Wall clock time and date at job start Tue Mar 31 2020 15:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 120.00002 * 2 1 4 4 H 1.48496 * 109.47288 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47331 * 300.00184 * 3 2 1 6 6 H 1.48504 * 109.47015 * 59.99914 * 3 2 1 7 7 C 1.38812 * 120.00137 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00336 * 179.97438 * 7 2 1 9 9 N 1.36948 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.46493 * 119.99998 * 179.97438 * 9 7 2 11 11 C 1.53036 * 109.45942 * 154.99940 * 10 9 7 12 12 C 1.53190 * 109.31273 * 181.38655 * 11 10 9 13 13 N 1.46923 * 108.77809 * 305.36826 * 12 11 10 14 14 C 1.34784 * 120.62964 * 233.58685 * 13 12 11 15 15 O 1.21279 * 119.99925 * 359.97438 * 14 13 12 16 16 C 1.50700 * 119.99961 * 179.97438 * 14 13 12 17 17 C 1.50697 * 109.47266 * 180.02562 * 16 14 13 18 18 C 1.33348 * 125.18998 * 89.71604 * 17 16 14 19 19 C 1.38472 * 114.92670 * 179.79314 * 18 17 16 20 20 C 1.33503 * 114.88522 * 0.50219 * 19 18 17 21 21 Cl 1.73604 * 125.20859 * 179.70865 * 20 19 18 22 22 S 1.75876 * 125.18724 * 270.02476 * 17 16 14 23 23 C 1.46927 * 118.73985 * 53.85904 * 13 12 11 24 24 C 1.53041 * 109.46261 * 275.06879 * 10 9 7 25 25 H 0.96996 * 120.00161 * 359.97438 * 1 2 3 26 26 H 0.97000 * 119.99580 * 0.02562 * 9 7 2 27 27 H 1.09009 * 109.45917 * 35.02885 * 10 9 7 28 28 H 1.09001 * 109.49825 * 61.43537 * 11 10 9 29 29 H 1.09001 * 109.52568 * 301.35295 * 11 10 9 30 30 H 1.09007 * 109.58645 * 185.57808 * 12 11 10 31 31 H 1.08998 * 109.70504 * 65.22672 * 12 11 10 32 32 H 1.09004 * 109.46932 * 300.00223 * 16 14 13 33 33 H 1.08997 * 109.47392 * 59.99562 * 16 14 13 34 34 H 1.08000 * 122.53589 * 359.97438 * 18 17 16 35 35 H 1.07998 * 122.55792 * 180.23563 * 19 18 17 36 36 H 1.08998 * 109.58645 * 65.92691 * 23 13 12 37 37 H 1.09001 * 109.58579 * 186.35848 * 23 13 12 38 38 H 1.08990 * 109.49710 * 298.56763 * 24 10 9 39 39 H 1.09009 * 109.49418 * 58.63025 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.1804 -4.7522 0.6104 12 6 1.9620 -6.0694 0.6405 13 7 2.4416 -6.3659 -0.7163 14 6 2.1736 -7.5532 -1.2951 15 8 1.5314 -8.3891 -0.6953 16 6 2.6720 -7.8421 -2.6877 17 6 2.2402 -9.2262 -3.0988 18 6 1.0971 -9.5223 -3.7182 19 6 0.9176 -10.8658 -4.0011 20 6 1.9119 -11.6619 -3.6011 21 17 1.9614 -13.3844 -3.8115 22 16 3.1637 -10.6983 -2.8278 23 6 3.2239 -5.3458 -1.4277 24 6 2.4234 -4.0347 -1.4368 25 1 -0.4850 0.8400 0.0004 26 1 0.3556 -2.3881 -0.0002 27 1 2.9685 -3.5505 0.5905 28 1 0.2814 -4.8763 0.0066 29 1 0.9009 -4.4718 1.6259 30 1 1.3098 -6.8736 0.9814 31 1 2.8120 -5.9770 1.3164 32 1 2.2564 -7.1112 -3.3813 33 1 3.7601 -7.7807 -2.7042 34 1 0.3678 -8.7706 -3.9820 35 1 0.0383 -11.2417 -4.5030 36 1 4.1749 -5.1931 -0.9174 37 1 3.4046 -5.6724 -2.4518 38 1 1.5128 -4.1655 -2.0212 39 1 3.0286 -3.2428 -1.8784 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997081773.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:36 Heat of formation + Delta-G solvation = -16.069703 kcal Electronic energy + Delta-G solvation = -22662.617808 eV Core-core repulsion = 19143.147607 eV Total energy + Delta-G solvation = -3519.470201 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.24918 -39.17269 -38.51482 -37.56534 -36.11247 -33.99376 -33.21146 -31.81012 -30.93873 -28.14751 -26.45278 -24.73920 -24.34693 -23.70452 -21.73681 -20.52701 -20.08461 -19.04645 -18.49028 -18.19867 -16.95790 -16.72424 -16.64513 -16.23038 -15.46446 -15.38947 -15.07196 -14.96979 -14.68454 -14.48935 -14.17442 -14.10036 -13.89884 -13.58341 -13.25102 -13.09220 -12.86556 -12.75447 -12.60697 -12.47242 -12.17909 -12.09509 -12.02804 -11.97758 -11.70850 -11.68099 -11.27765 -10.98810 -10.79626 -9.64915 -9.55712 -9.49118 -8.98601 -7.91961 -5.20395 -0.22976 0.11188 0.81221 1.22392 1.49443 1.49979 1.58793 1.59610 1.61778 2.10321 2.58096 3.41675 3.52871 3.62492 3.84416 3.98220 4.11605 4.15390 4.22195 4.32536 4.38648 4.44998 4.50934 4.60719 4.67600 4.82499 4.86485 4.89421 4.94982 5.06017 5.08621 5.13399 5.34143 5.36047 5.52556 5.57269 5.66487 6.30063 6.43872 7.15862 7.35974 8.12582 8.34619 9.31934 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.037758 B = 0.002098 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.380042 B =13341.010136 C =13398.736820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.081 4.081 3 Si 0.970 3.030 4 H -0.262 1.262 5 H -0.296 1.296 6 H -0.299 1.299 7 C -0.231 4.231 8 H 0.081 0.919 9 N -0.740 5.740 10 C 0.171 3.829 11 C -0.127 4.127 12 C 0.124 3.876 13 N -0.606 5.606 14 C 0.513 3.487 15 O -0.577 6.577 16 C -0.069 4.069 17 C -0.156 4.156 18 C -0.130 4.130 19 C -0.116 4.116 20 C -0.167 4.167 21 Cl -0.016 7.016 22 S 0.153 5.847 23 C 0.112 3.888 24 C -0.141 4.141 25 H 0.249 0.751 26 H 0.369 0.631 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.142 0.858 33 H 0.135 0.865 34 H 0.159 0.841 35 H 0.164 0.836 36 H 0.088 0.912 37 H 0.116 0.884 38 H 0.048 0.952 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.764 -23.134 -9.342 26.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.273 4.273 3 Si 0.800 3.200 4 H -0.186 1.186 5 H -0.224 1.224 6 H -0.226 1.226 7 C -0.362 4.362 8 H 0.099 0.901 9 N -0.379 5.379 10 C 0.063 3.937 11 C -0.166 4.166 12 C 0.000 4.000 13 N -0.339 5.339 14 C 0.301 3.699 15 O -0.457 6.457 16 C -0.110 4.110 17 C -0.275 4.275 18 C -0.160 4.160 19 C -0.149 4.149 20 C -0.310 4.310 21 Cl 0.013 6.987 22 S 0.416 5.584 23 C -0.010 4.010 24 C -0.182 4.182 25 H 0.057 0.943 26 H 0.201 0.799 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.159 0.841 33 H 0.153 0.847 34 H 0.177 0.823 35 H 0.181 0.819 36 H 0.106 0.894 37 H 0.134 0.866 38 H 0.067 0.933 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.011 -23.960 -8.361 27.280 hybrid contribution -1.910 1.360 -0.432 2.385 sum 8.100 -22.600 -8.793 25.567 Atomic orbital electron populations 1.69831 1.06705 1.25781 1.60083 1.25558 0.96305 1.01121 1.04292 0.85113 0.78477 0.80078 0.76350 1.18616 1.22378 1.22626 1.19672 0.91523 0.85004 1.40042 0.90133 1.42698 1.05393 1.01141 1.88637 1.20448 0.94195 0.84497 0.94554 1.22046 0.98593 0.94704 1.01269 1.21469 0.98941 0.96124 0.83419 1.48236 1.53827 1.15152 1.16685 1.20944 0.79260 0.81045 0.88614 1.90701 1.41745 1.47156 1.66068 1.20363 1.04881 0.92255 0.93523 1.24133 0.99707 0.98095 1.05520 1.20177 0.97635 0.96513 1.01702 1.20391 0.99849 0.92573 1.02075 1.25338 1.02990 0.90307 1.12381 1.98359 1.98080 1.06292 1.96012 1.84257 1.20109 0.96547 1.57482 1.22077 0.93930 0.86202 0.98785 1.22527 0.99993 0.96824 0.98878 0.94262 0.79938 0.93300 0.93241 0.91379 0.90147 0.89913 0.84080 0.84730 0.82314 0.81900 0.89388 0.86625 0.93337 0.91435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.71 13.06 21.65 0.28 -58.43 16 2 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 3 Si 0.97 44.81 29.55 68.60 2.03 46.84 16 4 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 7 C -0.23 -12.12 9.93 84.03 0.83 -11.29 16 8 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 9 N -0.74 -35.33 5.12 -322.82 -1.65 -36.98 16 10 C 0.17 6.04 2.73 45.02 0.12 6.16 16 11 C -0.13 -3.96 5.55 30.67 0.17 -3.79 16 12 C 0.12 3.17 6.43 86.36 0.56 3.73 16 13 N -0.61 -13.76 2.97 -818.06 -2.43 -16.19 16 14 C 0.51 12.01 7.69 87.66 0.67 12.69 16 15 O -0.58 -18.27 15.45 -3.03 -0.05 -18.32 16 16 C -0.07 -1.04 4.54 29.10 0.13 -0.91 16 17 C -0.16 -2.88 5.00 24.58 0.12 -2.76 16 18 C -0.13 -2.36 10.05 21.22 0.21 -2.15 16 19 C -0.12 -2.08 10.13 21.25 0.22 -1.86 16 20 C -0.17 -3.19 7.10 66.75 0.47 -2.71 16 21 Cl -0.02 -0.28 29.29 -2.72 -0.08 -0.36 16 22 S 0.15 2.85 23.33 -56.49 -1.32 1.54 16 23 C 0.11 2.11 6.37 86.51 0.55 2.66 16 24 C -0.14 -4.04 5.67 30.82 0.17 -3.87 16 25 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 26 H 0.37 19.51 7.80 -92.71 -0.72 18.79 16 27 H 0.05 1.72 8.08 -2.38 -0.02 1.70 16 28 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.08 2.24 7.01 -2.38 -0.02 2.22 16 31 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.14 1.51 7.70 -2.38 -0.02 1.49 16 33 H 0.13 1.28 7.93 -2.39 -0.02 1.26 16 34 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 35 H 0.16 2.27 8.06 -2.91 -0.02 2.24 16 36 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.12 1.35 5.93 -2.39 -0.01 1.34 16 38 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 Total: -1.00 -68.83 352.32 1.85 -66.98 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 0.35 Total: 23.08 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: 4.71 Total: -8.16 kcal Atomic # 7 Polarization: -107.81 SS G_CDS: -3.80 Total: -111.60 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.05 Total: -18.32 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Atomic # 16 Polarization: 2.85 SS G_CDS: -1.32 Total: 1.54 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -0.08 Total: -0.36 kcal Total: -68.83 1.85 -66.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997081773.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.915 kcal (2) G-P(sol) polarization free energy of solvation -68.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds