Wall clock time and date at job start Tue Mar 31 2020 15:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00137 * 2 1 4 4 H 1.48504 * 109.46842 * 240.00304 * 3 2 1 5 5 H 1.48504 * 109.47101 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47434 * 120.00103 * 3 2 1 7 7 C 1.38807 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00112 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00265 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00107 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.50307 * 34.93945 * 10 9 7 12 12 C 1.53043 * 109.49640 * 155.00428 * 10 9 7 13 13 C 1.53037 * 109.53875 * 181.31602 * 12 10 9 14 14 C 1.53196 * 109.31315 * 298.63222 * 13 12 10 15 15 N 1.46929 * 108.77486 * 54.63188 * 14 13 12 16 16 C 1.34783 * 120.62687 * 126.36877 * 15 14 13 17 17 O 1.21280 * 119.99660 * 180.02562 * 16 15 14 18 18 C 1.50696 * 119.99819 * 0.02562 * 16 15 14 19 19 C 1.50700 * 109.46852 * 179.97438 * 18 16 15 20 20 C 1.33351 * 125.18536 * 89.99968 * 19 18 16 21 21 C 1.38481 * 114.92964 * 180.02562 * 20 19 18 22 22 C 1.33507 * 114.87970 * 359.97438 * 21 20 19 23 23 Cl 1.73596 * 125.20539 * 179.97438 * 22 21 20 24 24 S 1.75879 * 125.19123 * 269.69763 * 19 18 16 25 25 C 1.46918 * 118.73922 * 306.39780 * 15 14 13 26 26 H 0.97002 * 119.99653 * 0.02562 * 1 2 3 27 27 H 0.97001 * 119.99586 * 0.02562 * 9 7 2 28 28 H 1.09004 * 109.46377 * 61.29154 * 12 10 9 29 29 H 1.08996 * 109.44980 * 301.32823 * 12 10 9 30 30 H 1.08998 * 109.49886 * 178.68119 * 13 12 10 31 31 H 1.08994 * 109.52444 * 58.59984 * 13 12 10 32 32 H 1.08998 * 109.58804 * 174.42625 * 14 13 12 33 33 H 1.09003 * 109.58394 * 294.85202 * 14 13 12 34 34 H 1.09005 * 109.47250 * 299.99524 * 18 16 15 35 35 H 1.09001 * 109.47511 * 59.99735 * 18 16 15 36 36 H 1.08001 * 122.54112 * 0.02562 * 20 19 18 37 37 H 1.07994 * 122.56065 * 179.97438 * 21 20 19 38 38 H 1.09008 * 109.58859 * 293.81127 * 25 15 14 39 39 H 1.09002 * 109.58786 * 173.39329 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 1 2.9694 -3.5507 0.5879 12 6 1.1811 -4.7529 0.6091 13 6 1.9573 -6.0715 0.6396 14 6 2.3173 -6.4808 -0.7921 15 7 3.0364 -5.3719 -1.4343 16 6 4.2395 -5.5741 -2.0071 17 8 4.8232 -4.6505 -2.5336 18 6 4.8594 -6.9476 -1.9934 19 6 6.1928 -6.9039 -2.6942 20 6 7.3623 -6.6512 -2.1055 21 6 8.4572 -6.6632 -2.9532 22 6 8.1751 -6.9267 -4.2313 23 17 9.3388 -7.0074 -5.5169 24 16 6.4449 -7.1858 -4.4118 25 6 2.4192 -4.0387 -1.4395 26 1 -0.4850 0.8401 -0.0004 27 1 0.3556 -2.3881 -0.0005 28 1 0.2811 -4.8752 0.0064 29 1 0.9026 -4.4719 1.6247 30 1 1.3406 -6.8462 1.0953 31 1 2.8698 -5.9436 1.2218 32 1 2.9540 -7.3652 -0.7701 33 1 1.4064 -6.6974 -1.3502 34 1 5.0008 -7.2721 -0.9625 35 1 4.2017 -7.6482 -2.5079 36 1 7.4492 -6.4522 -1.0475 37 1 9.4625 -6.4740 -2.6070 38 1 1.5166 -4.0562 -2.0505 39 1 3.1231 -3.3118 -1.8447 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000404609.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:39 Heat of formation + Delta-G solvation = -17.396157 kcal Electronic energy + Delta-G solvation = -22908.282224 eV Core-core repulsion = 19388.754504 eV Total energy + Delta-G solvation = -3519.527720 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.23341 -39.17146 -38.48510 -37.56611 -36.20097 -34.03959 -33.02459 -32.67870 -30.07882 -28.16618 -26.12625 -25.86214 -24.29728 -23.21218 -21.77884 -20.52336 -20.02753 -19.12903 -18.48870 -18.18054 -16.97363 -16.87473 -16.47245 -16.23710 -15.59770 -15.43988 -15.25885 -14.92557 -14.58850 -14.45771 -14.17522 -14.02343 -13.85832 -13.66303 -13.60210 -13.06484 -12.89372 -12.76502 -12.53383 -12.42326 -12.26580 -12.09062 -11.95940 -11.86064 -11.71708 -11.63852 -11.31987 -11.10830 -10.84171 -9.71129 -9.56523 -9.49799 -9.00902 -7.99686 -5.28604 -0.23735 0.11334 0.81351 1.21542 1.43159 1.46007 1.52037 1.58849 1.65063 2.12069 2.52884 3.33604 3.52099 3.67429 3.82196 4.04007 4.11148 4.16243 4.27265 4.32979 4.37362 4.42082 4.50624 4.59053 4.67965 4.80419 4.91155 4.94011 4.95720 5.07339 5.11490 5.19249 5.36194 5.40680 5.44449 5.50587 5.60835 6.23416 6.51300 7.21968 7.29809 8.03221 8.27366 9.22844 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.014761 B = 0.002823 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.464648 B = 9914.979121 C =11320.856511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.068 4.068 3 Si 0.967 3.033 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.064 0.936 9 N -0.731 5.731 10 C 0.167 3.833 11 H 0.032 0.968 12 C -0.120 4.120 13 C -0.121 4.121 14 C 0.099 3.901 15 N -0.605 5.605 16 C 0.502 3.498 17 O -0.587 6.587 18 C -0.061 4.061 19 C -0.157 4.157 20 C -0.129 4.129 21 C -0.116 4.116 22 C -0.167 4.167 23 Cl -0.017 7.017 24 S 0.144 5.856 25 C 0.108 3.892 26 H 0.253 0.747 27 H 0.377 0.623 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.111 0.889 31 H 0.067 0.933 32 H 0.126 0.874 33 H 0.083 0.917 34 H 0.153 0.847 35 H 0.137 0.863 36 H 0.164 0.836 37 H 0.164 0.836 38 H 0.054 0.946 39 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.991 -24.975 -3.507 27.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.261 4.261 3 Si 0.796 3.204 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.203 1.203 7 C -0.377 4.377 8 H 0.082 0.918 9 N -0.371 5.371 10 C 0.058 3.942 11 H 0.050 0.950 12 C -0.158 4.158 13 C -0.160 4.160 14 C -0.022 4.022 15 N -0.338 5.338 16 C 0.291 3.709 17 O -0.467 6.467 18 C -0.102 4.102 19 C -0.275 4.275 20 C -0.159 4.159 21 C -0.149 4.149 22 C -0.311 4.311 23 Cl 0.012 6.988 24 S 0.407 5.593 25 C -0.018 4.018 26 H 0.062 0.938 27 H 0.209 0.791 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.129 0.871 31 H 0.086 0.914 32 H 0.144 0.856 33 H 0.102 0.898 34 H 0.171 0.829 35 H 0.155 0.845 36 H 0.181 0.819 37 H 0.182 0.818 38 H 0.072 0.928 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 11.589 -24.722 -5.121 27.780 hybrid contribution 1.005 2.126 0.731 2.462 sum 12.594 -22.596 -4.390 26.239 Atomic orbital electron populations 1.69780 1.06309 1.26239 1.59086 1.25472 0.96381 1.00783 1.03422 0.85321 0.77399 0.79668 0.78055 1.21107 1.21546 1.20262 1.19469 0.90994 0.85537 1.41699 0.91761 1.42529 1.05519 1.00713 1.88325 1.20666 0.94642 0.85975 0.92928 0.95008 1.21757 0.98520 0.94855 1.00713 1.21882 1.00979 0.96421 0.96706 1.22193 0.98355 0.88615 0.93062 1.48324 1.18990 1.10443 1.56048 1.21265 0.80587 0.91530 0.77498 1.90730 1.62716 1.46360 1.46867 1.20368 0.91334 0.93715 1.04825 1.24177 0.99089 1.08322 0.95925 1.20201 0.90526 1.02620 1.02548 1.20421 1.02227 1.01572 0.90677 1.25336 0.95255 1.16257 0.94210 1.98355 1.55736 1.97078 1.47648 1.84302 0.98496 1.69140 1.07363 1.22150 0.96440 0.83528 0.99640 0.93819 0.79081 0.91723 0.92294 0.87108 0.91422 0.85566 0.89841 0.82931 0.84549 0.81897 0.81816 0.92755 0.93708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.16 13.06 21.65 0.28 -58.87 16 2 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 3 Si 0.97 47.56 29.55 68.60 2.03 49.59 16 4 H -0.28 -13.87 7.11 99.48 0.71 -13.17 16 5 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 6 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 7 C -0.25 -14.05 9.93 84.03 0.83 -13.21 16 8 H 0.06 3.68 7.83 -2.91 -0.02 3.66 16 9 N -0.73 -37.05 5.12 -322.58 -1.65 -38.71 16 10 C 0.17 6.55 2.92 45.07 0.13 6.68 16 11 H 0.03 1.35 8.08 -2.39 -0.02 1.33 16 12 C -0.12 -3.40 5.35 30.62 0.16 -3.24 16 13 C -0.12 -2.09 6.08 30.67 0.19 -1.91 16 14 C 0.10 1.51 6.34 86.36 0.55 2.06 16 15 N -0.61 -16.11 2.97 -818.89 -2.43 -18.55 16 16 C 0.50 13.89 7.69 87.65 0.67 14.56 16 17 O -0.59 -23.05 15.45 -3.03 -0.05 -23.10 16 18 C -0.06 -0.95 4.54 29.10 0.13 -0.82 16 19 C -0.16 -3.12 5.00 24.58 0.12 -3.00 16 20 C -0.13 -2.49 10.05 21.22 0.21 -2.27 16 21 C -0.12 -2.26 10.13 21.25 0.22 -2.05 16 22 C -0.17 -3.54 7.10 66.75 0.47 -3.06 16 23 Cl -0.02 -0.32 29.29 -2.72 -0.08 -0.40 16 24 S 0.14 3.02 23.33 -56.49 -1.32 1.70 16 25 C 0.11 4.08 6.02 86.36 0.52 4.60 16 26 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 27 H 0.38 20.10 7.80 -92.71 -0.72 19.38 16 28 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.13 0.82 5.93 -2.39 -0.01 0.81 16 33 H 0.08 1.13 8.14 -2.39 -0.02 1.12 16 34 H 0.15 1.26 7.69 -2.38 -0.02 1.24 16 35 H 0.14 1.28 7.94 -2.39 -0.02 1.26 16 36 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 37 H 0.16 2.51 8.06 -2.91 -0.02 2.48 16 38 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 39 H 0.04 2.08 7.01 -2.39 -0.02 2.07 16 Total: -1.00 -76.19 352.30 1.81 -74.38 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 0.35 Total: 19.12 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: 4.68 Total: -5.16 kcal Atomic # 7 Polarization: -112.32 SS G_CDS: -3.80 Total: -116.13 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.05 Total: -23.10 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.59 kcal Atomic # 16 Polarization: 3.02 SS G_CDS: -1.32 Total: 1.70 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -0.08 Total: -0.40 kcal Total: -76.19 1.81 -74.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000404609.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.984 kcal (2) G-P(sol) polarization free energy of solvation -76.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds