Wall clock time and date at job start Tue Mar 31 2020 15:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 120.00002 * 2 1 4 4 H 1.48496 * 109.47288 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47331 * 300.00184 * 3 2 1 6 6 H 1.48504 * 109.47015 * 59.99914 * 3 2 1 7 7 C 1.38812 * 120.00137 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00336 * 179.97438 * 7 2 1 9 9 N 1.36948 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.46493 * 119.99998 * 179.97438 * 9 7 2 11 11 C 1.53036 * 109.45942 * 154.99940 * 10 9 7 12 12 C 1.53190 * 109.31273 * 181.38655 * 11 10 9 13 13 N 1.46923 * 108.77809 * 305.36826 * 12 11 10 14 14 C 1.34784 * 120.62964 * 233.58685 * 13 12 11 15 15 O 1.21279 * 119.99925 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99961 * 179.97438 * 14 13 12 17 17 C 1.50697 * 109.47266 * 180.02562 * 16 14 13 18 18 C 1.33348 * 125.18998 * 89.71604 * 17 16 14 19 19 C 1.38472 * 114.92670 * 179.79314 * 18 17 16 20 20 C 1.33503 * 114.88522 * 0.50219 * 19 18 17 21 21 Cl 1.73604 * 125.20859 * 179.70865 * 20 19 18 22 22 S 1.75876 * 125.18724 * 270.02476 * 17 16 14 23 23 C 1.46927 * 118.73985 * 53.85904 * 13 12 11 24 24 C 1.53041 * 109.46261 * 275.06879 * 10 9 7 25 25 H 0.96996 * 120.00161 * 359.97438 * 1 2 3 26 26 H 0.97000 * 119.99580 * 0.02562 * 9 7 2 27 27 H 1.09009 * 109.45917 * 35.02885 * 10 9 7 28 28 H 1.09001 * 109.49825 * 61.43537 * 11 10 9 29 29 H 1.09001 * 109.52568 * 301.35295 * 11 10 9 30 30 H 1.09007 * 109.58645 * 185.57808 * 12 11 10 31 31 H 1.08998 * 109.70504 * 65.22672 * 12 11 10 32 32 H 1.09004 * 109.46932 * 300.00223 * 16 14 13 33 33 H 1.08997 * 109.47392 * 59.99562 * 16 14 13 34 34 H 1.08000 * 122.53589 * 359.97438 * 18 17 16 35 35 H 1.07998 * 122.55792 * 180.23563 * 19 18 17 36 36 H 1.08998 * 109.58645 * 65.92691 * 23 13 12 37 37 H 1.09001 * 109.58579 * 186.35848 * 23 13 12 38 38 H 1.08990 * 109.49710 * 298.56763 * 24 10 9 39 39 H 1.09009 * 109.49418 * 58.63025 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.1804 -4.7522 0.6104 12 6 1.9620 -6.0694 0.6405 13 7 2.4416 -6.3659 -0.7163 14 6 2.1736 -7.5532 -1.2951 15 8 1.5314 -8.3891 -0.6953 16 6 2.6720 -7.8421 -2.6877 17 6 2.2402 -9.2262 -3.0988 18 6 1.0971 -9.5223 -3.7182 19 6 0.9176 -10.8658 -4.0011 20 6 1.9119 -11.6619 -3.6011 21 17 1.9614 -13.3844 -3.8115 22 16 3.1637 -10.6983 -2.8278 23 6 3.2239 -5.3458 -1.4277 24 6 2.4234 -4.0347 -1.4368 25 1 -0.4850 0.8400 0.0004 26 1 0.3556 -2.3881 -0.0002 27 1 2.9685 -3.5505 0.5905 28 1 0.2814 -4.8763 0.0066 29 1 0.9009 -4.4718 1.6259 30 1 1.3098 -6.8736 0.9814 31 1 2.8120 -5.9770 1.3164 32 1 2.2564 -7.1112 -3.3813 33 1 3.7601 -7.7807 -2.7042 34 1 0.3678 -8.7706 -3.9820 35 1 0.0383 -11.2417 -4.5030 36 1 4.1749 -5.1931 -0.9174 37 1 3.4046 -5.6724 -2.4518 38 1 1.5128 -4.1655 -2.0212 39 1 3.0286 -3.2428 -1.8784 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997081773.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:36 Heat of formation + Delta-G solvation = 2.093999 kcal Electronic energy + Delta-G solvation = -22661.830170 eV Core-core repulsion = 19143.147607 eV Total energy + Delta-G solvation = -3518.682563 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -40.21473 -38.31633 -37.38971 -36.79683 -34.54226 -32.74424 -31.87403 -30.71865 -29.30616 -27.28163 -24.92873 -23.74319 -23.06014 -22.45389 -20.50544 -19.69517 -18.99558 -17.69480 -17.27756 -17.04916 -16.15230 -15.69077 -15.29416 -14.87862 -14.13710 -14.09714 -13.78237 -13.74154 -13.53641 -13.49518 -13.27367 -13.12134 -12.95373 -12.34133 -12.12416 -11.89566 -11.73167 -11.61334 -11.34328 -11.02619 -10.97322 -10.93287 -10.86886 -10.54121 -10.24846 -9.89516 -9.83638 -9.72314 -8.97191 -8.80739 -8.74478 -8.56121 -7.03327 -5.82726 -3.12275 0.52473 0.84110 1.55113 1.96050 2.34376 2.58641 3.06259 3.38519 3.44066 3.46578 4.30099 4.48808 4.53136 4.78813 4.98483 5.02230 5.16806 5.25286 5.27756 5.28867 5.35169 5.48339 5.56006 5.65812 5.67404 5.82378 5.89024 5.95162 6.07233 6.17087 6.29937 6.33476 6.45222 6.55659 6.83073 6.97555 7.42490 7.63813 8.14745 8.35436 9.46770 10.04055 10.38439 11.39782 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.037758 B = 0.002098 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.380042 B =13341.010136 C =13398.736820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.724 5.724 10 C 0.179 3.821 11 C -0.139 4.139 12 C 0.117 3.883 13 N -0.605 5.605 14 C 0.514 3.486 15 O -0.537 6.537 16 C -0.073 4.073 17 C -0.146 4.146 18 C -0.122 4.122 19 C -0.112 4.112 20 C -0.154 4.154 21 Cl -0.020 7.020 22 S 0.159 5.841 23 C 0.104 3.896 24 C -0.151 4.151 25 H 0.255 0.745 26 H 0.384 0.616 27 H 0.048 0.952 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.118 0.882 33 H 0.106 0.894 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.759 -22.405 -8.315 24.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.365 5.365 10 C 0.068 3.932 11 C -0.177 4.177 12 C -0.006 4.006 13 N -0.339 5.339 14 C 0.301 3.699 15 O -0.414 6.414 16 C -0.115 4.115 17 C -0.265 4.265 18 C -0.152 4.152 19 C -0.145 4.145 20 C -0.297 4.297 21 Cl 0.009 6.991 22 S 0.422 5.578 23 C -0.019 4.019 24 C -0.192 4.192 25 H 0.065 0.935 26 H 0.217 0.783 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.136 0.864 33 H 0.124 0.876 34 H 0.165 0.835 35 H 0.166 0.834 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.939 -23.191 -7.320 25.582 hybrid contribution -1.275 1.239 -0.775 1.939 sum 6.664 -21.952 -8.095 24.328 Atomic orbital electron populations 1.69672 1.05130 1.25615 1.57543 1.24764 0.95513 0.97757 1.02933 0.86135 0.78763 0.84162 0.77213 1.20544 1.21879 1.21870 1.19271 0.90986 0.84061 1.42813 0.91096 1.42449 1.05827 0.99712 1.88479 1.20164 0.94477 0.86107 0.92428 1.22202 0.99189 0.94080 1.02279 1.21623 0.98763 0.98102 0.82111 1.48169 1.53870 1.14722 1.17099 1.20322 0.80214 0.81751 0.87601 1.90712 1.39968 1.45941 1.64811 1.20258 1.03088 0.92315 0.95820 1.23928 0.99497 0.97659 1.05398 1.19926 0.97417 0.96078 1.01786 1.20147 0.99455 0.92565 1.02340 1.25182 1.02673 0.89892 1.11977 1.98361 1.98079 1.06683 1.96018 1.84301 1.19877 0.96221 1.57357 1.22009 0.94602 0.88905 0.96359 1.22759 0.99991 0.94632 1.01838 0.93510 0.78254 0.93397 0.91838 0.90536 0.89362 0.91545 0.86415 0.87603 0.83456 0.83413 0.91220 0.90474 0.92111 0.90578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.50 13.06 55.49 0.72 -26.77 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 21.72 29.55 -169.99 -5.02 16.70 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.24 -6.35 9.93 -15.05 -0.15 -6.50 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 9 N -0.72 -17.21 5.12 -53.39 -0.27 -17.48 16 10 C 0.18 3.23 2.73 -67.89 -0.19 3.04 16 11 C -0.14 -2.18 5.55 -26.61 -0.15 -2.33 16 12 C 0.12 1.58 6.43 -3.71 -0.02 1.56 16 13 N -0.61 -7.69 2.97 -172.50 -0.51 -8.20 16 14 C 0.51 6.68 7.69 -10.98 -0.08 6.59 16 15 O -0.54 -8.86 15.45 5.56 0.09 -8.77 16 16 C -0.07 -0.68 4.54 -29.04 -0.13 -0.81 16 17 C -0.15 -1.52 5.00 -36.02 -0.18 -1.70 16 18 C -0.12 -1.23 10.05 -41.20 -0.41 -1.64 16 19 C -0.11 -1.09 10.13 -41.15 -0.42 -1.51 16 20 C -0.15 -1.57 7.10 29.08 0.21 -1.36 16 21 Cl -0.02 -0.18 29.29 -51.86 -1.52 -1.70 16 22 S 0.16 1.61 23.33 -107.50 -2.51 -0.90 16 23 C 0.10 1.18 6.37 -3.48 -0.02 1.16 16 24 C -0.15 -2.31 5.67 -26.38 -0.15 -2.46 16 25 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 26 H 0.38 9.87 7.80 -40.82 -0.32 9.56 16 27 H 0.05 0.88 8.08 -51.92 -0.42 0.46 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.09 1.26 7.01 -51.93 -0.36 0.90 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.12 0.89 7.70 -51.93 -0.40 0.49 16 33 H 0.11 0.76 7.93 -51.93 -0.41 0.34 16 34 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.15 1.15 8.06 -52.49 -0.42 0.72 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.66 5.93 -51.93 -0.31 0.35 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.08 1.24 8.14 -51.92 -0.42 0.82 16 LS Contribution 352.32 15.07 5.31 5.31 Total: -1.00 -31.40 352.32 -10.66 -42.06 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -5.15 Total: 6.18 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -1.80 Total: -6.43 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: -0.06 Total: -52.45 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.09 Total: -8.77 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -2.51 Total: -0.90 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -1.52 Total: -1.70 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.40 -10.66 -42.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997081773.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.151 kcal (2) G-P(sol) polarization free energy of solvation -31.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds