 -33.41743 -31.16852 -30.52205 -29.00086 -27.77931 -25.34840 -23.76486 -22.57901 -21.81896 -20.62761 -20.07187 -19.58314 -18.76304 -17.10525 -16.66905 -16.24847 -15.78526 -15.29338 -14.70644 -14.42507 -14.17425 -14.03340 -13.81085 -13.71313 -13.54870 -13.25485 -13.02601 -12.70627 -12.20011 -12.13539 -11.91281 -11.80214 -11.28910 -11.01739 -10.99062 -10.90509 -10.75494 -10.41909 -10.38768 -10.22978 -10.13298 -9.77656 -9.64693 -9.25560 -9.12413 -9.01306 -8.88775 -6.97874 -5.78395 -3.07012 -0.06757 0.55059 1.23904 1.67142 1.87041 2.94027 2.96119 3.42523 3.48726 3.50517 4.49768 4.56465 4.67337 4.87684 4.94000 5.04283 5.27945 5.35099 5.46894 5.53351 5.59449 5.64786 5.70081 5.74860 5.84180 5.93672 5.98851 6.11000 6.23089 6.28808 6.45861 6.49970 6.57641 6.70043 6.94278 7.10142 7.30590 7.70234 7.97555 8.40222 9.51649 10.08552 10.43302 11.44369 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.020273 B = 0.002363 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.801404 B =11844.638409 C =12711.663738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.071 0.929 9 N -0.724 5.724 10 C 0.184 3.816 11 H 0.049 0.951 12 C -0.137 4.137 13 C -0.114 4.114 14 C -0.125 4.125 15 C 0.149 3.851 16 H 0.092 0.908 17 N -0.717 5.717 18 C 0.589 3.411 19 O -0.524 6.524 20 C -0.254 4.254 21 C -0.052 4.052 22 C -0.134 4.134 23 C -0.170 4.170 24 Cl -0.008 7.008 25 S 0.255 5.745 26 C -0.131 4.131 27 H 0.254 0.746 28 H 0.383 0.617 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.396 0.604 36 H 0.163 0.837 37 H 0.155 0.845 38 H 0.065 0.935 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.818 -24.879 4.740 25.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.089 0.911 9 N -0.365 5.365 10 C 0.073 3.927 11 H 0.067 0.933 12 C -0.178 4.178 13 C -0.153 4.153 14 C -0.163 4.163 15 C 0.045 3.955 16 H 0.110 0.890 17 N -0.367 5.367 18 C 0.374 3.626 19 O -0.402 6.402 20 C -0.376 4.376 21 C -0.085 4.085 22 C -0.167 4.167 23 C -0.316 4.316 24 Cl 0.021 6.979 25 S 0.521 5.479 26 C -0.170 4.170 27 H 0.064 0.936 28 H 0.217 0.783 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.230 0.770 36 H 0.180 0.820 37 H 0.172 0.828 38 H 0.084 0.916 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.093 -23.844 4.309 24.427 hybrid contribution 0.424 -0.257 0.571 0.756 sum -2.670 -24.101 4.880 24.735 Atomic orbital electron populations 1.69664 1.05102 1.25527 1.57900 1.24738 0.95514 0.97683 1.03083 0.86137 0.78845 0.84191 0.77166 1.20530 1.21903 1.21901 1.19286 0.91053 0.84023 1.42383 0.91074 1.42405 1.05752 0.99701 1.88602 1.20091 0.94089 0.85482 0.92998 0.93279 1.22300 0.99755 0.95259 1.00458 1.21484 0.98508 0.95295 1.00012 1.21895 1.00257 0.98983 0.95194 1.21134 0.94424 0.85756 0.94148 0.89033 1.46085 1.10322 1.21135 1.59175 1.16834 0.87087 0.80828 0.77814 1.90851 1.13139 1.77826 1.58398 1.24875 0.96944 1.02692 1.13064 1.20648 1.01436 0.91226 0.95161 1.20086 0.89687 1.02922 1.03982 1.25027 0.93207 1.02431 1.10968 1.98393 1.32909 1.76597 1.90048 1.83291 1.00661 1.12734 1.51201 1.22124 0.99411 0.93232 1.02187 0.93587 0.78329 0.92618 0.91820 0.92409 0.92094 0.92051 0.91942 0.76994 0.81992 0.82760 0.91598 0.91169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.76 13.06 55.49 0.72 -27.04 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 6 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 7 C -0.24 -6.42 9.93 -15.06 -0.15 -6.57 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.72 -17.53 5.12 -53.43 -0.27 -17.80 16 10 C 0.18 3.48 2.77 -67.93 -0.19 3.29 16 11 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 12 C -0.14 -2.35 5.50 -26.73 -0.15 -2.50 16 13 C -0.11 -1.59 5.92 -26.73 -0.16 -1.75 16 14 C -0.12 -1.63 5.49 -26.73 -0.15 -1.78 16 15 C 0.15 2.03 2.45 -67.90 -0.17 1.86 16 16 H 0.09 1.39 7.57 -51.93 -0.39 1.00 16 17 N -0.72 -8.46 5.07 -55.15 -0.28 -8.73 16 18 C 0.59 7.54 7.74 -12.95 -0.10 7.44 16 19 O -0.52 -8.40 16.50 5.18 0.09 -8.31 16 20 C -0.25 -2.60 6.45 -36.83 -0.24 -2.84 16 21 C -0.05 -0.47 10.01 -40.45 -0.40 -0.87 16 22 C -0.13 -1.02 10.08 -41.37 -0.42 -1.44 16 23 C -0.17 -1.38 6.82 29.25 0.20 -1.18 16 24 Cl -0.01 -0.06 29.27 -51.86 -1.52 -1.58 16 25 S 0.25 2.06 22.15 -107.50 -2.38 -0.32 16 26 C -0.13 -2.00 4.86 -26.71 -0.13 -2.13 16 27 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.38 9.82 7.80 -40.82 -0.32 9.51 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.40 3.84 7.71 -40.82 -0.31 3.53 16 36 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 37 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 354.13 15.07 5.34 5.34 Total: -1.00 -30.96 354.13 -10.69 -41.65 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -5.22 Total: 8.59 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -2.14 Total: -8.97 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: 0.17 Total: -53.57 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: 0.09 Total: -8.31 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -2.38 Total: -0.32 kcal Atomic # 17 Polarization: -0.06 SS G_CDS: -1.52 Total: -1.58 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.96 -10.69 -41.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981502608.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.339 kcal (2) G-P(sol) polarization free energy of solvation -30.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds