Wall clock time and date at job start Tue Mar 31 2020 15:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86810 * 120.00121 * 2 1 4 4 H 1.48491 * 109.47112 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46742 * 299.99926 * 3 2 1 6 6 H 1.48496 * 109.46937 * 59.99767 * 3 2 1 7 7 C 1.38818 * 120.00303 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00251 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99552 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00061 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.47109 * 34.99989 * 10 9 7 12 12 C 1.53000 * 109.46906 * 275.00140 * 10 9 7 13 13 C 1.53001 * 109.46880 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47165 * 60.00378 * 13 12 10 15 15 C 1.53000 * 109.46913 * 299.99602 * 14 13 12 16 16 H 1.09002 * 109.47535 * 300.00197 * 15 14 13 17 17 N 1.46503 * 109.47189 * 180.02562 * 15 14 13 18 18 C 1.34775 * 119.99915 * 85.00485 * 17 15 14 19 19 O 1.21710 * 119.99852 * 359.97438 * 18 17 15 20 20 C 1.46467 * 119.99852 * 179.97438 * 18 17 15 21 21 C 1.36688 * 125.44933 * 179.97438 * 20 18 17 22 22 C 1.37401 * 113.31901 * 179.97438 * 21 20 18 23 23 C 1.34018 * 115.07284 * 0.02562 * 22 21 20 24 24 Cl 1.73592 * 124.53301 * 179.97438 * 23 22 21 25 25 S 1.70621 * 110.93403 * 359.97438 * 23 22 21 26 26 C 1.52999 * 109.47251 * 154.99993 * 10 9 7 27 27 H 0.97005 * 120.00366 * 0.02562 * 1 2 3 28 28 H 0.97000 * 120.00405 * 359.97438 * 9 7 2 29 29 H 1.09002 * 109.47535 * 299.99716 * 12 10 9 30 30 H 1.09004 * 109.47127 * 59.99922 * 12 10 9 31 31 H 1.08998 * 109.47047 * 179.97438 * 13 12 10 32 32 H 1.08997 * 109.47376 * 299.99996 * 13 12 10 33 33 H 1.09002 * 109.47256 * 180.02562 * 14 13 12 34 34 H 1.08997 * 109.47285 * 59.99562 * 14 13 12 35 35 H 0.97004 * 119.99797 * 265.00162 * 17 15 14 36 36 H 1.08001 * 123.34146 * 359.97438 * 21 20 18 37 37 H 1.07998 * 122.46672 * 180.02562 * 22 21 20 38 38 H 1.09002 * 109.46963 * 60.00424 * 26 10 9 39 39 H 1.08998 * 109.47142 * 300.00032 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9687 -3.5506 0.5900 12 6 2.4219 -4.0356 -1.4365 13 6 3.1874 -5.3603 -1.4364 14 6 2.3107 -6.4559 -0.8267 15 6 1.9468 -6.0772 0.6103 16 1 2.8575 -5.9705 1.1997 17 7 1.1078 -7.1265 1.1944 18 6 1.6784 -8.2081 1.7611 19 8 2.8907 -8.3132 1.7872 20 6 0.8396 -9.2569 2.3455 21 6 1.2980 -10.3963 2.9455 22 6 0.2921 -11.2098 3.4085 23 6 -0.9501 -10.7542 3.1955 24 17 -2.3980 -11.5821 3.6768 25 16 -0.9182 -9.2515 2.3879 26 6 1.1808 -4.7521 0.6102 27 1 -0.4851 0.8401 -0.0004 28 1 0.3556 -2.3881 0.0005 29 1 1.5112 -4.1418 -2.0260 30 1 3.0469 -3.2552 -1.8708 31 1 3.4463 -5.6304 -2.4602 32 1 4.0981 -5.2537 -0.8471 33 1 2.8562 -7.3996 -0.8262 34 1 1.4000 -6.5625 -1.4160 35 1 0.1416 -7.0429 1.1733 36 1 2.3469 -10.6336 3.0458 37 1 0.4880 -12.1473 3.9074 38 1 0.2702 -4.8584 0.0206 39 1 0.9216 -4.4823 1.6339 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981502608.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:05 Heat of formation + Delta-G solvation = -32.051421 kcal Electronic energy + Delta-G solvation = -22577.395377 eV Core-core repulsion = 19057.232157 eV Total energy + Delta-G solvation = -3520.163220 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.21607 -39.54625 -38.72114 -37.57188 -36.25558 -34.89781 -32.95014 -31.49061 -30.15883 -29.26739 -26.13027 -25.66793 -23.63067 -23.06807 -21.82045 -21.15577 -20.51141 -19.79238 -19.00334 -17.63372 -17.17911 -16.83717 -16.30095 -16.25661 -15.76156 -15.38286 -15.12698 -15.08259 -14.89420 -14.67795 -14.42087 -14.21673 -13.70290 -13.58779 -13.38347 -12.90711 -12.84681 -12.60538 -12.48289 -12.26575 -12.14863 -12.02126 -11.97589 -11.89065 -11.66477 -11.56834 -11.39149 -11.06082 -10.87466 -10.24170 -9.79312 -9.74582 -8.98844 -7.93144 -5.20657 -0.78375 -0.10774 0.57114 1.03599 1.17165 1.47986 1.48466 1.58157 1.96121 2.05158 2.57283 3.40462 3.57851 3.68868 3.85551 4.02040 4.04288 4.24578 4.27171 4.31009 4.41869 4.52373 4.57814 4.66320 4.73859 4.76818 4.90364 5.00544 5.09774 5.11774 5.17440 5.22759 5.35458 5.38783 5.51605 5.54383 5.66381 6.29592 6.35666 7.01227 7.36243 8.11917 8.35501 9.30428 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.020273 B = 0.002363 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.801404 B =11844.638409 C =12711.663738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.967 3.033 4 H -0.268 1.268 5 H -0.294 1.294 6 H -0.295 1.295 7 C -0.234 4.234 8 H 0.073 0.927 9 N -0.736 5.736 10 C 0.178 3.822 11 H 0.038 0.962 12 C -0.127 4.127 13 C -0.106 4.106 14 C -0.117 4.117 15 C 0.159 3.841 16 H 0.075 0.925 17 N -0.710 5.710 18 C 0.591 3.409 19 O -0.563 6.563 20 C -0.282 4.282 21 C -0.046 4.046 22 C -0.132 4.132 23 C -0.174 4.174 24 Cl 0.000 7.000 25 S 0.283 5.717 26 C -0.117 4.117 27 H 0.250 0.750 28 H 0.374 0.626 29 H 0.054 0.946 30 H 0.042 0.958 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.407 0.593 36 H 0.166 0.834 37 H 0.177 0.823 38 H 0.076 0.924 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.925 -26.604 4.787 27.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.268 4.268 3 Si 0.797 3.203 4 H -0.193 1.193 5 H -0.221 1.221 6 H -0.222 1.222 7 C -0.366 4.366 8 H 0.091 0.909 9 N -0.375 5.375 10 C 0.069 3.931 11 H 0.056 0.944 12 C -0.168 4.168 13 C -0.144 4.144 14 C -0.156 4.156 15 C 0.054 3.946 16 H 0.094 0.906 17 N -0.360 5.360 18 C 0.378 3.622 19 O -0.444 6.444 20 C -0.403 4.403 21 C -0.080 4.080 22 C -0.165 4.165 23 C -0.320 4.320 24 Cl 0.028 6.972 25 S 0.550 5.450 26 C -0.156 4.156 27 H 0.059 0.941 28 H 0.206 0.794 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.244 0.756 36 H 0.183 0.817 37 H 0.194 0.806 38 H 0.095 0.905 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.198 -25.605 4.352 26.168 hybrid contribution 0.432 0.169 0.598 0.756 sum -2.766 -25.436 4.949 26.060 Atomic orbital electron populations 1.69801 1.06429 1.25840 1.59865 1.25485 0.96356 1.00817 1.04112 0.85156 0.78268 0.80280 0.76599 1.19252 1.22130 1.22183 1.19610 0.91317 0.85253 1.40424 0.90932 1.42581 1.05471 1.00800 1.88675 1.20301 0.93837 0.84648 0.94334 0.94420 1.22107 0.99698 0.96459 0.98485 1.21410 0.98073 0.93596 1.01364 1.21830 1.00635 0.98545 0.94574 1.20865 0.93707 0.85380 0.94638 0.90649 1.45916 1.10765 1.20517 1.58845 1.17108 0.86857 0.81088 0.77161 1.90826 1.14831 1.78730 1.59966 1.24667 0.98174 1.02715 1.14777 1.20823 1.02060 0.90839 0.94237 1.20250 0.89035 1.03501 1.03685 1.25211 0.93744 1.02490 1.10594 1.98402 1.32451 1.76391 1.89923 1.83159 0.98569 1.12564 1.50718 1.21912 0.99218 0.92932 1.01522 0.94103 0.79422 0.92751 0.93928 0.90474 0.92185 0.91739 0.90671 0.75642 0.81679 0.80585 0.90536 0.91916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.49 13.06 21.65 0.28 -58.20 16 2 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 3 Si 0.97 46.03 29.55 68.60 2.03 48.06 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 5 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 7 C -0.23 -12.83 9.93 84.04 0.83 -11.99 16 8 H 0.07 3.88 7.83 -2.91 -0.02 3.85 16 9 N -0.74 -36.02 5.12 -322.94 -1.65 -37.68 16 10 C 0.18 6.72 2.77 44.99 0.12 6.85 16 11 H 0.04 1.51 8.08 -2.39 -0.02 1.49 16 12 C -0.13 -4.29 5.50 30.59 0.17 -4.12 16 13 C -0.11 -2.78 5.92 30.59 0.18 -2.60 16 14 C -0.12 -2.85 5.49 30.59 0.17 -2.69 16 15 C 0.16 4.17 2.45 45.01 0.11 4.28 16 16 H 0.08 2.27 7.57 -2.39 -0.02 2.25 16 17 N -0.71 -15.93 5.07 -446.62 -2.27 -18.19 16 18 C 0.59 14.63 7.74 86.39 0.67 15.29 16 19 O -0.56 -17.88 16.50 -4.38 -0.07 -17.95 16 20 C -0.28 -5.40 6.45 24.05 0.16 -5.24 16 21 C -0.05 -0.76 10.01 21.71 0.22 -0.54 16 22 C -0.13 -1.73 10.08 21.11 0.21 -1.51 16 23 C -0.17 -2.44 6.82 66.86 0.46 -1.98 16 24 Cl 0.00 0.00 29.27 -2.72 -0.08 -0.08 16 25 S 0.28 4.05 22.15 -56.49 -1.25 2.80 16 26 C -0.12 -3.52 4.86 30.61 0.15 -3.37 16 27 H 0.25 14.67 8.31 -92.70 -0.77 13.89 16 28 H 0.37 19.48 7.80 -92.71 -0.72 18.76 16 29 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.41 7.26 7.71 -92.71 -0.71 6.55 16 36 H 0.17 2.55 8.06 -2.91 -0.02 2.53 16 37 H 0.18 1.46 8.06 -2.91 -0.02 1.44 16 38 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -66.39 354.13 0.55 -65.84 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: -0.35 Total: 26.87 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: 3.91 Total: -11.45 kcal Atomic # 7 Polarization: -110.43 SS G_CDS: -3.64 Total: -114.07 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -0.07 Total: -17.95 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Atomic # 16 Polarization: 4.05 SS G_CDS: -1.25 Total: 2.80 kcal Atomic # 17 Polarization: 0.00 SS G_CDS: -0.08 Total: -0.08 kcal Total: -66.39 0.55 -65.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981502608.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.790 kcal (2) G-P(sol) polarization free energy of solvation -66.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds